Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G14980 Arabidopsis lyrata HOM05D005810 ORTHO05D007279 0.0e+00 1396.7 716 100.0
AT3G04820 Arabidopsis thaliana HOM05D005810 ORTHO05D007279 0.0e+00 1321.6 716 95.0
CARHR079070 Cardamine hirsuta HOM05D005810 ORTHO05D007279 0.0e+00 1284.6 716 91.6
Sp3g03650 Schrenkiella parvula HOM05D005810 ORTHO05D007279 0.0e+00 1223.4 716 88.3
Thhalv10022286m.g Eutrema salsugineum HOM05D005810 ORTHO05D007279 0.0e+00 1195.6 709 87.9
BolC3t16404H Brassica oleracea HOM05D005810 ORTHO05D007279 0.0e+00 1172.1 718 86.4
BcaC01g04347 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1171.8 717 86.1
BraA03t12559Z Brassica rapa HOM05D005810 ORTHO05D007279 0.0e+00 1170.2 730 84.9
BcaB04g19298 Brassica carinata HOM05D005810 ORTHO05D007279 0.0e+00 1161.0 690 87.4
C03p41160 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1157.1 711 85.8
A03p33850 Brassica napus HOM05D005810 ORTHO05D007279 0.0e+00 1154.8 723 84.6
Carub.0003s0400 Capsella rubella HOM05D005810 ORTHO05D007279 0.0e+00 1134.8 626 93.3
Aa31LG5G15210 Aethionema arabicum HOM05D005810 ORTHO05D007279 0.0e+00 1128.6 766 78.5
THA.LOC104821678 Tarenaya hassleriana HOM05D005810 ORTHO05D007279 0.0e+00 1103.2 724 78.7
COL.COLO4_15299 Corchorus olitorius HOM05D005810 ORTHO05D007279 3.0e-267 925.2 703 68.8
Cfa006452 Carpinus fangiana HOM05D005810 ORTHO05D007279 5.6e-266 921.0 701 67.8
Thecc.05G287300 Theobroma cacao HOM05D005810 ORTHO05D007279 2.0e-263 912.5 730 66.0
Duzib177G1000 Durio zibethinus HOM05D005810 ORTHO05D007279 2.6e-263 912.1 735 65.4
QL03p024871 Quercus lobata HOM05D005810 ORTHO05D007279 5.4e-261 904.4 724 65.9
Potri.005G051400 Populus trichocarpa HOM05D005810 ORTHO05D007279 3.5e-260 901.7 699 66.8
Gohir.A11G254200 Gossypium hirsutum HOM05D005810 ORTHO05D007279 3.0e-259 898.7 694 67.0
Gorai.007G284000 Gossypium raimondii HOM05D005810 ORTHO05D007279 6.6e-259 897.5 694 66.9
Gohir.D11G264000 Gossypium hirsutum HOM05D005810 ORTHO05D007279 1.3e-257 893.3 700 66.0
Ciclev10003382m.g Citrus clementina HOM05D005810 ORTHO05D007279 1.8e-256 889.4 689 68.7
Cpa.g.sc117.72 Carica papaya HOM05D005810 ORTHO05D007279 6.9e-256 887.5 729 65.4
Prupe.6G340900 Prunus persica HOM05D005810 ORTHO05D007279 1.5e-255 886.3 714 64.8
MD04G1221700 Malus domestica HOM05D005810 ORTHO05D007279 5.8e-255 884.4 711 64.8
GSVIVG01021833001 Vitis vinifera HOM05D005810 ORTHO05D007279 7.6e-255 884.0 693 67.4
Eucgr.B01694 Eucalyptus grandis HOM05D005810 ORTHO05D007279 3.8e-254 881.7 680 65.4
FvH4_6g03330 Fragaria vesca HOM05D005810 ORTHO05D007279 5.6e-250 867.8 731 62.1
RcHm_v2.0_Chr3g0451831 Rosa chinensis HOM05D005810 ORTHO05D007279 1.6e-249 866.3 737 61.7
PGR031G1118 Punica granatum HOM05D005810 ORTHO05D007279 6.9e-248 860.9 677 65.1
CSS0013071 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 2.0e-247 859.4 712 63.6
CSS0027419 Camellia sinensis var. sinensis HOM05D005810 ORTHO05D007279 4.5e-247 858.2 703 63.4
CANSAT54G2140 Cannabis sativa HOM05D005810 ORTHO05D007279 1.1e-245 853.6 721 63.2
MELO3C024669.2 Cucumis melo HOM05D005810 ORTHO05D007279 1.4e-245 853.2 704 63.4
Glyma.03G245900 Glycine max HOM05D005810 ORTHO05D007279 1.4e-245 853.2 691 64.7
Sed0015078 Sechium edule HOM05D005810 ORTHO05D007279 3.5e-244 848.6 723 63.3
PSO832G3650 Papaver somniferum HOM05D005810 ORTHO05D007279 4.6e-244 848.2 721 64.2
Aqoxy5G00419 Aquilegia oxysepala HOM05D005810 ORTHO05D007279 1.0e-243 847.0 718 63.1
PSO210G1835 Papaver somniferum HOM05D005810 ORTHO05D007279 6.7e-243 844.3 717 63.9
Phvul.006G100200 Phaseolus vulgaris HOM05D005810 ORTHO05D007279 8.7e-243 844.0 690 63.9
Lj1g0027742 Lotus japonicus HOM05D005810 ORTHO05D007279 1.9e-242 842.8 692 64.2
Lalb_Chr18g0045021 Lupinus albus HOM05D005810 ORTHO05D007279 2.5e-242 842.4 686 64.7
arahy.Tifrunner.gnm1.ann1.BBX725 Arachis hypogaea HOM05D005810 ORTHO05D007279 4.8e-241 838.2 697 62.7
arahy.Tifrunner.gnm1.ann1.E80190 Arachis hypogaea HOM05D005810 ORTHO05D007279 3.1e-240 835.5 697 62.6
ClCG06G009190 Citrullus lanatus HOM05D005810 ORTHO05D007279 4.0e-240 835.1 716 63.0
Ca_09411_v3 Cicer arietinum L. HOM05D005810 ORTHO05D007279 1.5e-239 833.2 698 62.0
VMungo0222G0001 Vigna mungo HOM05D005810 ORTHO05D007279 3.4e-239 832.0 696 63.1
Migut.B01074 Erythranthe guttata HOM05D005810 ORTHO05D007279 5.8e-239 831.2 719 61.6
Rhsim05G0160900 Rhododendron simsii HOM05D005810 ORTHO05D007279 7.9e-236 820.8 709 60.4
EL10Ac4g09107 Beta vulgaris HOM05D005810 ORTHO05D007279 2.5e-234 815.8 724 59.5
Glyma.19G243400 Glycine max HOM05D005810 ORTHO05D007279 2.4e-232 809.3 690 62.5
Psat3g008040 Pisum sativum HOM05D005810 ORTHO05D007279 2.4e-232 809.3 697 60.4
SalBow8G0563 Salvia bowleyana HOM05D005810 ORTHO05D007279 6.9e-232 807.7 725 60.8
MD12G1237800 Malus domestica HOM05D005810 ORTHO05D007279 4.2e-229 798.5 661 62.3
ECA232G3974 Erigeron canadensis HOM05D005810 ORTHO05D007279 7.2e-229 797.7 698 61.6
Medtr7g114850 Medicago truncatula HOM05D005810 ORTHO05D007279 3.0e-227 792.3 731 58.3
Ah.06g192190 Amaranthus hybridus HOM05D005810 ORTHO05D007279 5.0e-222 775.0 744 57.5
AUR62001034 Chenopodium quinoa HOM05D005810 ORTHO05D007279 5.0e-222 775.0 774 55.8
Nitab4.5_0005059g0010 Nicotiana tabacum HOM05D005810 ORTHO05D007279 2.1e-220 769.6 722 58.7
HanXRQChr12g0379621 Helianthus annuus HOM05D005810 ORTHO05D007279 7.9e-220 767.7 722 58.2
DCAR_006618 Daucus carota HOM05D005810 ORTHO05D007279 2.3e-219 766.1 691 59.5
CDE05G3473 Ceratophyllum demersum HOM05D005810 ORTHO05D007279 1.1e-218 763.8 691 58.0
vmacro14215 Vaccinium macrocarpon HOM05D005810 ORTHO05D007279 1.1e-216 757.3 784 53.7
CAN.G134.120 Capsicum annuum HOM05D005810 ORTHO05D007279 5.0e-214 748.4 659 61.6
Peaxi162Scf00282g00136 Petunia axillaris HOM05D005810 ORTHO05D007279 1.4e-213 746.9 718 57.5
CiPaw.07G064800 Carya illinoinensis HOM05D005810 ORTHO05D007279 3.0e-211 739.2 531 68.4
AUR62004921 Chenopodium quinoa HOM05D005810 ORTHO05D007279 3.0e-211 739.2 745 56.1
Lsat_1_v5_gn_5_37760 Lactuca sativa HOM05D005810 ORTHO05D007279 1.4e-208 730.3 608 62.8
Manes.08G132300 Manihot esculenta HOM05D005810 ORTHO05D007279 1.5e-202 710.3 572 64.2
ATR0665G477 Amborella trichopoda HOM05D005810 ORTHO05D007279 9.7e-202 707.6 708 55.2
Manes.09G154600 Manihot esculenta HOM05D005810 ORTHO05D007279 4.8e-201 705.3 494 72.1
Hund06958 Selenicereus undatus HOM05D005810 ORTHO05D007279 4.8e-201 705.3 740 55.3
HPP92_028013 Vanilla planifolia HOM05D005810 ORTHO05D007279 5.9e-199 698.4 685 56.4
Sc09g0003830 Simmondsia chinensis HOM05D005810 ORTHO05D007279 1.1e-197 694.1 573 63.5
Atru.chr2.784 Acer truncatum HOM05D005810 ORTHO05D007279 6.3e-193 678.3 443 76.7
FAN05G1843 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.1e-192 677.6 695 53.2
MBI11_g10322_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 3.1e-192 676.0 742 53.9
TPR.G6991 Trifolium pratense HOM05D005810 ORTHO05D007279 2.4e-184 649.8 564 60.5
CsaV3_1G045590 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.2e-183 647.5 555 62.0
Zm00001eb328420 Zea mays HOM05D005810 ORTHO05D007279 3.5e-183 646.0 721 51.6
unitig_37.g12634 Utricularia gibba HOM05D005810 ORTHO05D007279 2.9e-182 642.9 693 52.1
Cc02_g31830 Coffea canephora HOM05D005810 ORTHO05D007279 1.9e-181 640.2 494 66.2
Lj7C488G4 Lonicera japonica HOM05D005810 ORTHO05D007279 1.6e-180 637.1 701 53.8
Pp3c18_8560 Physcomitrium patens HOM05D005810 ORTHO05D007279 2.9e-177 626.3 714 47.3
Mapoly0092s0013 Marchantia polymorpha HOM05D005810 ORTHO05D007279 3.7e-169 599.4 739 46.3
Haze_04339 Corylus avellana HOM05D005810 ORTHO05D007279 5.1e-158 562.4 405 69.9
SMO351G0210 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 2.2e-153 547.0 704 43.8
Eucgr.B02108 Eucalyptus grandis HOM05D005810 ORTHO05D007279 3.0e-150 536.6 480 59.0
TAR365G0727 Trochodendron aralioides HOM05D005810 ORTHO05D007279 8.1e-148 528.5 491 58.0
Zm00001eb352870 Zea mays HOM05D005810 ORTHO05D007279 7.3e-141 505.4 410 63.4
Solyc01g097600.2 Solanum lycopersicum HOM05D005810 ORTHO05D007279 7.9e-135 485.3 373 66.8
Sopen01g041230 Solanum pennellii HOM05D005810 ORTHO05D007279 4.3e-133 479.6 347 69.5
FAN05G0700 Fragaria x ananassa HOM05D005810 ORTHO05D007279 2.1e-132 477.2 371 65.5
FAN14G4259 Fragaria x ananassa HOM05D005810 ORTHO05D007279 5.8e-130 469.2 380 63.7
FAN02G1150 Fragaria x ananassa HOM05D005810 ORTHO05D007279 1.3e-129 468.0 380 63.4
Os05g0509300 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 1.1e-120 438.3 360 61.9
Oeu060673.3 Olea europaea HOM05D005810 ORTHO05D007279 7.1e-120 435.6 788 38.6
CBR_g36821 Chara braunii HOM05D005810 ORTHO05D007279 1.8e-115 421.0 800 36.1
MCO09G788 Micromonas commoda HOM05D005810 ORTHO05D007279 9.0e-115 418.7 755 36.3
SMO364G0521 Selaginella moellendorffii HOM05D005810 ORTHO05D007279 3.3e-109 400.2 694 37.5
Dinv13659 Davidia involucrata HOM05D005810 ORTHO05D007279 8.2e-108 395.6 314 64.0
AagrBONN_evm.TU.Sc2ySwM_362.2883 Anthoceros agrestis HOM05D005810 ORTHO05D007279 6.1e-95 352.8 339 55.5
PRCOL_00005025 Prasinoderma coloniale HOM05D005810 ORTHO05D007279 3.3e-93 347.1 745 33.3
Os01g0773000 Oryza sativa ssp. japonica HOM05D005810 ORTHO05D007279 2.2e-92 344.4 321 56.4
Dinv13660 Davidia involucrata HOM05D005810 ORTHO05D007279 6.5e-89 332.8 311 59.2
CsaV3_UNG004080 Cucumis sativus L. HOM05D005810 ORTHO05D007279 9.8e-69 265.8 289 50.5
Nitab4.5_0005729g0080 Nicotiana tabacum HOM05D005810 ORTHO05D007279 1.6e-66 258.5 206 65.0
Zm00001eb281050 Zea mays HOM05D005810 ORTHO05D007279 5.9e-66 256.5 163 76.1
AagrBONN_evm.TU.Sc2ySwM_362.2882 Anthoceros agrestis HOM05D005810 ORTHO05D007279 7.3e-64 249.6 313 46.6
Nitab4.5_0005729g0060 Nicotiana tabacum HOM05D005810 ORTHO05D007279 4.7e-63 246.9 219 58.4
Zm00001eb054900 Zea mays HOM05D005810 ORTHO05D007279 3.0e-62 244.2 174 70.7
Cre01.g007651 Chlamydomonas reinhardtii HOM05D005810 ORTHO05D007279 5.2e-62 243.4 645 30.9
SGA_v2.0_scaffold92G28303 Striga asiatica HOM05D005810 ORTHO05D007279 1.2e-61 242.3 220 56.4
Haze_04340 Corylus avellana HOM05D005810 ORTHO05D007279 1.5e-61 241.9 250 56.4
HPP92_018612 Vanilla planifolia HOM05D005810 ORTHO05D007279 1.9e-48 198.4 176 57.4
Nitab4.5_0005729g0070 Nicotiana tabacum HOM05D005810 ORTHO05D007279 3.3e-48 197.6 264 46.6
Cc02_g31840 Coffea canephora HOM05D005810 ORTHO05D007279 1.1e-46 192.6 210 53.3
TPR.G21485 Trifolium pratense HOM05D005810 ORTHO05D007279 5.2e-46 190.3 168 57.7
Atru.chr2.785 Acer truncatum HOM05D005810 ORTHO05D007279 7.1e-43 179.9 163 58.3
SHI07783 Sapria himalayana HOM05D000023 ORTHO05D000014 1.6e-31 142.1 130 56.9
CsaV3_UNG004060 Cucumis sativus L. HOM05D005810 ORTHO05D007279 3.5e-26 124.4 141 51.1
ClCG06G009160 Citrullus lanatus HOM05D005810 ORTHO05D007279 5.6e-24 117.1 146 47.3
Sopen01g041220 Solanum pennellii HOM05D005810 ORTHO05D007279 2.1e-23 115.2 138 50.7
FAN09G1409 Fragaria x ananassa HOM05D005810 ORTHO05D007279 3.6e-23 114.4 157 47.1
CsaV3_1G045610 Cucumis sativus L. HOM05D005810 ORTHO05D007279 1.5e-21 109.0 132 48.5
Hma1.2p1_0083F.1_g042850 Hydrangea macrophylla HOM05D005810 ORTHO05D007279 3.4e-21 107.8 141 48.9
SHI07786 Sapria himalayana HOM05D005810 ORTHO05D007279 8.1e-15 86.7 67 67.2
Mapoly0081s0042 Marchantia polymorpha HOM05D005810 ORTHO05D007279 6.4e-12 77.0 51 68.6
Mapoly0027s0098 Marchantia polymorpha HOM05D005810 ORTHO05D007279 1.4e-11 75.9 76 52.6
MBI11_g02497_MAGBIO Magnolia biondii HOM05D005810 ORTHO05D007279 1.9e-11 75.5 105 45.7
CiPaw.07G064900 Carya illinoinensis HOM05D005810 ORTHO05D007279 1.5e-08 65.9 37 89.2


User provided reference genes

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