Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G14240 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 0.0e+00 1742.2 912 100.0
AT3G04260 Arabidopsis thaliana HOM05D002281 ORTHO05D006774 0.0e+00 1692.6 912 97.0
CARHR078410 Cardamine hirsuta HOM05D002281 ORTHO05D006774 0.0e+00 1650.6 910 94.8
Carub.0003s0347 Capsella rubella HOM05D002281 ORTHO05D006774 0.0e+00 1633.6 912 93.6
Sp3g03170 Schrenkiella parvula HOM05D002281 ORTHO05D006774 0.0e+00 1624.8 915 93.1
Thhalv10020015m.g Eutrema salsugineum HOM05D002281 ORTHO05D006774 0.0e+00 1619.0 912 93.0
BraA01t04526Z Brassica rapa HOM05D002281 ORTHO05D006774 0.0e+00 1583.5 920 89.9
BcaC09g47811 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1580.1 913 90.5
Aa31LG5G14740 Aethionema arabicum HOM05D002281 ORTHO05D006774 0.0e+00 1533.9 912 88.0
BcaNung04817 Brassica carinata HOM05D002281 ORTHO05D006774 0.0e+00 1513.0 913 87.6
THA.LOC104820754 Tarenaya hassleriana HOM05D002281 ORTHO05D006774 0.0e+00 1409.0 907 82.0
A01p40910 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1401.0 808 90.5
BNapus_Darmor_BZH_scaffold_78p00800 Brassica napus HOM05D002281 ORTHO05D006774 0.0e+00 1401.0 808 90.5
COL.COLO4_38180 Corchorus olitorius HOM05D002281 ORTHO05D006774 0.0e+00 1284.2 829 78.8
GSVIVG01026351001 Vitis vinifera HOM05D002281 ORTHO05D006774 0.0e+00 1283.9 888 73.8
CsaV3_1G044940 Cucumis sativus L. HOM05D002281 ORTHO05D006774 0.0e+00 1273.1 877 76.4
Sed0014107 Sechium edule HOM05D002281 ORTHO05D006774 0.0e+00 1267.3 874 75.4
MELO3C010108.2 Cucumis melo HOM05D002281 ORTHO05D006774 0.0e+00 1266.1 874 75.5
Gohir.A13G103100 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1266.1 901 75.0
Manes.09G145600 Manihot esculenta HOM05D002281 ORTHO05D006774 0.0e+00 1261.5 842 76.5
Nn3g19861 Nelumbo nucifera HOM05D002281 ORTHO05D006774 0.0e+00 1260.0 838 75.7
Oeu001246.1 Olea europaea HOM05D002281 ORTHO05D006774 0.0e+00 1258.4 905 71.8
Gohir.D13G106200 Gossypium hirsutum HOM05D002281 ORTHO05D006774 0.0e+00 1255.7 899 74.7
Gorai.013G119100 Gossypium raimondii HOM05D002281 ORTHO05D006774 0.0e+00 1254.2 899 73.3
Nitab4.5_0006530g0020 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1251.1 893 73.3
Actinidia06827 Actinidia chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1250.3 893 73.7
Ciclev10023441m.g Citrus clementina HOM05D002281 ORTHO05D006774 0.0e+00 1247.3 897 72.5
Eucgr.B02168 Eucalyptus grandis HOM05D002281 ORTHO05D006774 0.0e+00 1246.5 842 77.3
CSS0040843 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 0.0e+00 1246.1 833 75.6
Thecc.05G264900 Theobroma cacao HOM05D002281 ORTHO05D006774 0.0e+00 1245.0 896 72.2
FvH4_6g01350 Fragaria vesca HOM05D002281 ORTHO05D006774 0.0e+00 1244.2 909 72.6
RcHm_v2.0_Chr3g0448921 Rosa chinensis HOM05D002281 ORTHO05D006774 0.0e+00 1244.2 910 73.2
Nitab4.5_0001498g0040 Nicotiana tabacum HOM05D002281 ORTHO05D006774 0.0e+00 1243.4 896 72.7
Ca_09982_v3 Cicer arietinum L. HOM05D002281 ORTHO05D006774 0.0e+00 1237.6 905 72.8
SGA_v2.0_scaffold62G21474 Striga asiatica HOM05D002281 ORTHO05D006774 0.0e+00 1236.1 904 70.6
TWI60G1049 Tripterygium wilfordii HOM05D002281 ORTHO05D006774 0.0e+00 1234.9 899 71.6
PGR142G3453 Punica granatum HOM05D002281 ORTHO05D006774 0.0e+00 1234.6 839 74.9
Solyc04g050540.4 Solanum lycopersicum HOM05D002281 ORTHO05D006774 0.0e+00 1233.8 895 72.1
Sopen04g021370 Solanum pennellii HOM05D002281 ORTHO05D006774 0.0e+00 1232.6 895 72.0
FAN09G1447 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1229.9 910 72.2
FAN05G1274 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1227.2 908 72.1
FAN14G3852 Fragaria x ananassa HOM05D002281 ORTHO05D006774 0.0e+00 1227.2 920 71.4
CAN.G131.14 Capsicum annuum HOM05D002281 ORTHO05D006774 0.0e+00 1226.1 905 70.6
FAN14G5004 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1226.1 922 71.1
Potri.019G025100 Populus trichocarpa HOM05D002281 ORTHO05D006774 0.0e+00 1226.1 902 72.3
Lalb_Chr21g0311311 Lupinus albus HOM05D002281 ORTHO05D006774 0.0e+00 1225.7 838 74.2
MSTRG.27429 Avicennia marina HOM05D002281 ORTHO05D006774 0.0e+00 1224.5 871 71.1
Atru.chr2.1137 Acer truncatum HOM05D002281 ORTHO05D006774 0.0e+00 1223.8 897 71.8
Migut.F02048 Erythranthe guttata HOM05D002281 ORTHO05D006774 0.0e+00 1223.0 901 71.4
FAN05G1240 Fragaria x ananassa HOM05D002281 ORTHO05D005599 0.0e+00 1222.2 910 72.0
Aqoxy2G03815 Aquilegia oxysepala HOM05D002281 ORTHO05D006774 0.0e+00 1221.8 875 71.2
arahy.Tifrunner.gnm1.ann1.BY82ZN Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1221.8 893 71.7
CANSAT54G2391 Cannabis sativa HOM05D002281 ORTHO05D006774 0.0e+00 1221.1 854 75.8
Medtr1g079525 Medicago truncatula HOM05D002281 ORTHO05D006774 0.0e+00 1217.2 877 71.9
TAR365G0274 Trochodendron aralioides HOM05D002281 ORTHO05D006774 0.0e+00 1214.9 834 76.1
VMungo0720G2591 Vigna mungo HOM05D002281 ORTHO05D006774 0.0e+00 1205.7 875 72.5
Psat6g141840 Pisum sativum HOM05D002281 ORTHO05D006774 0.0e+00 1205.3 886 71.2
Cfa006305 Carpinus fangiana HOM05D002281 ORTHO05D006774 0.0e+00 1204.5 872 71.9
Lj5g0010111 Lotus japonicus HOM05D002281 ORTHO05D006774 0.0e+00 1201.4 897 71.3
TPR.G31600 Trifolium pratense HOM05D002281 ORTHO05D006774 0.0e+00 1201.0 885 71.6
PSO063G1810 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1200.7 843 74.6
DCAR_027530 Daucus carota HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 870 72.0
PSO017G1794 Papaver somniferum HOM05D002281 ORTHO05D006774 0.0e+00 1200.3 842 74.2
MD04G1234900 Malus domestica HOM05D002281 ORTHO05D006774 0.0e+00 1198.3 881 72.8
Glyma.20G221100 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1196.8 874 71.6
Phvul.L002432 Phaseolus vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1196.4 874 71.6
Glyma.10G168600 Glycine max HOM05D002281 ORTHO05D006774 0.0e+00 1187.6 872 71.3
Peaxi162Scf00071g00258 Petunia axillaris HOM05D002281 ORTHO05D006774 0.0e+00 1182.2 904 70.2
Lj2C48G13 Lonicera japonica HOM05D002281 ORTHO05D006774 0.0e+00 1181.8 897 67.4
ATR0787G153 Amborella trichopoda HOM05D002281 ORTHO05D006774 0.0e+00 1159.8 884 69.8
AUR62000641 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1144.0 898 66.4
Prupe.6G354700 Prunus persica HOM05D002281 ORTHO05D006774 0.0e+00 1138.3 829 69.6
AUR62006996 Chenopodium quinoa HOM05D002281 ORTHO05D006774 0.0e+00 1131.3 898 66.6
HanXRQChr14g0434631 Helianthus annuus HOM05D002281 ORTHO05D006774 0.0e+00 1125.5 833 67.5
Sabra19G0034700 Salix brachista HOM05D002281 ORTHO05D006774 0.0e+00 1120.1 903 67.7
Lsat_1_v5_gn_2_16580 Lactuca sativa HOM05D002281 ORTHO05D006774 0.0e+00 1118.6 834 68.8
Dinv05783 Davidia involucrata HOM05D002281 ORTHO05D006774 0.0e+00 1117.8 835 69.9
arahy.Tifrunner.gnm1.ann1.76MSW2 Arachis hypogaea HOM05D002281 ORTHO05D006774 0.0e+00 1115.5 893 67.5
ECA238G3638 Erigeron canadensis HOM05D002281 ORTHO05D006774 0.0e+00 1113.6 821 67.1
EL10Ac4g09786 Beta vulgaris HOM05D002281 ORTHO05D006774 0.0e+00 1112.4 900 66.4
Hund07166 Selenicereus undatus HOM05D002281 ORTHO05D006774 0.0e+00 1110.9 899 67.3
Os10g0462800 Oryza sativa ssp. japonica HOM05D002281 ORTHO05D006774 0.0e+00 1109.7 845 67.5
Zm00001eb046590 Zea mays HOM05D002281 ORTHO05D006774 0.0e+00 1097.0 843 67.7
unitig_899.g14420 Utricularia gibba HOM05D002281 ORTHO05D006774 0.0e+00 1083.2 905 63.0
HPP92_025553 Vanilla planifolia HOM05D002281 ORTHO05D006774 1.4e-269 933.3 875 60.0
Sc16g0010030 Simmondsia chinensis HOM05D002281 ORTHO05D006774 3.7e-254 882.1 628 73.1
SEGI_16679 Sequoiadendron giganteum HOM05D002281 ORTHO05D006774 6.1e-249 864.8 832 55.8
Sabra19G0037700 Salix brachista HOM05D002281 ORTHO05D006774 2.0e-236 823.2 623 71.4
Hma1.2p1_0123F.1_g058110 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 7.2e-234 814.7 572 72.9
CiPaw.07G076800 Carya illinoinensis HOM05D002281 ORTHO05D006774 9.4e-234 814.3 477 82.2
AagrBONN_evm.TU.Sc2ySwM_368.3437 Anthoceros agrestis HOM05D002281 ORTHO05D006774 8.0e-233 811.2 878 50.9
Cc09_g03090 Coffea canephora HOM05D002281 ORTHO05D006774 3.5e-228 795.8 508 76.8
Mapoly0031s0123 Marchantia polymorpha HOM05D002281 ORTHO05D006774 3.0e-216 756.1 829 49.0
ClCG03G011380 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.8e-208 730.3 518 76.6
Hma1.2p1_0123F.1_g058100 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 8.3e-206 721.5 539 69.6
Pp3c1_8170 Physcomitrium patens HOM05D002281 ORTHO05D006774 1.7e-187 660.6 877 45.4
SMO367G1266 Selaginella moellendorffii HOM05D002281 ORTHO05D006774 1.1e-186 657.9 847 42.9
CDE02G2074 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.2e-185 654.4 498 68.7
Haze_04484 Corylus avellana HOM05D002281 ORTHO05D006774 1.1e-173 614.8 582 59.8
vmacro19967 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 2.2e-158 563.9 471 68.8
CBR_g7996 Chara braunii HOM05D002281 ORTHO05D006774 3.2e-149 533.5 844 37.3
Rhsim05G0169000 Rhododendron simsii HOM05D002281 ORTHO05D006774 2.1e-145 520.8 432 65.5
Cc00_g32050 Coffea canephora HOM05D002281 ORTHO05D006774 8.5e-126 455.7 370 68.9
Cpa.g.sc51.34 Carica papaya HOM05D002281 ORTHO05D006774 8.0e-108 396.0 284 72.9
QL03p033056 Quercus lobata HOM05D002281 ORTHO05D006774 5.9e-95 353.2 208 82.7
CDE02G1511 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 5.6e-93 346.7 201 82.6
vmacro19969 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.0e-91 340.9 243 67.9
Cpa.g.sc51.36 Carica papaya HOM05D002281 ORTHO05D006774 8.9e-91 339.3 309 67.0
ClCG03G011350 Citrullus lanatus HOM05D002281 ORTHO05D006774 1.6e-87 328.6 234 72.6
Haze_04483 Corylus avellana HOM05D002281 ORTHO05D006774 2.7e-87 327.8 261 67.8
Hma1.2p1_0123F.1_g058090 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 5.6e-85 320.1 227 71.4
Actinidia39975 Actinidia chinensis HOM05D002281 ORTHO05D006774 3.1e-83 314.3 196 78.6
Ah.13g065840 Amaranthus hybridus HOM05D002281 ORTHO05D006774 2.0e-82 311.6 254 65.7
CiPaw.07G076900 Carya illinoinensis HOM05D002281 ORTHO05D006774 3.4e-82 310.8 190 80.0
AL685U10020 Arabidopsis lyrata HOM05D002281 ORTHO05D006774 9.9e-66 256.1 138 97.8
FAN14G5351 Fragaria x ananassa HOM05D002281 ORTHO05D006774 4.9e-49 200.7 164 63.4
Hma1.2p1_0463F.1_g158160 Hydrangea macrophylla HOM05D002281 ORTHO05D006774 2.4e-48 198.4 135 72.6
Actinidia39977 Actinidia chinensis HOM05D002281 ORTHO05D006774 1.2e-47 196.1 144 67.4
vmacro19968 Vaccinium macrocarpon HOM05D002281 ORTHO05D006774 3.0e-46 191.4 113 80.5
ClCG03G011370 Citrullus lanatus HOM05D002281 ORTHO05D006774 5.1e-46 190.7 111 82.9
Sopen01g022760 Solanum pennellii HOM05D002281 ORTHO05D006774 9.6e-37 159.8 197 46.2
QL03p032920 Quercus lobata HOM05D002281 ORTHO05D006774 2.1e-36 158.7 99 80.8
Cpa.g.sc51.35 Carica papaya HOM05D002281 ORTHO05D006774 2.0e-34 152.1 87 85.1
QL03p033074 Quercus lobata HOM05D002281 ORTHO05D006774 5.8e-34 150.6 91 83.5
Solyc01g015200.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.8e-22 112.5 167 40.7
BolC1t05755H Brassica oleracea HOM05D002281 ORTHO05D006774 6.7e-22 110.5 67 86.6
Solyc01g016930.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 6.3e-20 104.0 82 64.6
Solyc01g013970.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.4e-19 102.8 88 56.8
RcHm_v2.0_Chr1g0330901 Rosa chinensis HOM05D002281 ORTHO05D006774 1.2e-18 99.8 64 76.6
CDE08G0752 Ceratophyllum demersum HOM05D002281 ORTHO05D006774 1.1e-16 93.2 63 69.8
Solyc01g014000.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.5e-16 92.0 74 60.8
Solyc01g016920.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 1.2e-15 89.7 53 81.1
Actinidia39976 Actinidia chinensis HOM05D002281 ORTHO05D006774 6.7e-14 84.0 59 74.6
Solyc01g016870.1 Solanum lycopersicum HOM05D002281 ORTHO05D006774 2.8e-12 78.6 49 77.6
Os10g0460900 Oryza sativa ssp. japonica HOM05D006403 ORTHO05D008130 6.3e-12 77.4 72 55.6
Os10g0461100 Oryza sativa ssp. japonica HOM05D002933 ORTHO05D007742 6.3e-12 77.4 72 55.6
BraA01t04528Z Brassica rapa HOM05D002281 ORTHO05D006774 1.5e-10 72.8 49 79.6
BolC1t05758H Brassica oleracea HOM05D002281 ORTHO05D006774 5.9e-10 70.9 42 83.3
Cre12.g497350 Chlamydomonas reinhardtii HOM05D002281 ORTHO05D006774 5.9e-10 70.9 230 25.7
ClCG10G018100 Citrullus lanatus HOM05D006596 ORTHO05D008497 9.4e-08 63.5 200 25.5
TPR.G31597 Trifolium pratense HOM05D002281 ORTHO05D006774 2.7e-07 62.0 40 67.5
CSS0012562 Camellia sinensis var. sinensis HOM05D002281 ORTHO05D006774 1.4e-06 59.7 71 49.3
FvH4_6g01352 Fragaria vesca HOM05D002281 ORTHO05D006774 2.3e-06 58.9 107 40.2


User provided reference genes

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