Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G12410 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 6.6e-123 444.1 237 100.0
AT3G02950 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 2.6e-119 432.2 237 97.5
Carub.0003s0208 Capsella rubella HOM05D005180 ORTHO05D006136 1.1e-117 426.8 237 96.2
Thhalv10021437m.g Eutrema salsugineum HOM05D005180 ORTHO05D006136 1.6e-116 422.9 237 95.4
Sp3g02010 Schrenkiella parvula HOM05D005180 ORTHO05D006136 9.6e-114 413.7 237 94.5
CARHR076980 Cardamine hirsuta HOM05D005180 ORTHO05D006136 2.1e-113 412.5 237 92.0
C05p63850 Brassica napus HOM05D005180 ORTHO05D006136 1.2e-103 380.2 237 86.9
BolC5t35050H Brassica oleracea HOM05D005180 ORTHO05D006136 1.2e-103 380.2 237 86.9
A05p44170 Brassica napus HOM05D005180 ORTHO05D006136 1.0e-102 377.1 237 86.5
BraSC90t46693Z Brassica rapa HOM05D005180 ORTHO05D006136 1.0e-102 377.1 237 86.5
Aa31LG5G13450 Aethionema arabicum HOM05D005180 ORTHO05D006136 6.9e-96 354.4 210 90.0
AT5G16790 Arabidopsis thaliana HOM05D005180 ORTHO05D006136 1.2e-95 353.6 242 81.4
AL6G27810 Arabidopsis lyrata HOM05D005180 ORTHO05D006136 1.3e-94 350.1 242 80.2
CARHR196370 Cardamine hirsuta HOM05D005180 ORTHO05D006136 5.5e-93 344.7 232 80.6
THA.LOC104820896 Tarenaya hassleriana HOM05D005180 ORTHO05D006136 4.8e-89 331.6 207 84.1
Ciclev10021949m.g Citrus clementina HOM05D005180 ORTHO05D006136 2.5e-85 319.3 243 71.6
Potri.013G080200 Populus trichocarpa HOM05D005180 ORTHO05D006136 9.4e-85 317.4 242 69.4
vmacro07270 Vaccinium macrocarpon HOM05D005180 ORTHO05D006136 6.1e-84 314.7 241 70.5
Sed0003176 Sechium edule HOM05D005180 ORTHO05D006136 1.8e-83 313.2 243 70.8
Sabra13G0072900 Salix brachista HOM05D005180 ORTHO05D006136 1.1e-82 310.5 239 69.5
CsaV3_2G036420 Cucumis sativus L. HOM05D005180 ORTHO05D006136 4.4e-82 308.5 244 69.3
Gorai.003G054000 Gossypium raimondii HOM05D005180 ORTHO05D006136 9.7e-82 307.4 241 69.7
Lalb_Chr20g0121321 Lupinus albus HOM05D005180 ORTHO05D006136 1.3e-81 307.0 242 68.6
Solyc01g008990.4 Solanum lycopersicum HOM05D005180 ORTHO05D006136 1.3e-81 307.0 244 68.9
Gohir.D03G052000 Gossypium hirsutum HOM05D005180 ORTHO05D006136 2.2e-81 306.2 241 69.7
CAN.G714.6 Capsicum annuum HOM05D005180 ORTHO05D006136 2.8e-81 305.8 245 67.8
Sopen01g004480 Solanum pennellii HOM05D005180 ORTHO05D006136 2.8e-81 305.8 245 68.6
MELO3C021887.2 Cucumis melo HOM05D005180 ORTHO05D006136 3.7e-81 305.4 244 68.4
Nitab4.5_0000428g0030 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.8e-81 305.1 245 67.8
HanXRQChr01g0020751 Helianthus annuus HOM05D005180 ORTHO05D006136 1.1e-80 303.9 230 69.1
Prupe.8G027400 Prunus persica HOM05D005180 ORTHO05D006136 1.4e-80 303.5 239 69.5
PGSC0003DMG400022705 Solanum tuberosum HOM05D005180 ORTHO05D006136 1.4e-80 303.5 245 68.2
Lsat_1_v5_gn_1_93761 Lactuca sativa HOM05D005180 ORTHO05D006136 3.1e-80 302.4 229 67.7
Gohir.A02G141500 Gossypium hirsutum HOM05D005180 ORTHO05D006136 1.5e-79 300.1 205 77.6
MD10G1023900 Malus domestica HOM05D005180 ORTHO05D006136 1.5e-79 300.1 239 68.6
Peaxi162Scf00050g01910 Petunia axillaris HOM05D005180 ORTHO05D006136 2.0e-79 299.7 245 67.8
Duzib106G0272 Durio zibethinus HOM05D005180 ORTHO05D006136 2.6e-79 299.3 205 78.0
Sopen11g029830 Solanum pennellii HOM05D005180 ORTHO05D006136 2.6e-79 299.3 245 66.5
Thecc.05G216000 Theobroma cacao HOM05D005180 ORTHO05D006136 2.6e-79 299.3 204 77.9
ClCG09G016930 Citrullus lanatus HOM05D005180 ORTHO05D006136 4.5e-79 298.5 244 67.6
Nitab4.5_0002915g0060 Nicotiana tabacum HOM05D005180 ORTHO05D006136 4.5e-79 298.5 245 66.9
Hma1.2p1_1711F.1_g298680 Hydrangea macrophylla HOM05D005180 ORTHO05D006136 7.7e-79 297.7 207 74.9
Duzib177G0947 Durio zibethinus HOM05D005180 ORTHO05D006136 1.7e-78 296.6 204 77.5
TWI32G1096 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 1.7e-78 296.6 208 73.6
Ca_00419_v3 Cicer arietinum L. HOM05D005180 ORTHO05D006136 2.2e-78 296.2 240 68.3
Sc24g0001580 Simmondsia chinensis HOM05D005180 ORTHO05D006136 2.2e-78 296.2 242 65.7
TPR.G11750 Trifolium pratense HOM05D005180 ORTHO05D006136 2.9e-78 295.8 240 66.7
Eucgr.D02531 Eucalyptus grandis HOM05D005180 ORTHO05D006136 5.0e-78 295.0 211 72.5
RcHm_v2.0_Chr6g0275831 Rosa chinensis HOM05D005180 ORTHO05D006136 5.0e-78 295.0 236 67.8
TWI60G1377 Tripterygium wilfordii HOM05D005180 ORTHO05D006136 5.0e-78 295.0 207 73.9
Actinidia07010 Actinidia chinensis HOM05D005180 ORTHO05D006136 8.5e-78 294.3 207 75.8
COL.COLO4_15239 Corchorus olitorius HOM05D005180 ORTHO05D006136 1.1e-77 293.9 205 75.1
GSVIVG01037378001 Vitis vinifera HOM05D005180 ORTHO05D006136 1.5e-77 293.5 244 66.0
PSO063G1868 Papaver somniferum HOM05D005180 ORTHO05D006136 1.9e-77 293.1 248 63.7
QL09p023193 Quercus lobata HOM05D005180 ORTHO05D006136 1.9e-77 293.1 205 75.1
FAN27G2246 Fragaria x ananassa HOM05D005180 ORTHO05D006136 2.5e-77 292.7 237 67.9
Haze_00396 Corylus avellana HOM05D005180 ORTHO05D006136 3.2e-77 292.4 208 74.5
VMungo0540G0753 Vigna mungo HOM05D005180 ORTHO05D006136 3.2e-77 292.4 205 75.1
PGR004G2116 Punica granatum HOM05D005180 ORTHO05D006136 4.2e-77 292.0 230 67.8
Rhsim13G0203300 Rhododendron simsii HOM05D005180 ORTHO05D006136 4.2e-77 292.0 208 73.6
Rhsim04G0005300 Rhododendron simsii HOM05D005180 ORTHO05D006136 5.5e-77 291.6 208 73.1
CiPaw.06G034400 Carya illinoinensis HOM05D005180 ORTHO05D006136 7.2e-77 291.2 207 75.4
Phvul.006G178100 Phaseolus vulgaris HOM05D005180 ORTHO05D006136 7.2e-77 291.2 205 75.1
Psat1g199720 Pisum sativum HOM05D005180 ORTHO05D006136 7.2e-77 291.2 204 75.0
CAN.G1085.4 Capsicum annuum HOM05D005180 ORTHO05D006136 1.6e-76 290.0 244 65.6
FvH4_2g13990 Fragaria vesca HOM05D005180 ORTHO05D006136 1.6e-76 290.0 237 67.5
FAN20G0932 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-76 290.0 237 67.1
Nitab4.5_0002161g0010 Nicotiana tabacum HOM05D005180 ORTHO05D006136 1.6e-76 290.0 245 66.1
Manes.08G064700 Manihot esculenta HOM05D005180 ORTHO05D006136 2.7e-76 289.3 242 65.7
CSS0011166 Camellia sinensis var. sinensis HOM05D005180 ORTHO05D006136 3.6e-76 288.9 208 72.1
Aqoxy5G01637 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 6.1e-76 288.1 244 63.9
FAN24G0415 Fragaria x ananassa HOM05D005180 ORTHO05D006136 6.1e-76 288.1 237 67.1
ECA240G0118 Erigeron canadensis HOM05D005180 ORTHO05D006136 8.0e-76 287.7 229 65.1
FAN15G0398 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.4e-75 287.0 237 67.1
Cfa016051 Carpinus fangiana HOM05D005180 ORTHO05D006136 1.8e-75 286.6 208 73.6
Dinv35897 Davidia involucrata HOM05D005180 ORTHO05D006136 1.8e-75 286.6 225 68.4
MSTRG.18479 Avicennia marina HOM05D005180 ORTHO05D006136 2.3e-75 286.2 205 73.7
Medtr2g015520 Medicago truncatula HOM05D005180 ORTHO05D006136 3.0e-75 285.8 207 73.4
Nitab4.5_0002567g0080 Nicotiana tabacum HOM05D005180 ORTHO05D006136 3.0e-75 285.8 245 63.7
HPP92_017562 Vanilla planifolia HOM05D005180 ORTHO05D006136 3.0e-75 285.8 198 74.7
Actinidia24488 Actinidia chinensis HOM05D005180 ORTHO05D006136 8.8e-75 284.3 188 78.7
Ah.04g161260 Amaranthus hybridus HOM05D005180 ORTHO05D006136 8.8e-75 284.3 241 65.6
Glyma.13G232100 Glycine max HOM05D005180 ORTHO05D006136 1.1e-74 283.9 206 73.8
Glyma.15G080600 Glycine max HOM05D005180 ORTHO05D006136 1.5e-74 283.5 241 65.6
unitig_64.g29770 Utricularia gibba HOM05D005180 ORTHO05D006136 1.5e-74 283.5 245 64.1
Cc01_g07100 Coffea canephora HOM05D005180 ORTHO05D006136 2.0e-74 283.1 207 72.5
AUR62005241 Chenopodium quinoa HOM05D005180 ORTHO05D006136 2.6e-74 282.7 242 64.9
SGA_v2.0_scaffold29G12131 Striga asiatica HOM05D005180 ORTHO05D006136 3.3e-74 282.3 242 63.6
Nn8g41146 Nelumbo nucifera HOM05D005180 ORTHO05D006136 4.4e-74 282.0 208 71.2
PGSC0003DMG400027389 Solanum tuberosum HOM05D005180 ORTHO05D006136 4.4e-74 282.0 244 64.3
unitig_62.g23868 Utricularia gibba HOM05D005180 ORTHO05D006136 4.4e-74 282.0 229 67.2
SalBow6G2568 Salvia bowleyana HOM05D005180 ORTHO05D006136 9.7e-74 280.8 205 72.2
Atru.chr5.727 Acer truncatum HOM05D005180 ORTHO05D006136 1.3e-73 280.4 198 74.7
AUR62000723 Chenopodium quinoa HOM05D005180 ORTHO05D006136 1.7e-73 280.0 242 64.9
CANSAT56G1354 Cannabis sativa HOM05D005180 ORTHO05D006136 2.2e-73 279.6 245 64.1
TAR374G0042 Trochodendron aralioides HOM05D005180 ORTHO05D006136 2.8e-73 279.3 207 71.0
Os08g0160000 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 4.8e-73 278.5 213 69.5
DCAR_016143 Daucus carota HOM05D005180 ORTHO05D006136 6.3e-73 278.1 208 69.7
Cpa.g.sc14.58 Carica papaya HOM05D005180 ORTHO05D006136 1.4e-72 276.9 183 79.2
EL10Ac6g14989 Beta vulgaris HOM05D005180 ORTHO05D006136 2.4e-72 276.2 209 70.3
Oeu025945.2 Olea europaea HOM05D005180 ORTHO05D006136 3.1e-72 275.8 200 72.5
Lj6g0006583 Lotus japonicus HOM05D005180 ORTHO05D006136 4.1e-72 275.4 208 72.1
Migut.D00701 Erythranthe guttata HOM05D005180 ORTHO05D006136 5.3e-72 275.0 205 73.2
Oeu032043.1 Olea europaea HOM05D005180 ORTHO05D006136 5.3e-72 275.0 207 69.6
Potri.013G082900 Populus trichocarpa HOM05D005180 ORTHO05D006136 7.0e-72 274.6 197 73.6
arahy.Tifrunner.gnm1.ann1.F0IXSY Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-71 273.9 207 69.6
arahy.Tifrunner.gnm1.ann1.ZTB6Z9 Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-71 273.9 207 69.6
arahy.Tifrunner.gnm1.ann1.ZY7ZXH Arachis hypogaea HOM05D005180 ORTHO05D006136 1.2e-71 273.9 207 70.0
Zm00001eb403820 Zea mays HOM05D005180 ORTHO05D006136 1.6e-71 273.5 210 69.0
CDE02G3757 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 5.9e-71 271.6 224 63.8
MBI19_g22663_MAGBIO Magnolia biondii HOM05D005180 ORTHO05D006136 1.7e-70 270.0 206 68.9
arahy.Tifrunner.gnm1.ann1.T3IE7U Arachis hypogaea HOM05D005180 ORTHO05D006136 5.0e-70 268.5 235 63.0
PSO782G2417 Papaver somniferum HOM05D005180 ORTHO05D006136 5.0e-70 268.5 207 68.1
Dinv16767 Davidia involucrata HOM05D005180 ORTHO05D006136 6.5e-70 268.1 213 69.0
Lj2P827T12 Lonicera japonica HOM05D005180 ORTHO05D006136 6.5e-70 268.1 201 71.1
Aqoxy3G02241 Aquilegia oxysepala HOM05D005180 ORTHO05D006136 1.5e-69 266.9 210 67.1
Os05g0569800 Oryza sativa ssp. japonica HOM05D005180 ORTHO05D006136 2.7e-68 262.7 230 62.2
Zm00001eb001480 Zea mays HOM05D005180 ORTHO05D006136 1.0e-67 260.8 213 66.7
Hund05844 Selenicereus undatus HOM05D005180 ORTHO05D006136 4.0e-67 258.8 206 68.4
ATR0829G067 Amborella trichopoda HOM05D005180 ORTHO05D006136 1.7e-65 253.4 207 63.8
Carub.0006s1501 Capsella rubella HOM05D005180 ORTHO05D006136 4.8e-65 251.9 159 84.3
SMO356G0075 Selaginella moellendorffii HOM05D005180 ORTHO05D006136 1.4e-64 250.4 211 62.6
Mapoly0076s0002 Marchantia polymorpha HOM05D005180 ORTHO05D006136 4.1e-64 248.8 198 66.2
AagrBONN_evm.TU.Sc2ySwM_344.1992 Anthoceros agrestis HOM05D005180 ORTHO05D006136 3.8e-62 242.3 198 64.6
Pp3c15_21620 Physcomitrium patens HOM05D005180 ORTHO05D006136 2.7e-60 236.1 222 56.8
CDE11G0176 Ceratophyllum demersum HOM05D005180 ORTHO05D006136 8.0e-60 234.6 175 68.6
Prupe.8G026900 Prunus persica HOM05D005180 ORTHO05D006136 1.2e-50 204.1 218 56.4
MD05G1022700 Malus domestica HOM05D005180 ORTHO05D006136 6.3e-49 198.4 165 66.7
SEGI_37847 Sequoiadendron giganteum HOM05D005180 ORTHO05D006136 6.3e-49 198.4 189 57.7
SHI53994 Sapria himalayana HOM05D005180 ORTHO05D006136 7.0e-48 194.9 231 49.8
MD00G1125800 Malus domestica HOM05D005180 ORTHO05D006136 7.0e-40 168.3 135 67.4
Prupe.8G027200 Prunus persica HOM05D005180 ORTHO05D006136 3.3e-37 159.5 113 70.8
CBR_g51237 Chara braunii HOM05D005180 ORTHO05D006136 4.3e-37 159.1 174 50.0
CBR_g4125 Chara braunii HOM05D005180 ORTHO05D006136 4.4e-34 149.1 171 47.4
MD05G1023000 Malus domestica HOM05D005180 ORTHO05D006136 1.7e-33 147.1 218 46.8
Glyma.07G081200 Glycine max HOM05D005180 ORTHO05D006136 3.0e-30 136.3 104 67.3
MCO09G003 Micromonas commoda HOM05D005180 ORTHO05D006136 3.6e-28 129.4 188 41.5
SHI47254 Sapria himalayana HOM05D005180 ORTHO05D006136 2.9e-25 119.8 115 53.0
Prupe.8G026600 Prunus persica HOM05D005180 ORTHO05D006136 1.9e-24 117.1 86 66.3
Solyc11g072180.3 Solanum lycopersicum HOM05D005180 ORTHO05D006136 4.0e-19 99.4 90 65.6
Cre03.g182350 Chlamydomonas reinhardtii HOM05D005180 ORTHO05D006136 4.9e-17 92.4 195 32.3
FvH4_4g00100 Fragaria vesca HOM05D005180 ORTHO05D006136 1.4e-16 90.9 76 64.5
PRCOL_00001653 Prasinoderma coloniale HOM05D005180 ORTHO05D006136 2.5e-13 80.1 189 30.7
SHI47253 Sapria himalayana HOM05D005180 ORTHO05D006136 5.8e-10 68.9 58 63.8
FAN23G1307 Fragaria x ananassa HOM05D005180 ORTHO05D006136 1.6e-07 60.8 57 61.4
FAN23G1155 Fragaria x ananassa HOM05D001255 ORTHO05D011996 4.6e-07 59.3 74 52.7
FAN23G2223 Fragaria x ananassa HOM05D001255 ORTHO05D006136 2.3e-06 57.0 50 62.0


User provided reference genes

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