Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL3G10280 Arabidopsis lyrata HOM05D002248 ORTHO05D006121 4.8e-111 404.4 196 100.0
CARHR048130 Cardamine hirsuta HOM05D002248 ORTHO05D006121 1.1e-30 137.5 88 75.0
AL2G11870 Arabidopsis lyrata HOM05D002248 ORTHO05D006121 1.9e-30 136.7 88 75.0
BcaB02g08607 Brassica carinata HOM05D002248 ORTHO05D006121 2.5e-30 136.3 88 75.0
Thhalv10023677m.g Eutrema salsugineum HOM05D002248 ORTHO05D006121 2.5e-30 136.3 88 75.0
Sp2g01240 Schrenkiella parvula HOM05D002248 ORTHO05D006121 2.5e-30 136.3 88 75.0
Sabra16G0213500 Salix brachista HOM05D002248 ORTHO05D006121 4.2e-30 135.6 88 70.5
BcaC04g22707 Brassica carinata HOM05D002248 ORTHO05D006121 7.1e-30 134.8 94 72.3
CsaV3_2G034200 Cucumis sativus L. HOM05D002248 ORTHO05D006121 7.1e-30 134.8 88 72.7
ATR0561G092 Amborella trichopoda HOM05D002248 ORTHO05D006121 9.3e-30 134.4 95 64.2
A09p13560 Brassica napus HOM05D002248 ORTHO05D006121 9.3e-30 134.4 89 74.2
AT3G01850 Arabidopsis thaliana HOM05D002248 ORTHO05D006121 1.2e-29 134.0 88 73.9
C09p16070 Brassica napus HOM05D002248 ORTHO05D006121 2.1e-29 133.3 101 68.3
AL2G11950 Arabidopsis lyrata HOM05D002248 ORTHO05D006121 2.7e-29 132.9 66 90.9
Cpa.g.sc171.31 Carica papaya HOM05D002248 ORTHO05D006121 3.5e-29 132.5 88 72.7
Haze_14855 Corylus avellana HOM05D002248 ORTHO05D006121 3.5e-29 132.5 106 64.2
SGA_v2.0_scaffold44G16906 Striga asiatica HOM05D002248 ORTHO05D006121 3.5e-29 132.5 88 71.6
AT1G63290 Arabidopsis thaliana HOM05D002248 ORTHO05D006121 4.6e-29 132.1 88 72.7
arahy.Tifrunner.gnm1.ann1.I7CGDJ Arachis hypogaea HOM05D002248 ORTHO05D006121 4.6e-29 132.1 88 68.2
arahy.Tifrunner.gnm1.ann1.SWM3ME Arachis hypogaea HOM05D002248 ORTHO05D006121 4.6e-29 132.1 88 68.2
Duzib147G0482 Durio zibethinus HOM05D002248 ORTHO05D006121 6.0e-29 131.7 88 71.6
Gohir.A07G226900 Gossypium hirsutum HOM05D002248 ORTHO05D006121 6.0e-29 131.7 88 71.6
Gorai.001G269600 Gossypium raimondii HOM05D002248 ORTHO05D006121 6.0e-29 131.7 88 71.6
Sed0004149 Sechium edule HOM05D002248 ORTHO05D006121 6.0e-29 131.7 88 71.6
CANSAT64G1027 Cannabis sativa HOM05D002248 ORTHO05D006121 1.3e-28 130.6 88 70.5
CiPaw.04G035300 Carya illinoinensis HOM05D002248 ORTHO05D006121 1.3e-28 130.6 88 71.6
Gohir.D07G234100 Gossypium hirsutum HOM05D002248 ORTHO05D006121 1.3e-28 130.6 88 70.5
unitig_8.g4492 Utricularia gibba HOM05D002248 ORTHO05D006121 1.3e-28 130.6 88 70.5
Actinidia05910 Actinidia chinensis HOM05D002248 ORTHO05D006121 1.8e-28 130.2 88 70.5
BcaB08g35694 Brassica carinata HOM05D002248 ORTHO05D006121 1.8e-28 130.2 88 71.6
COL.COLO4_17170 Corchorus olitorius HOM05D002248 ORTHO05D006121 1.8e-28 130.2 88 70.5
Gorai.011G091900 Gossypium raimondii HOM05D002248 ORTHO05D006121 1.8e-28 130.2 88 70.5
RcHm_v2.0_Chr2g0175221 Rosa chinensis HOM05D002248 ORTHO05D006121 1.8e-28 130.2 93 66.7
THA.LOC104819103 Tarenaya hassleriana HOM05D002248 ORTHO05D006121 1.8e-28 130.2 88 69.3
Atru.chr6.2534 Acer truncatum HOM05D002248 ORTHO05D006121 2.3e-28 129.8 88 70.5
Ciclev10016576m.g Citrus clementina HOM05D002248 ORTHO05D006121 2.3e-28 129.8 88 69.3
FAN05G5252 Fragaria x ananassa HOM05D002248 ORTHO05D006121 2.3e-28 129.8 97 66.0
HanXRQChr10g0294971 Helianthus annuus HOM05D002248 ORTHO05D006121 2.3e-28 129.8 88 69.3
Prupe.3G303800 Prunus persica HOM05D002248 ORTHO05D006121 2.3e-28 129.8 88 69.3
MELO3C008202.2 Cucumis melo HOM05D002248 ORTHO05D006121 3.0e-28 129.4 88 70.5
Migut.K01454 Erythranthe guttata HOM05D002248 ORTHO05D006121 3.0e-28 129.4 88 70.5
MD09G1013300 Malus domestica HOM05D002248 ORTHO05D006121 3.0e-28 129.4 88 69.3
MD17G1014000 Malus domestica HOM05D002248 ORTHO05D006121 3.0e-28 129.4 88 69.3
Thecc.04G033500 Theobroma cacao HOM05D002248 ORTHO05D006121 3.0e-28 129.4 88 69.3
GSVIVG01001810001 Vitis vinifera HOM05D002248 ORTHO05D006121 3.0e-28 129.4 64 89.1
Duzib187G0529 Durio zibethinus HOM05D002248 ORTHO05D006121 5.1e-28 128.6 88 69.3
CDE02G2761 Ceratophyllum demersum HOM05D002248 ORTHO05D006121 6.7e-28 128.3 88 67.0
ClCG11G007010 Citrullus lanatus HOM05D002248 ORTHO05D006121 6.7e-28 128.3 70 82.9
Glyma.16G059000 Glycine max HOM05D002248 ORTHO05D006121 6.7e-28 128.3 88 68.2
TWI36G0847 Tripterygium wilfordii HOM05D002248 ORTHO05D006121 6.7e-28 128.3 88 69.3
TAR133G0005 Trochodendron aralioides HOM05D002248 ORTHO05D006121 1.1e-27 127.5 88 68.2
Glyma.19G088400 Glycine max HOM05D002248 ORTHO05D006121 1.5e-27 127.1 88 67.0
Os09g0505700 Oryza sativa ssp. japonica HOM05D002248 ORTHO05D006121 1.5e-27 127.1 88 67.0
QL02p071808 Quercus lobata HOM05D002248 ORTHO05D006121 1.5e-27 127.1 64 87.5
Aqoxy3G01501 Aquilegia oxysepala HOM05D002248 ORTHO05D006121 1.9e-27 126.7 64 85.9
Cc00_g30800 Coffea canephora HOM05D002248 ORTHO05D006121 1.9e-27 126.7 65 81.5
HanXRQChr09g0256131 Helianthus annuus HOM05D002248 ORTHO05D006121 1.9e-27 126.7 88 68.2
Lalb_Chr24g0403361 Lupinus albus HOM05D002248 ORTHO05D006121 1.9e-27 126.7 88 65.9
Solyc05g007260.3 Solanum lycopersicum HOM05D002248 ORTHO05D006121 1.9e-27 126.7 88 65.9
Sopen05g003220 Solanum pennellii HOM05D002248 ORTHO05D006121 1.9e-27 126.7 88 65.9
EL10Ac2g03081 Beta vulgaris HOM05D002248 ORTHO05D006121 2.5e-27 126.3 88 69.3
Dinv25670 Davidia involucrata HOM05D002248 ORTHO05D006121 2.5e-27 126.3 88 67.0
Lalb_Chr14g0363251 Lupinus albus HOM05D002248 ORTHO05D006121 2.5e-27 126.3 88 64.8
SalBow4G2075 Salvia bowleyana HOM05D002248 ORTHO05D006121 2.5e-27 126.3 88 70.5
VMungo1383G3614 Vigna mungo HOM05D002248 ORTHO05D006121 2.5e-27 126.3 88 67.0
FvH4_6g53180 Fragaria vesca HOM05D002248 ORTHO05D006121 3.3e-27 125.9 64 84.4
PSO017G6202 Papaver somniferum HOM05D002248 ORTHO05D006121 3.3e-27 125.9 88 65.9
DCAR_021771 Daucus carota HOM05D002248 ORTHO05D006121 4.3e-27 125.6 88 67.0
Medtr7g029630 Medicago truncatula HOM05D002248 ORTHO05D006121 4.3e-27 125.6 88 64.8
Potri.001G332700 Populus trichocarpa HOM05D002248 ORTHO05D006121 4.3e-27 125.6 88 68.2
Oeu013646.2 Olea europaea HOM05D002248 ORTHO05D006121 5.6e-27 125.2 88 65.9
arahy.Tifrunner.gnm1.ann1.BV4TL7 Arachis hypogaea HOM05D002248 ORTHO05D006121 7.4e-27 124.8 64 84.4
FAN02G0458 Fragaria x ananassa HOM05D002248 ORTHO05D006121 7.4e-27 124.8 64 82.8
Phvul.001G095400 Phaseolus vulgaris HOM05D002248 ORTHO05D006121 7.4e-27 124.8 88 67.0
SGA_v2.0_scaffold15G07199 Striga asiatica HOM05D002248 ORTHO05D006121 7.4e-27 124.8 91 67.0
vmacro05946 Vaccinium macrocarpon HOM05D002248 ORTHO05D006121 9.6e-27 124.4 75 74.7
Hma1.2p1_0049F.1_g028350 Hydrangea macrophylla HOM05D002248 ORTHO05D006121 1.3e-26 124.0 90 64.4
Lj1g0004245 Lotus japonicus HOM05D002248 ORTHO05D006121 1.3e-26 124.0 88 64.8
Nitab4.5_0000703g0040 Nicotiana tabacum HOM05D002248 ORTHO05D006121 1.3e-26 124.0 97 60.8
PSO478G3476 Papaver somniferum HOM05D002248 ORTHO05D006121 1.3e-26 124.0 88 64.8
CSS0013884 Camellia sinensis var. sinensis HOM05D002248 ORTHO05D006121 1.6e-26 123.6 88 67.0
Lsat_1_v5_gn_7_5841 Lactuca sativa HOM05D002248 ORTHO05D006121 1.6e-26 123.6 91 67.0
Nitab4.5_0004485g0060 Nicotiana tabacum HOM05D002248 ORTHO05D006121 1.6e-26 123.6 103 59.2
Rhsim10G0007500 Rhododendron simsii HOM05D002248 ORTHO05D006121 2.1e-26 123.2 88 65.9
DCAR_021774 Daucus carota HOM05D002248 ORTHO05D006121 2.8e-26 122.9 88 67.0
PGR142G0429 Punica granatum HOM05D002248 ORTHO05D006121 2.8e-26 122.9 78 67.9
Zm00001eb317710 Zea mays HOM05D002248 ORTHO05D006121 2.8e-26 122.9 88 65.9
SMO358G0518 Selaginella moellendorffii HOM05D002248 ORTHO05D006121 3.7e-26 122.5 87 64.4
Ah.12g062600 Amaranthus hybridus HOM05D002248 ORTHO05D006121 4.8e-26 122.1 64 84.4
CAN.G1207.6 Capsicum annuum HOM05D002248 ORTHO05D006121 8.2e-26 121.3 93 62.4
arahy.Tifrunner.gnm1.ann1.ZZYW0T Arachis hypogaea HOM05D002248 ORTHO05D006121 1.4e-25 120.6 79 70.9
Lju41A51T48 Lonicera japonica HOM05D002248 ORTHO05D006121 1.8e-25 120.2 63 79.4
TAR629G1214 Trochodendron aralioides HOM05D002248 ORTHO05D006121 1.8e-25 120.2 64 79.7
Psat3g176560 Pisum sativum HOM05D002248 ORTHO05D006121 2.4e-25 119.8 63 79.4
TPR.G38298 Trifolium pratense HOM05D002248 ORTHO05D006121 4.0e-25 119.0 63 77.8
Eucgr.I01657 Eucalyptus grandis HOM05D002248 ORTHO05D006121 5.3e-25 118.6 63 81.0
SEGI_35316 Sequoiadendron giganteum HOM05D002248 ORTHO05D006121 5.3e-25 118.6 64 76.6
Nn4g22362 Nelumbo nucifera HOM05D002248 ORTHO05D006121 6.9e-25 118.2 63 81.0
Gohir.D10G084500 Gossypium hirsutum HOM05D002248 ORTHO05D006121 1.2e-24 117.5 95 63.2
Sc09g0003450 Simmondsia chinensis HOM05D002248 ORTHO05D006121 1.5e-24 117.1 88 63.6
Hund03352 Selenicereus undatus HOM05D002248 ORTHO05D006121 2.6e-24 116.3 91 64.8
MBI11_g07446_MAGBIO Magnolia biondii HOM05D002248 ORTHO05D006121 1.3e-23 114.0 75 69.3
ECA232G1712 Erigeron canadensis HOM05D002248 ORTHO05D006121 3.8e-23 112.5 88 64.8
Lj7A608T48 Lonicera japonica HOM05D002248 ORTHO05D006121 7.1e-22 108.2 81 63.0
Mapoly0209s0004 Marchantia polymorpha HOM05D002248 ORTHO05D006121 4.6e-21 105.5 63 71.4
Carub.0002s0154 Capsella rubella HOM05D002248 ORTHO05D006121 2.5e-19 99.8 51 84.3
Peaxi162Scf00541g00613 Petunia axillaris HOM05D002248 ORTHO05D006121 2.8e-18 96.3 81 60.5
Cre02.g116450 Chlamydomonas reinhardtii HOM05D002248 ORTHO05D006121 8.2e-18 94.7 91 51.6
MCO07G630 Micromonas commoda HOM05D002248 ORTHO05D006121 8.2e-18 94.7 99 49.5
PSO170G2498 Papaver somniferum HOM05D002248 ORTHO05D006121 1.4e-17 94.0 90 50.0
FAN14G0887 Fragaria x ananassa HOM05D002248 ORTHO05D006121 1.0e-15 87.8 93 50.5
Aa31LG5G10990 Aethionema arabicum HOM05D002248 ORTHO05D006121 1.3e-15 87.4 43 88.4
FAN09G4710 Fragaria x ananassa HOM05D002248 ORTHO05D006121 3.8e-15 85.9 44 81.8
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 6.5e-15 85.1 42 88.1
HPP92_003198 Vanilla planifolia HOM05D002248 ORTHO05D006121 3.2e-14 82.8 42 83.3
Pp3c18_13640 Physcomitrium patens HOM05D002248 ORTHO05D006121 2.1e-13 80.1 41 78.0
Hma1.2p1_1278F.1_g272430 Hydrangea macrophylla HOM05D002248 ORTHO05D006121 6.1e-13 78.6 69 56.5
AUR62018151 Chenopodium quinoa HOM05D002248 ORTHO05D006121 3.9e-12 75.9 50 70.0
PRCOL_00001251 Prasinoderma coloniale HOM05D002248 ORTHO05D006121 6.7e-12 75.1 117 41.0
Gohir.A10G159500 Gossypium hirsutum HOM05D002248 ORTHO05D006121 6.3e-10 68.6 35 82.9
MCO11G321 Micromonas commoda HOM05D002248 ORTHO05D006121 1.4e-09 67.4 83 43.4
SHI03903 Sapria himalayana HOM05D002248 ORTHO05D006121 1.4e-09 67.4 38 63.2
Haze_26206 Corylus avellana HOM05D002248 ORTHO05D006121 9.1e-09 64.7 84 38.1
PGSC0003DMG400023059 Solanum tuberosum HOM05D002248 ORTHO05D006121 1.2e-08 64.3 35 74.3
Manes.17G104200 Manihot esculenta HOM05D002248 ORTHO05D006121 2.0e-08 63.5 35 71.4
Manes.15G159200 Manihot esculenta HOM05D002248 ORTHO05D006121 3.4e-08 62.8 35 71.4
MSTRG.3084 Avicennia marina HOM05D002248 ORTHO05D006121 5.9e-08 62.0 35 68.6
PRCOL_00000587 Prasinoderma coloniale HOM05D002248 ORTHO05D006007 1.7e-07 60.5 78 38.5
AUR62042564 Chenopodium quinoa HOM05D002248 ORTHO05D006121 2.9e-07 59.7 43 65.1
Haze_26749 Corylus avellana HOM05D002248 ORTHO05D006007 2.9e-07 59.7 81 34.6
SMO172G0181 Selaginella moellendorffii HOM05D002248 ORTHO05D006007 3.2e-06 56.2 80 38.8
AagrBONN_evm.TU.Sc2ySwM_117.3292 Anthoceros agrestis HOM05D002248 ORTHO05D006007 5.5e-06 55.5 80 37.5
Pp3s30_31 Physcomitrium patens HOM05D002248 ORTHO05D314064 5.5e-06 55.5 78 37.2
Cre12.g511900 Chlamydomonas reinhardtii HOM05D002248 ORTHO05D006007 7.2e-06 55.1 90 35.6
Mapoly0016s0134 Marchantia polymorpha HOM05D002248 ORTHO05D006007 7.2e-06 55.1 80 36.2
SalBow5G3171 Salvia bowleyana HOM05D002248 ORTHO05D006007 9.4e-06 54.7 80 36.2


User provided reference genes

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