Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G36770 Arabidopsis lyrata HOM05D005978 ORTHO05D007472 0.0e+00 2324.3 1169 100.0
AT1G76630 Arabidopsis thaliana HOM05D005978 ORTHO05D007472 0.0e+00 2246.5 1169 96.7
CARHR070190 Cardamine hirsuta HOM05D005978 ORTHO05D007472 0.0e+00 2148.2 1165 92.6
Carub.0002s2353 Capsella rubella HOM05D005978 ORTHO05D007472 0.0e+00 2100.5 1169 91.4
A07p42300 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 2084.7 1171 89.9
BraA07t31758Z Brassica rapa HOM05D005978 ORTHO05D007472 0.0e+00 2080.4 1171 89.8
Thhalv10018029m.g Eutrema salsugineum HOM05D005978 ORTHO05D007472 0.0e+00 2064.3 1169 89.4
BcaC08g47175 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 2063.5 1170 88.6
C06p50880 Brassica napus HOM05D005978 ORTHO05D007472 0.0e+00 2060.0 1170 89.0
BolC6t40113H Brassica oleracea HOM05D005978 ORTHO05D007472 0.0e+00 2048.9 1170 88.5
Sp5g31790 Schrenkiella parvula HOM05D005978 ORTHO05D007472 0.0e+00 2045.4 1169 89.1
BcaC08g47227 Brassica carinata HOM05D005978 ORTHO05D007472 0.0e+00 2041.2 1169 88.4
Aa31LG4G6720 Aethionema arabicum HOM05D005978 ORTHO05D007472 0.0e+00 1839.3 1169 79.8
THA.LOC104812025 Tarenaya hassleriana HOM05D005978 ORTHO05D007472 0.0e+00 1746.1 1166 75.9
Atru.chr13.20 Acer truncatum HOM05D005978 ORTHO05D007472 0.0e+00 1493.8 1167 64.9
Thecc.08G097500 Theobroma cacao HOM05D005978 ORTHO05D007472 0.0e+00 1477.2 1168 63.0
TWI36G1144 Tripterygium wilfordii HOM05D005978 ORTHO05D007472 0.0e+00 1474.1 1170 63.2
Manes.18G000350 Manihot esculenta HOM05D005978 ORTHO05D007472 0.0e+00 1458.0 1172 61.3
Ciclev10003766m.g Citrus clementina HOM05D005978 ORTHO05D007472 0.0e+00 1451.0 1163 63.0
Gorai.009G185700 Gossypium raimondii HOM05D005978 ORTHO05D007472 0.0e+00 1445.6 1179 62.2
Dinv30321 Davidia involucrata HOM05D005978 ORTHO05D007472 0.0e+00 1436.4 1173 62.1
CiPaw.08G079000 Carya illinoinensis HOM05D005978 ORTHO05D007472 0.0e+00 1432.2 1169 61.5
QL02p016300 Quercus lobata HOM05D005978 ORTHO05D007472 0.0e+00 1420.6 1385 53.9
Potri.002G001700 Populus trichocarpa HOM05D005978 ORTHO05D007472 0.0e+00 1417.1 1169 60.0
Cpa.g.sc36.98 Carica papaya HOM05D005978 ORTHO05D007472 0.0e+00 1407.5 1176 61.1
TAR376G0648 Trochodendron aralioides HOM05D005978 ORTHO05D007472 0.0e+00 1407.1 1167 60.2
GSVIVG01013460001 Vitis vinifera HOM05D005978 ORTHO05D007472 0.0e+00 1396.3 1169 60.4
Prupe.5G001100 Prunus persica HOM05D005978 ORTHO05D007472 0.0e+00 1394.0 1172 61.9
MD06G1000600 Malus domestica HOM05D005978 ORTHO05D007472 0.0e+00 1392.5 1172 60.6
CANSAT64G0954 Cannabis sativa HOM05D005978 ORTHO05D007472 0.0e+00 1382.5 1188 59.3
COL.COLO4_12265 Corchorus olitorius HOM05D005978 ORTHO05D007472 0.0e+00 1377.8 1170 60.5
Haze_22888 Corylus avellana HOM05D005978 ORTHO05D007472 0.0e+00 1373.2 1119 62.6
Sabra02G0001200 Salix brachista HOM05D005978 ORTHO05D007472 0.0e+00 1369.8 1209 57.5
Actinidia15540 Actinidia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1365.5 1170 59.3
Duzib041G0071 Durio zibethinus HOM05D005978 ORTHO05D007472 0.0e+00 1359.7 1173 59.3
Glyma.01G245200 Glycine max HOM05D005978 ORTHO05D007472 0.0e+00 1359.0 1168 57.7
Nn6g31553 Nelumbo nucifera HOM05D005978 ORTHO05D007472 0.0e+00 1354.0 1176 59.1
RcHm_v2.0_Chr7g0217581 Rosa chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1352.4 1172 59.5
Medtr5g004660 Medicago truncatula HOM05D005978 ORTHO05D007472 0.0e+00 1349.7 1169 58.1
FAN18G0791 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1346.6 1172 59.1
FvH4_5g26690 Fragaria vesca HOM05D005978 ORTHO05D007472 0.0e+00 1346.3 1172 59.1
PGR031G1913 Punica granatum HOM05D005978 ORTHO05D007472 0.0e+00 1340.1 1172 58.4
Eucgr.F03624 Eucalyptus grandis HOM05D005978 ORTHO05D007472 0.0e+00 1339.7 1172 58.0
Lalb_Chr16g0376221 Lupinus albus HOM05D005978 ORTHO05D007472 0.0e+00 1335.1 1160 57.5
arahy.Tifrunner.gnm1.ann1.BP04P6 Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1329.7 1171 56.4
TPR.G21607 Trifolium pratense HOM05D005978 ORTHO05D007472 0.0e+00 1326.2 1172 57.7
FAN13G0154 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1325.1 1172 58.2
Phvul.002G054600 Phaseolus vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1324.3 1166 56.7
Lj1g0010496 Lotus japonicus HOM05D005978 ORTHO05D007472 0.0e+00 1317.0 1174 56.6
arahy.Tifrunner.gnm1.ann1.U7IYJM Arachis hypogaea HOM05D005978 ORTHO05D007472 0.0e+00 1295.8 1171 55.4
ClCG11G019200 Citrullus lanatus HOM05D005978 ORTHO05D007472 0.0e+00 1295.0 1202 56.5
FAN04G0649 Fragaria x ananassa HOM05D005978 ORTHO05D007472 0.0e+00 1279.6 1172 56.8
Gohir.A05G177300 Gossypium hirsutum HOM05D005978 ORTHO05D007472 0.0e+00 1274.6 1037 62.3
Rhsim06G0000600 Rhododendron simsii HOM05D005978 ORTHO05D007472 0.0e+00 1270.8 1378 50.8
Cc10_g00090 Coffea canephora HOM05D005978 ORTHO05D007472 0.0e+00 1268.8 1162 57.0
Sed0020914 Sechium edule HOM05D005978 ORTHO05D007472 0.0e+00 1255.4 1155 56.2
Migut.M00377 Erythranthe guttata HOM05D005978 ORTHO05D007472 0.0e+00 1252.7 1170 54.9
MELO3C017073.2 Cucumis melo HOM05D005978 ORTHO05D007472 0.0e+00 1249.6 1165 56.5
CsaV3_4G037800 Cucumis sativus L. HOM05D005978 ORTHO05D007472 0.0e+00 1236.5 1165 55.7
PSO675G6081 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1227.6 1168 54.2
PSO541G4404 Papaver somniferum HOM05D005978 ORTHO05D007472 0.0e+00 1226.1 1168 54.1
HanXRQChr16g0512201 Helianthus annuus HOM05D005978 ORTHO05D007472 0.0e+00 1224.9 1166 53.9
ECA232G2674 Erigeron canadensis HOM05D005978 ORTHO05D007472 0.0e+00 1224.2 1162 54.6
AUR62042533 Chenopodium quinoa HOM05D005978 ORTHO05D007472 0.0e+00 1221.5 1177 53.5
Sopen04g036610 Solanum pennellii HOM05D005978 ORTHO05D007472 0.0e+00 1220.7 1175 53.4
MSTRG.14837 Avicennia marina HOM05D005978 ORTHO05D007472 0.0e+00 1210.7 1168 53.5
MBI04_g23900_MAGBIO Magnolia biondii HOM05D005978 ORTHO05D007472 0.0e+00 1208.0 1209 52.6
Psat4g213520 Pisum sativum HOM05D005978 ORTHO05D007472 0.0e+00 1206.8 1054 58.3
Hund05194 Selenicereus undatus HOM05D005978 ORTHO05D007472 0.0e+00 1206.8 1167 53.7
Lsat_1_v5_gn_9_48081 Lactuca sativa HOM05D005978 ORTHO05D007472 0.0e+00 1206.4 1165 54.0
Aqoxy1G03258 Aquilegia oxysepala HOM05D005978 ORTHO05D007472 0.0e+00 1205.3 1164 52.7
CAN.G1330.32 Capsicum annuum HOM05D005978 ORTHO05D007472 0.0e+00 1200.7 1177 53.0
SalBow7G3859 Salvia bowleyana HOM05D005978 ORTHO05D007472 0.0e+00 1192.6 1168 52.8
Ca_24335_v3 Cicer arietinum L. HOM05D005978 ORTHO05D007472 0.0e+00 1161.4 1047 56.7
EL10Ac1g01856 Beta vulgaris HOM05D005978 ORTHO05D007472 0.0e+00 1152.1 1170 51.7
HPP92_007456 Vanilla planifolia HOM05D005978 ORTHO05D007472 0.0e+00 1144.8 1173 51.0
SGA_v2.0_scaffold34G13893 Striga asiatica HOM05D005978 ORTHO05D007472 0.0e+00 1142.9 1134 52.8
Sc26g0004780 Simmondsia chinensis HOM05D005978 ORTHO05D007472 0.0e+00 1108.2 1170 50.0
Os10g0548200 Oryza sativa ssp. japonica HOM05D005978 ORTHO05D007472 0.0e+00 1075.1 1184 47.6
Zm00001eb022830 Zea mays HOM05D005978 ORTHO05D007472 2.8e-307 1058.9 1178 48.0
ATR0605G322 Amborella trichopoda HOM05D005978 ORTHO05D007472 8.2e-299 1030.8 1110 48.8
Solyc04g082980.2 Solanum lycopersicum HOM05D005978 ORTHO05D007472 6.5e-296 1021.1 1115 49.4
FAN08G2840 Fragaria x ananassa HOM05D005978 ORTHO05D007472 1.0e-293 1013.8 1101 51.1
AUR62035192 Chenopodium quinoa HOM05D005978 ORTHO05D007472 8.2e-291 1004.2 1160 47.9
Peaxi162Scf00385g01220 Petunia axillaris HOM05D005978 ORTHO05D007472 1.2e-289 1000.3 1210 45.8
SEGI_31935 Sequoiadendron giganteum HOM05D005978 ORTHO05D007472 4.5e-281 971.8 1175 44.9
DCAR_022963 Daucus carota HOM05D005978 ORTHO05D007472 1.4e-261 907.1 834 55.8
CSS0007221 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 3.4e-252 875.9 755 59.6
Gohir.D05G180700 Gossypium hirsutum HOM05D005978 ORTHO05D007472 6.0e-241 838.6 715 60.4
Ah.11g042550 Amaranthus hybridus HOM05D005978 ORTHO05D007472 2.6e-236 823.2 785 55.4
unitig_899.g15248 Utricularia gibba HOM05D005978 ORTHO05D007472 6.2e-230 802.0 1096 44.3
Nitab4.5_0003364g0020 Nicotiana tabacum HOM05D005978 ORTHO05D007472 4.8e-198 696.0 759 49.4
Mapoly0002s0268 Marchantia polymorpha HOM05D005978 ORTHO05D007472 6.5e-187 659.1 1193 35.4
Oeu013500.1 Olea europaea HOM05D005978 ORTHO05D007472 6.7e-176 622.5 591 53.6
Pp3c9_11110 Physcomitrium patens HOM05D005978 ORTHO05D007472 3.3e-167 593.6 1189 34.3
CDE04G2732 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.1e-146 525.4 615 47.6
Dinv04441 Davidia involucrata HOM05D005978 ORTHO05D007472 2.5e-146 524.2 425 63.5
SMO236G0050 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 5.0e-139 500.0 1117 33.0
Dinv04443 Davidia involucrata HOM05D005978 ORTHO05D007472 2.5e-138 497.7 465 54.0
AagrBONN_evm.TU.Sc2ySwM_228.3882 Anthoceros agrestis HOM05D005978 ORTHO05D007472 1.4e-128 465.3 846 35.1
vmacro21736 Vaccinium macrocarpon HOM05D005978 ORTHO05D007472 2.7e-124 451.1 391 57.0
Nitab4.5_0003364g0080 Nicotiana tabacum HOM05D005978 ORTHO05D007472 3.8e-110 404.1 420 52.1
SMO236G0024 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 1.9e-101 375.2 523 40.2
Ah.11g042540 Amaranthus hybridus HOM05D005978 ORTHO05D007472 1.8e-91 342.0 419 42.2
SHI07937 Sapria himalayana HOM05D005978 ORTHO05D007472 1.1e-90 339.3 280 61.1
Nn6g31559 Nelumbo nucifera HOM05D005978 ORTHO05D007472 1.3e-81 309.3 209 69.4
CBR_g3864 Chara braunii HOM05D000019 ORTHO05D000048 9.4e-69 266.5 1111 25.6
Gohir.D05G180650 Gossypium hirsutum HOM05D005978 ORTHO05D007472 7.9e-68 263.5 204 63.2
Oeu013502.1 Olea europaea HOM05D005978 ORTHO05D007472 4.1e-64 251.1 180 64.4
Dinv04442 Davidia involucrata HOM05D005978 ORTHO05D007472 1.8e-51 209.1 180 59.4
CDE04G3357 Ceratophyllum demersum HOM05D005978 ORTHO05D007472 1.2e-47 196.4 269 41.6
arahy.Tifrunner.gnm1.ann1.G030KM Arachis hypogaea HOM05D005978 ORTHO05D007472 8.5e-46 190.3 235 44.3
CSS0044033 Camellia sinensis var. sinensis HOM05D005978 ORTHO05D007472 6.1e-36 157.5 123 60.2
SMO124G0009 Selaginella moellendorffii HOM05D005978 ORTHO05D007472 3.0e-27 128.6 322 31.7
SHI07938 Sapria himalayana HOM05D005978 ORTHO05D007472 3.2e-24 118.6 154 44.8
MCO08G135 Micromonas commoda HOM05D005978 ORTHO05D007472 1.2e-20 106.7 494 24.9
Rhsim06G0014600 Rhododendron simsii HOM05D000267 ORTHO05D002764 4.1e-16 91.7 100 49.0
TAR628G1490 Trochodendron aralioides HOM05D005978 ORTHO05D007472 4.6e-15 88.2 58 62.1
C07p29320 Brassica napus HOM05D005978 ORTHO05D007472 1.1e-13 83.6 46 78.3
BolC7t43475H Brassica oleracea HOM05D005978 ORTHO05D007472 2.5e-13 82.4 46 78.3
arahy.Tifrunner.gnm1.ann1.IN83YX Arachis hypogaea HOM05D005978 ORTHO05D007472 3.3e-13 82.0 68 55.9
Cre12.g493550 Chlamydomonas reinhardtii HOM05D005978 ORTHO05D007472 4.3e-13 81.6 351 22.2
arahy.Tifrunner.gnm1.ann1.HEP796 Arachis hypogaea HOM05D005978 ORTHO05D007472 1.2e-10 73.6 53 62.3
Solyc04g082990.3 Solanum lycopersicum HOM05D005978 ORTHO05D004271 7.5e-10 70.9 78 42.3
Prupe.4G218400 Prunus persica HOM05D005978 ORTHO05D007472 2.2e-09 69.3 51 66.7
SHI07939 Sapria himalayana HOM05D005978 ORTHO05D007472 4.1e-08 65.1 114 38.6
arahy.Tifrunner.gnm1.ann1.CI9DXK Arachis hypogaea HOM05D005978 ORTHO05D007472 2.7e-07 62.4 58 58.6


User provided reference genes

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