Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G36240 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 4.0e-53 211.8 171 100.0
Carub.0002s2307 Capsella rubella HOM05D008570 ORTHO05D005639 1.7e-35 153.3 132 87.1
AT1G76180 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 1.6e-30 136.7 190 63.7
BcaC08g47283 Brassica carinata HOM05D008570 ORTHO05D005639 1.3e-27 127.1 136 80.1
BolC6t40053H Brassica oleracea HOM05D008570 ORTHO05D005639 1.3e-27 127.1 136 80.1
BolC2t09364H Brassica oleracea HOM05D008570 ORTHO05D005639 1.1e-26 124.0 134 79.9
A07p28610 Brassica napus HOM05D008570 ORTHO05D005639 4.6e-25 118.6 134 76.9
C02p33360 Brassica napus HOM05D008570 ORTHO05D005639 3.0e-24 115.9 134 76.9
BcaC08g47112 Brassica carinata HOM05D008570 ORTHO05D005639 4.3e-23 112.1 134 75.4
Sp5g31320 Schrenkiella parvula HOM05D008570 ORTHO05D005639 7.4e-23 111.3 73 84.9
C06p50130 Brassica napus HOM05D008570 ORTHO05D005639 1.3e-22 110.5 136 72.1
BraA07t31704Z Brassica rapa HOM05D008570 ORTHO05D005639 6.2e-22 108.2 135 72.6
A07p41750 Brassica napus HOM05D008570 ORTHO05D005639 8.1e-22 107.8 136 72.1
BraA02t07079Z Brassica rapa HOM05D008570 ORTHO05D005639 3.1e-21 105.9 134 73.9
CARHR069730 Cardamine hirsuta HOM05D008570 ORTHO05D005639 4.0e-21 105.5 137 71.5
Thhalv10019152m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 5.3e-21 105.1 138 71.0
A02p20480 Brassica napus HOM05D008570 ORTHO05D005639 6.9e-21 104.8 134 73.1
THA.LOC104809672 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 1.5e-20 103.6 131 73.3
BcaB05g24972 Brassica carinata HOM05D008570 ORTHO05D005639 1.3e-19 100.5 135 71.1
Aa31LG4G6290 Aethionema arabicum HOM05D008570 ORTHO05D005639 1.1e-15 87.4 196 50.5
C06p32190 Brassica napus HOM05D008570 ORTHO05D005639 4.3e-15 85.5 134 65.7
AL1G33370 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 9.6e-15 84.3 109 54.1
AT1G20450 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 6.2e-14 81.6 87 62.1
Sp1g18160 Schrenkiella parvula HOM05D008570 ORTHO05D005639 1.1e-13 80.9 217 51.2
AT1G20440 Arabidopsis thaliana HOM05D008570 ORTHO05D005639 1.4e-13 80.5 152 54.6
CARHR020900 Cardamine hirsuta HOM05D008570 ORTHO05D005639 1.4e-13 80.5 87 56.3
Thhalv10008313m.g Eutrema salsugineum HOM05D008570 ORTHO05D005639 2.4e-13 79.7 73 64.4
THA.LOC104813763 Tarenaya hassleriana HOM05D008570 ORTHO05D005639 3.1e-13 79.3 71 67.6
BNapus_Darmor_BZH_scaffold_170p00020 Brassica napus HOM05D008570 ORTHO05D005639 2.0e-12 76.6 155 52.9
BcaC05g25955 Brassica carinata HOM05D008570 ORTHO05D005639 2.6e-12 76.3 156 53.2
C05p19040 Brassica napus HOM05D008570 ORTHO05D005639 2.6e-12 76.3 156 53.2
BolC5t30605H Brassica oleracea HOM05D008570 ORTHO05D005639 2.6e-12 76.3 156 51.9
Carub.0001s1991 Capsella rubella HOM05D008570 ORTHO05D005639 3.4e-12 75.9 112 50.0
BcaNung03383 Brassica carinata HOM05D008570 ORTHO05D005639 4.5e-12 75.5 89 57.3
C07p23020 Brassica napus HOM05D008570 ORTHO05D005639 4.5e-12 75.5 89 57.3
BolC7t42843H Brassica oleracea HOM05D008570 ORTHO05D005639 4.5e-12 75.5 89 57.3
BcaB07g32047 Brassica carinata HOM05D008570 ORTHO05D005639 5.8e-12 75.1 164 53.0
Carub.0001s1992 Capsella rubella HOM05D008570 ORTHO05D005639 5.8e-12 75.1 156 57.1
BraA06t24754Z Brassica rapa HOM05D008570 ORTHO05D005639 7.6e-12 74.7 95 56.8
Lsat_1_v5_gn_8_27820 Lactuca sativa HOM05D008201 ORTHO05D005639 7.6e-12 74.7 64 65.6
BraA07t29305Z Brassica rapa HOM05D008570 ORTHO05D005639 3.8e-11 72.4 89 56.2
A07p15670 Brassica napus HOM05D008570 ORTHO05D005639 6.5e-11 71.6 89 56.2
A07p15780 Brassica napus HOM05D008570 ORTHO05D005639 6.5e-11 71.6 89 56.2
BcaB03g14320 Brassica carinata HOM05D008570 ORTHO05D005639 7.1e-10 68.2 90 52.2
Manes.05G140400 Manihot esculenta HOM05D008201 ORTHO05D005639 9.3e-10 67.8 84 56.0
Lj4A14T47 Lonicera japonica HOM05D008201 ORTHO05D005639 2.7e-09 66.2 107 46.7
Aa31LG7G4750 Aethionema arabicum HOM05D008570 ORTHO05D059195 4.6e-09 65.5 51 72.5
ECA233G2943 Erigeron canadensis HOM05D002022 ORTHO05D002056 6.1e-09 65.1 71 50.7
CSS0003901 Camellia sinensis var. sinensis HOM05D008201 ORTHO05D005639 2.3e-08 63.2 86 47.7
Lsat_1_v5_gn_8_28441 Lactuca sativa HOM05D008570 ORTHO05D005639 2.3e-08 63.2 101 60.4
AL1G33380 Arabidopsis lyrata HOM05D008570 ORTHO05D005639 5.1e-08 62.0 90 52.2
arahy.Tifrunner.gnm1.ann1.DA1J6X Arachis hypogaea HOM05D008201 ORTHO05D005639 6.7e-08 61.6 64 57.8
arahy.Tifrunner.gnm1.ann1.QP4M0U Arachis hypogaea HOM05D008201 ORTHO05D005639 6.7e-08 61.6 64 57.8
Glyma.04G009400 Glycine max HOM05D008201 ORTHO05D005639 2.5e-07 59.7 66 62.1
Medtr3g117290 Medicago truncatula HOM05D015205 ORTHO05D005639 2.5e-07 59.7 138 53.6
Aqoxy6G01838 Aquilegia oxysepala HOM05D008201 ORTHO05D005639 5.7e-07 58.5 86 43.0
Cc10_g00870 Coffea canephora HOM05D014976 ORTHO05D005639 9.7e-07 57.8 74 47.3
HanXRQChr08g0216051 Helianthus annuus HOM05D008201 ORTHO05D005639 1.6e-06 57.0 81 48.1
TPR.G32200 Trifolium pratense HOM05D015205 ORTHO05D005639 1.6e-06 57.0 91 44.0
Potri.005G248100 Populus trichocarpa HOM05D008201 ORTHO05D005639 2.2e-06 56.6 67 52.2
Sabra05G0191700 Salix brachista HOM05D008201 ORTHO05D005639 2.2e-06 56.6 135 39.3
Hund01744 Selenicereus undatus HOM05D017236 ORTHO05D005639 2.2e-06 56.6 67 50.7
vmacro04391 Vaccinium macrocarpon HOM05D008201 ORTHO05D005639 2.8e-06 56.2 78 50.0
EL10Ac1g02014 Beta vulgaris HOM05D017236 ORTHO05D005639 4.8e-06 55.5 68 54.4
TAR376G0148 Trochodendron aralioides HOM05D008201 ORTHO05D005639 4.8e-06 55.5 81 49.4


User provided reference genes

Program Settings