Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G26440 Arabidopsis lyrata HOM05D004549 ORTHO05D005390 4.1e-75 285.0 190 100.0
AT1G67740 Arabidopsis thaliana HOM05D004549 ORTHO05D005390 1.1e-70 270.4 190 93.2
Carub.0002s1417 Capsella rubella HOM05D004549 ORTHO05D005390 1.4e-70 270.0 190 92.1
CARHR060320 Cardamine hirsuta HOM05D004549 ORTHO05D005390 8.1e-63 244.2 183 73.8
Sp5g22750 Schrenkiella parvula HOM05D004549 ORTHO05D005390 2.7e-58 229.2 194 68.6
BolC6t39200H Brassica oleracea HOM05D004549 ORTHO05D005390 4.6e-58 228.4 192 68.2
C06p42290 Brassica napus HOM05D004549 ORTHO05D005390 1.0e-57 227.3 194 70.1
BraA02t06507Z Brassica rapa HOM05D004549 ORTHO05D005390 1.0e-57 227.3 199 66.3
BcaB03g15371 Brassica carinata HOM05D004549 ORTHO05D005390 2.3e-57 226.1 201 67.7
A07p32430 Brassica napus HOM05D004549 ORTHO05D005390 2.3e-57 226.1 200 66.0
BraA07t30866Z Brassica rapa HOM05D004549 ORTHO05D005390 2.3e-57 226.1 200 66.0
BcaC03g14868 Brassica carinata HOM05D004549 ORTHO05D005390 6.6e-57 224.6 199 66.3
C02p23390 Brassica napus HOM05D004549 ORTHO05D005390 6.6e-57 224.6 199 66.3
BolC2t08472H Brassica oleracea HOM05D004549 ORTHO05D005390 6.6e-57 224.6 199 66.3
BcaB03g15168 Brassica carinata HOM05D004549 ORTHO05D005390 1.1e-56 223.8 193 72.0
A07p34290 Brassica napus HOM05D004549 ORTHO05D005390 1.5e-56 223.4 194 69.6
A02p14440 Brassica napus HOM05D004549 ORTHO05D005390 3.3e-56 222.2 199 65.3
BcaC08g46197 Brassica carinata HOM05D004549 ORTHO05D005390 4.3e-56 221.9 194 70.1
BraA07t31058Z Brassica rapa HOM05D004549 ORTHO05D005390 4.3e-56 221.9 194 69.1
C06p38460 Brassica napus HOM05D004549 ORTHO05D005390 5.6e-56 221.5 199 65.3
BolC6t38943H Brassica oleracea HOM05D004549 ORTHO05D005390 5.6e-56 221.5 199 65.3
Thhalv10019165m.g Eutrema salsugineum HOM05D004549 ORTHO05D005390 8.1e-55 217.6 200 66.5
BcaB05g24311 Brassica carinata HOM05D004549 ORTHO05D005390 2.6e-53 212.6 202 63.9
BcaC08g46043 Brassica carinata HOM05D004549 ORTHO05D005390 4.9e-52 208.4 195 63.6
Aa31LG4G12260 Aethionema arabicum HOM05D004549 ORTHO05D005390 1.5e-48 196.8 192 71.4
THA.LOC104807755 Tarenaya hassleriana HOM05D004549 ORTHO05D005390 6.9e-46 188.0 192 58.9
ClCG08G017510 Citrullus lanatus HOM05D004549 ORTHO05D005390 6.9e-38 161.4 205 51.7
Medtr8g089610 Medicago truncatula HOM05D004549 ORTHO05D005390 9.0e-38 161.0 203 50.2
MELO3C010708.2 Cucumis melo HOM05D004549 ORTHO05D005390 2.6e-37 159.5 205 50.2
CsaV3_2G025120 Cucumis sativus L. HOM05D004549 ORTHO05D005390 3.4e-37 159.1 205 49.8
Haze_12303 Corylus avellana HOM05D004549 ORTHO05D005390 5.8e-37 158.3 202 50.0
Actinidia08109 Actinidia chinensis HOM05D004549 ORTHO05D005390 7.6e-37 157.9 203 51.2
Psat7g059720 Pisum sativum HOM05D004549 ORTHO05D005390 7.6e-37 157.9 199 48.7
Sed0013558 Sechium edule HOM05D004549 ORTHO05D005390 7.6e-37 157.9 205 49.8
Dinv11022 Davidia involucrata HOM05D004549 ORTHO05D005390 1.0e-36 157.5 197 50.8
Manes.13G019200 Manihot esculenta HOM05D004549 ORTHO05D005390 1.0e-36 157.5 198 51.0
Cfa009269 Carpinus fangiana HOM05D004549 ORTHO05D005390 1.7e-36 156.8 204 50.5
Manes.12G018800 Manihot esculenta HOM05D004549 ORTHO05D005390 1.7e-36 156.8 200 50.5
TAR374G0110 Trochodendron aralioides HOM05D004549 ORTHO05D005390 3.8e-36 155.6 203 49.3
Nn4g22506 Nelumbo nucifera HOM05D004549 ORTHO05D005390 4.9e-36 155.2 205 50.2
arahy.Tifrunner.gnm1.ann1.J2LHWB Arachis hypogaea HOM05D004549 ORTHO05D005390 1.1e-35 154.1 205 47.3
PGR102G3304 Punica granatum HOM05D004549 ORTHO05D005390 1.9e-35 153.3 204 49.5
TPR.G6278 Trifolium pratense HOM05D004549 ORTHO05D005390 1.9e-35 153.3 202 47.5
Potri.010G052000 Populus trichocarpa HOM05D004549 ORTHO05D005390 2.5e-35 152.9 202 49.5
TAR622G0384 Trochodendron aralioides HOM05D004549 ORTHO05D005390 2.5e-35 152.9 203 48.3
Migut.E00226 Erythranthe guttata HOM05D004549 ORTHO05D005390 3.2e-35 152.5 195 50.8
Glyma.11G245400 Glycine max HOM05D004549 ORTHO05D005390 3.2e-35 152.5 202 49.5
CsaV3_5G030690 Cucumis sativus L. HOM05D004549 ORTHO05D005354 5.5e-35 151.8 193 52.3
Sabra08G0138600 Salix brachista HOM05D004549 ORTHO05D005390 5.5e-35 151.8 197 48.7
Atru.chr11.2199 Acer truncatum HOM05D004549 ORTHO05D005390 7.1e-35 151.4 204 47.5
Potri.008G181900 Populus trichocarpa HOM05D004549 ORTHO05D005390 7.1e-35 151.4 199 50.3
Oeu059785.1 Olea europaea HOM05D004549 ORTHO05D005390 1.2e-34 150.6 184 50.0
Psat5g094200 Pisum sativum HOM05D004549 ORTHO05D005390 1.2e-34 150.6 207 46.9
Eucgr.B03236 Eucalyptus grandis HOM05D004549 ORTHO05D005390 1.6e-34 150.2 202 49.0
Gohir.A01G156900 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.6e-34 150.2 206 47.6
Gohir.D01G153400 Gossypium hirsutum HOM05D004549 ORTHO05D005390 1.6e-34 150.2 206 47.6
Gorai.002G190000 Gossypium raimondii HOM05D004549 ORTHO05D005390 1.6e-34 150.2 206 47.6
Rhsim12G0037700 Rhododendron simsii HOM05D004549 ORTHO05D005390 1.6e-34 150.2 201 48.8
CANSAT01G2573 Cannabis sativa HOM05D004549 ORTHO05D005390 2.7e-34 149.4 207 45.4
FAN17G2166 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.5e-34 149.1 203 50.2
FAN22G0462 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.5e-34 149.1 203 50.2
FAN22G0861 Fragaria x ananassa HOM05D004549 ORTHO05D005390 3.5e-34 149.1 203 50.2
Sed0000703 Sechium edule HOM05D004549 ORTHO05D005390 3.5e-34 149.1 190 50.0
ECA246G5237 Erigeron canadensis HOM05D004549 ORTHO05D005390 4.6e-34 148.7 192 51.6
FvH4_4g25080 Fragaria vesca HOM05D004549 ORTHO05D005390 4.6e-34 148.7 204 50.0
FAN07G0129 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.6e-34 148.7 203 50.2
FAN12G3122 Fragaria x ananassa HOM05D004549 ORTHO05D005390 4.6e-34 148.7 204 50.0
Hma1.2p1_0079F.1_g041330 Hydrangea macrophylla HOM05D004549 ORTHO05D005390 4.6e-34 148.7 201 47.3
Lsat_1_v5_gn_3_29100 Lactuca sativa HOM05D004549 ORTHO05D005390 6.0e-34 148.3 198 53.5
Duzib251G0883 Durio zibethinus HOM05D004549 ORTHO05D005390 7.9e-34 147.9 208 49.0
CiPaw.11G070800 Carya illinoinensis HOM05D004549 ORTHO05D005390 1.0e-33 147.5 208 45.2
Cpa.g.sc122.10 Carica papaya HOM05D004549 ORTHO05D005390 1.3e-33 147.1 203 49.8
Sopen10g028800 Solanum pennellii HOM05D004549 ORTHO05D005390 1.3e-33 147.1 198 49.0
SGA_v2.0_scaffold87G27112 Striga asiatica HOM05D004549 ORTHO05D005390 1.3e-33 147.1 198 47.5
CSS0012497 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 1.8e-33 146.7 201 50.2
COL.COLO4_23543 Corchorus olitorius HOM05D004549 ORTHO05D005390 1.8e-33 146.7 207 48.8
Prupe.1G239600 Prunus persica HOM05D004549 ORTHO05D005390 2.3e-33 146.4 205 48.3
TWI18G0700 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 2.3e-33 146.4 205 46.8
Ciclev10032789m.g Citrus clementina HOM05D004549 ORTHO05D005390 3.0e-33 146.0 208 47.1
MELO3C011911.2 Cucumis melo HOM05D004549 ORTHO05D005390 3.9e-33 145.6 192 51.6
Lalb_Chr23g0277771 Lupinus albus HOM05D004549 ORTHO05D005390 6.7e-33 144.8 198 51.0
TWI36G1485 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 6.7e-33 144.8 205 46.8
MD16G1106800 Malus domestica HOM05D004549 ORTHO05D005390 1.1e-32 144.1 187 50.8
Aqoxy3G01353 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 1.5e-32 143.7 191 50.3
Duzib268G0224 Durio zibethinus HOM05D004549 ORTHO05D005390 1.5e-32 143.7 205 46.8
QL03p055962 Quercus lobata HOM05D004549 ORTHO05D005390 1.5e-32 143.7 206 46.6
Ca_17796_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 1.9e-32 143.3 173 48.6
Cc11_g16230 Coffea canephora HOM05D004549 ORTHO05D005390 1.9e-32 143.3 202 47.0
Lalb_Chr11g0075581 Lupinus albus HOM05D004549 ORTHO05D005390 1.9e-32 143.3 203 45.8
PGSC0003DMG400007201 Solanum tuberosum HOM05D004549 ORTHO05D005390 1.9e-32 143.3 201 48.8
Oeu009692.1 Olea europaea HOM05D004549 ORTHO05D005390 2.5e-32 142.9 201 48.3
Ca_25121_v3 Cicer arietinum L. HOM05D004549 ORTHO05D005390 3.3e-32 142.5 200 45.5
AUR62005536 Chenopodium quinoa HOM05D004549 ORTHO05D005390 5.7e-32 141.7 194 49.0
SalBow8G0177 Salvia bowleyana HOM05D004549 ORTHO05D005390 7.4e-32 141.4 193 47.2
VMungo1383G1841 Vigna mungo HOM05D004549 ORTHO05D005390 7.4e-32 141.4 196 48.0
HanXRQChr17g0540101 Helianthus annuus HOM05D004549 ORTHO05D005390 9.6e-32 141.0 197 49.7
MBI11_g33737_MAGBIO Magnolia biondii HOM05D004549 ORTHO05D005390 9.6e-32 141.0 206 47.6
MD13G1106700 Malus domestica HOM05D004549 ORTHO05D005390 9.6e-32 141.0 189 51.9
RcHm_v2.0_Chr4g0432261 Rosa chinensis HOM05D004549 ORTHO05D005390 9.6e-32 141.0 201 50.2
unitig_62.g23660 Utricularia gibba HOM05D004549 ORTHO05D005390 9.6e-32 141.0 194 45.9
ATR0824G259 Amborella trichopoda HOM05D004549 ORTHO05D005390 1.3e-31 140.6 172 48.8
Lj6g0007818 Lotus japonicus HOM05D004549 ORTHO05D005390 1.3e-31 140.6 208 47.1
Medtr3g086230 Medicago truncatula HOM05D004549 ORTHO05D005390 1.3e-31 140.6 205 45.4
CDE08G0789 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 1.6e-31 140.2 191 47.1
AUR62024202 Chenopodium quinoa HOM05D004549 ORTHO05D005390 1.6e-31 140.2 196 48.5
SGA_v2.0_scaffold391G50640 Striga asiatica HOM05D002973 ORTHO05D003383 1.6e-31 140.2 205 44.9
Thecc.02G268400 Theobroma cacao HOM05D004549 ORTHO05D005390 1.6e-31 140.2 205 46.3
Ah.02g130410 Amaranthus hybridus HOM05D004549 ORTHO05D005390 2.1e-31 139.8 200 47.5
unitig_744.g24296 Utricularia gibba HOM05D004549 ORTHO05D005390 2.1e-31 139.8 189 49.2
Peaxi162Scf00128g00628 Petunia axillaris HOM05D004549 ORTHO05D005390 2.8e-31 139.4 202 48.0
CDE06G0408 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 8.2e-31 137.9 187 47.1
Sc11g0000800 Simmondsia chinensis HOM05D004549 ORTHO05D005390 8.2e-31 137.9 194 45.9
CAN.G959.23 Capsicum annuum HOM05D004549 ORTHO05D005390 1.8e-30 136.7 203 46.3
Lj6g0014292 Lotus japonicus HOM05D004549 ORTHO05D005390 1.8e-30 136.7 210 48.1
Glyma.05G172300 Glycine max HOM05D004549 ORTHO05D005390 2.4e-30 136.3 194 45.9
Aqoxy5G03620 Aquilegia oxysepala HOM05D004549 ORTHO05D005390 3.1e-30 136.0 170 50.0
EL10As2g23198 Beta vulgaris HOM05D004549 ORTHO05D005390 3.1e-30 136.0 202 48.0
Phvul.002G253700 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.1e-30 136.0 198 46.5
MSTRG.13333 Avicennia marina HOM05D004549 ORTHO05D005390 4.1e-30 135.6 197 44.7
PSO017G6717 Papaver somniferum HOM05D004549 ORTHO05D005390 4.1e-30 135.6 212 43.9
VMungo0251G3559 Vigna mungo HOM05D004549 ORTHO05D005390 4.1e-30 135.6 195 47.7
Lalb_Chr07g0185571 Lupinus albus HOM05D004549 ORTHO05D005390 6.9e-30 134.8 204 45.6
Ah.03g133600 Amaranthus hybridus HOM05D004549 ORTHO05D005390 9.0e-30 134.4 208 44.7
Nitab4.5_0008037g0010 Nicotiana tabacum HOM05D004549 ORTHO05D005390 1.2e-29 134.0 201 46.8
Oeu004470.1 Olea europaea HOM05D004549 ORTHO05D005390 1.2e-29 134.0 198 44.9
PSO478G3953 Papaver somniferum HOM05D004549 ORTHO05D005390 1.2e-29 134.0 212 43.4
Peaxi162Scf00797g00002 Petunia axillaris HOM05D004549 ORTHO05D005390 1.2e-29 134.0 201 47.3
Phvul.001G257100 Phaseolus vulgaris HOM05D004549 ORTHO05D005390 3.4e-29 132.5 196 46.9
TWI75G1071 Tripterygium wilfordii HOM05D004549 ORTHO05D005390 1.1e-27 127.5 200 43.5
Mapoly0083s0047 Marchantia polymorpha HOM05D004549 ORTHO05D005390 1.4e-27 127.1 147 50.3
Glyma.18G011800 Glycine max HOM05D004549 ORTHO05D005390 3.2e-27 125.9 192 43.8
CSS0014809 Camellia sinensis var. sinensis HOM05D004549 ORTHO05D005390 5.5e-27 125.2 171 46.2
SEGI_41357 Sequoiadendron giganteum HOM05D004549 ORTHO05D005390 1.8e-25 120.2 147 46.9
AagrBONN_evm.TU.Sc2ySwM_117.3039 Anthoceros agrestis HOM05D004985 ORTHO05D005912 2.3e-25 119.8 180 43.9
HPP92_017052 Vanilla planifolia HOM05D004549 ORTHO05D005390 2.3e-25 119.8 199 41.7
Duzib248G1249 Durio zibethinus HOM05D004549 ORTHO05D005390 2.5e-24 116.3 152 50.7
TPR.G35846 Trifolium pratense HOM05D004549 ORTHO05D005390 2.2e-23 113.2 149 50.3
Pp3c23_21280 Physcomitrium patens HOM05D004549 ORTHO05D005390 4.8e-23 112.1 145 45.5
Pp3c24_20010 Physcomitrium patens HOM05D004549 ORTHO05D005390 1.2e-21 107.5 144 43.8
Ciclev10022422m.g Citrus clementina HOM05D004549 ORTHO05D005390 2.6e-21 106.3 143 50.3
Pp3c8_24120 Physcomitrium patens HOM05D004549 ORTHO05D005390 2.6e-21 106.3 160 41.2
Zm00001eb261260 Zea mays HOM05D004549 ORTHO05D005390 5.9e-21 105.1 152 61.8
Zm00001eb173510 Zea mays HOM05D004549 ORTHO05D005390 1.3e-20 104.0 139 66.2
Os08g0119800 Oryza sativa ssp. japonica HOM05D004549 ORTHO05D005390 2.2e-20 103.2 114 51.8
SMO137G0014 Selaginella moellendorffii HOM05D004549 ORTHO05D005390 1.4e-19 100.5 145 50.3
Sc04g0001060 Simmondsia chinensis HOM05D004549 ORTHO05D005390 3.0e-17 92.8 91 56.0
CDE09G1301 Ceratophyllum demersum HOM05D004549 ORTHO05D005390 7.4e-16 88.2 196 33.2
Medtr2g046810 Medicago truncatula HOM05D004549 ORTHO05D005390 7.4e-16 88.2 141 41.8
CBR_g38912 Chara braunii HOM05D004549 ORTHO05D005390 9.7e-16 87.8 142 38.0
Nn3g16614 Nelumbo nucifera HOM05D004549 ORTHO05D005390 1.5e-13 80.5 125 46.4
RcHm_v2.0_Chr7g0191491 Rosa chinensis HOM05D004549 ORTHO05D005390 2.0e-13 80.1 100 44.0
Ah.08g218300 Amaranthus hybridus HOM05D004549 ORTHO05D005390 4.5e-13 79.0 113 42.5
AUR62001261 Chenopodium quinoa HOM05D004549 ORTHO05D005390 7.7e-13 78.2 82 52.4
Prupe.5G159900 Prunus persica HOM05D004549 ORTHO05D005390 1.1e-11 74.3 91 48.4
FAN08G1783 Fragaria x ananassa HOM05D004549 ORTHO05D005390 7.2e-11 71.6 64 57.8
FAN18G0098 Fragaria x ananassa HOM05D004549 ORTHO05D005390 1.2e-10 70.9 58 60.3
unitig_52.g17185 Utricularia gibba HOM05D004549 ORTHO05D005390 1.7e-07 60.5 65 52.3
PRCOL_00004421 Prasinoderma coloniale HOM05D004549 ORTHO05D005390 6.3e-07 58.5 116 35.3


User provided reference genes

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