Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 0.0e+00 1162.9 653 100.0
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 3.1e-303 1044.6 665 87.5
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 1.2e-288 996.1 658 84.2
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 4.0e-287 991.1 660 83.9
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 1.3e-282 976.1 662 83.5
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 1.3e-282 976.1 659 82.4
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 1.7e-282 975.7 661 83.4
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 1.7e-282 975.7 661 83.4
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 1.7e-282 975.7 661 83.4
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 4.5e-278 961.1 658 82.2
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 9.3e-276 953.4 665 81.7
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.6e-270 935.3 661 80.8
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 3.4e-270 934.9 658 78.9
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 4.5e-270 934.5 654 82.0
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.5e-254 882.9 666 74.3
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 9.1e-239 830.5 644 71.3
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 4.5e-238 828.2 550 81.5
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 2.1e-235 819.3 637 70.6
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 6.7e-234 814.3 633 70.3
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 8.8e-234 813.9 666 68.0
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 7.4e-233 810.8 673 66.7
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.3e-232 810.1 660 75.2
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 6.3e-232 807.7 631 69.6
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.6e-230 803.1 633 69.0
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.7e-229 799.7 631 69.9
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 2.2e-229 799.3 535 85.4
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 5.0e-229 798.1 633 68.9
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.1e-227 792.7 640 68.9
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.4e-226 790.0 640 68.8
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.8e-226 789.6 666 65.9
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 4.0e-226 788.5 634 67.8
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.0e-225 786.2 666 65.6
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 4.4e-225 785.0 656 67.5
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.7e-224 781.9 613 69.3
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 6.3e-224 781.2 637 67.8
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 8.2e-224 780.8 678 65.6
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 1.1e-223 780.4 629 68.0
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.4e-223 780.0 671 64.8
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 1.8e-223 779.6 657 70.0
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 7.0e-223 777.7 637 67.8
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 1.2e-222 776.9 631 67.5
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 5.9e-222 774.6 671 64.4
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 1.3e-221 773.5 630 67.1
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 3.8e-221 771.9 671 64.8
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 6.5e-221 771.2 632 67.6
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 3.2e-220 768.8 672 64.4
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 3.2e-220 768.8 671 64.4
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 1.2e-219 766.9 659 65.3
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 1.0e-218 763.8 666 62.9
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 1.8e-218 763.1 671 63.3
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 3.0e-218 762.3 627 67.3
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 3.0e-218 762.3 633 64.5
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 8.8e-218 760.8 665 65.3
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 1.2e-217 760.4 616 68.2
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 2.0e-217 759.6 636 66.4
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 2.0e-217 759.6 667 64.9
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 2.6e-217 759.2 670 64.2
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 5.7e-217 758.1 632 64.4
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 4.8e-216 755.0 635 64.6
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 1.1e-215 753.8 667 63.4
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 1.1e-215 753.8 642 66.0
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.4e-215 753.4 692 62.4
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 1.8e-215 753.1 662 64.2
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 2.4e-215 752.7 629 66.3
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 2.4e-215 752.7 663 63.7
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 4.1e-215 751.9 669 61.9
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 4.1e-215 751.9 638 64.7
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 3.5e-214 748.8 665 65.7
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 5.9e-214 748.0 662 64.0
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.3e-213 746.1 636 64.8
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 3.8e-213 745.3 659 62.1
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 3.3e-212 742.3 633 63.3
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 9.5e-212 740.7 675 64.0
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 9.5e-212 740.7 649 62.1
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 1.6e-211 740.0 633 63.0
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 2.1e-211 739.6 640 63.8
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 2.8e-211 739.2 657 61.9
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 6.1e-211 738.0 672 63.1
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 4.0e-210 735.3 628 64.8
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.6e-209 732.6 675 60.9
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 2.8e-208 729.2 639 63.7
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 2.8e-208 729.2 666 63.7
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 1.1e-207 727.2 659 63.0
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.1e-207 727.2 659 63.0
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.4e-207 726.9 659 62.8
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 3.1e-207 725.7 658 63.5
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 4.1e-207 725.3 671 59.9
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 9.2e-207 724.2 668 61.7
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 2.7e-206 722.6 632 62.3
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 2.3e-205 719.5 602 65.6
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 5.0e-205 718.4 659 60.1
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 6.6e-205 718.0 674 61.0
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 6.6e-205 718.0 663 61.1
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.9e-204 716.5 659 62.4
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.9e-204 716.5 665 61.1
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 7.3e-204 714.5 640 63.1
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 1.8e-202 709.9 674 61.0
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 1.8e-202 709.9 708 58.1
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.7e-200 703.4 752 56.5
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 1.6e-198 696.8 567 68.3
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 3.5e-198 695.7 641 65.2
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 1.6e-195 686.8 631 61.3
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 2.1e-195 686.4 633 63.0
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 1.2e-193 680.6 652 60.0
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 5.8e-193 678.3 534 69.5
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.0e-190 668.3 641 61.6
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 3.0e-189 666.0 536 64.0
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 3.3e-188 662.5 637 58.4
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 9.5e-188 661.0 510 68.2
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 4.1e-183 645.6 636 57.9
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 8.6e-181 637.9 635 57.5
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 1.9e-180 636.7 669 57.1
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 4.7e-179 632.1 648 57.7
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 4.7e-179 632.1 450 76.9
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 1.4e-175 620.5 552 63.9
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 1.2e-169 600.9 512 65.2
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.6e-166 589.0 620 56.0
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.5e-164 583.9 484 64.7
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 5.3e-162 575.5 507 62.3
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.2e-153 547.7 408 74.0
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 4.2e-143 512.7 457 64.6
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 2.1e-142 510.4 640 52.8
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 4.3e-140 502.7 449 64.6
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 1.1e-138 498.0 634 46.4
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 7.7e-137 491.9 630 44.8
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 7.7e-137 491.9 670 50.4
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 4.2e-135 486.1 522 53.1
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 7.9e-134 481.9 489 57.3
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 3.3e-132 476.5 408 66.4
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 1.0e-112 411.8 589 43.5
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 1.5e-111 407.9 344 63.1
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 7.7e-105 385.6 651 40.1
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 8.0e-102 375.6 337 65.6
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 1.0e-85 322.0 341 54.8
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 4.7e-78 296.6 208 73.6
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 2.9e-67 260.8 640 35.6
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 3.9e-64 250.4 325 49.2
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 1.5e-63 248.4 224 61.2
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.6e-62 245.0 188 68.1
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.5e-60 238.4 196 62.2
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 1.3e-54 218.8 240 54.2
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 2.8e-54 217.6 728 29.8
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.1e-53 215.7 216 58.3
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 2.0e-52 211.5 174 69.5
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.2e-50 203.8 168 62.5
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.2e-49 202.2 166 72.3
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 8.7e-48 196.1 651 29.5
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 8.4e-43 179.5 177 55.9
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 3.5e-41 174.1 177 53.7
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 2.3e-40 171.4 155 56.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 3.9e-40 170.6 155 56.8
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 6.2e-38 163.3 173 56.1
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.3e-35 155.6 127 63.8
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 2.2e-35 154.8 129 61.2
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.1e-30 138.3 136 60.3
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 3.7e-30 137.5 148 52.7
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 1.1e-26 125.9 118 78.0
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 2.5e-26 124.8 110 60.9
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 3.5e-25 120.9 189 40.2
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 3.3e-23 114.4 89 75.3
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 3.3e-23 114.4 92 63.0
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 3.3e-23 114.4 92 63.0
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 3.3e-23 114.4 92 63.0
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 1.3e-22 112.5 90 64.4
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 1.6e-22 112.1 99 62.6
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 4.8e-22 110.5 92 63.0
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.9e-21 106.7 97 59.8
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 9.0e-21 106.3 88 72.7
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 4.5e-20 104.0 92 62.0
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.2e-14 85.1 90 52.2
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.8e-14 84.7 116 47.4
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 6.3e-14 83.6 92 47.8
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 6.3e-14 83.6 86 48.8
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.9e-10 72.0 82 47.6
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.9e-10 72.0 58 56.9
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.2e-09 69.3 67 53.7
CAN.G151.20 Capsicum annuum HOM05D000329 ORTHO05D000833 9.7e-07 59.7 48 64.6
TAR625G1055 Trochodendron aralioides HOM05D003777 ORTHO05D012379 1.7e-06 58.9 45 64.4
Hma1.2p1_0214F.1_g090690 Hydrangea macrophylla HOM05D003777 ORTHO05D012379 6.3e-06 57.0 44 63.6


User provided reference genes

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