Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 0.0e+00 1153.7 600 100.0
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 4.1e-312 1074.7 600 94.7
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 5.5e-299 1030.4 603 90.0
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.7e-298 1028.1 608 89.6
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 2.9e-292 1008.1 604 88.7
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 4.7e-282 974.2 637 82.9
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 1.3e-279 966.1 548 92.3
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 9.4e-275 949.9 604 83.6
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 6.8e-273 943.7 603 83.4
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 8.8e-273 943.3 603 83.4
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 2.6e-272 941.8 603 83.3
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 6.3e-271 937.2 601 82.9
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 2.4e-262 908.7 614 80.5
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 5.1e-228 794.7 616 71.1
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 9.6e-219 763.8 615 68.5
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 1.1e-217 760.4 616 68.2
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 1.8e-217 759.6 618 66.7
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 2.4e-217 759.2 618 68.1
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 5.8e-216 754.6 616 67.9
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 7.6e-216 754.2 605 67.6
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 9.9e-216 753.8 626 65.3
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.7e-215 753.1 617 66.5
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 2.9e-215 752.3 617 67.3
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 2.4e-214 749.2 630 65.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 4.2e-214 748.4 620 66.5
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 2.7e-213 745.7 617 68.1
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 3.0e-212 742.3 627 65.9
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 3.3e-211 738.8 627 65.4
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 6.2e-210 734.6 617 65.5
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-209 733.8 620 65.2
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 6.9e-209 731.1 628 66.2
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.2e-208 730.3 626 65.3
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 4.5e-208 728.4 627 65.1
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 5.8e-208 728.0 625 65.0
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 1.1e-206 723.8 612 65.4
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 1.4e-206 723.4 637 64.1
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 7.1e-206 721.1 616 64.4
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.1e-206 721.1 614 65.3
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 9.3e-206 720.7 606 65.2
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 4.6e-205 718.4 616 64.0
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.8e-204 716.5 655 62.6
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 2.3e-204 716.1 613 65.1
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 5.1e-204 714.9 620 65.0
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 3.7e-202 708.8 658 60.5
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.8e-201 706.4 619 64.5
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 3.1e-201 705.7 611 64.8
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.5e-200 703.4 619 63.0
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 7.6e-200 701.0 617 63.9
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 1.3e-199 700.3 618 64.6
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 1.7e-199 699.9 619 63.8
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 1.7e-199 699.9 616 63.6
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.7e-199 699.9 623 63.7
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 3.8e-199 698.7 618 64.2
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 3.8e-199 698.7 628 62.1
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 1.9e-198 696.4 608 63.5
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 3.2e-198 695.7 615 63.6
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 4.2e-198 695.3 612 64.1
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.0e-196 689.1 621 64.3
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 3.9e-196 688.7 628 63.1
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 2.5e-195 686.0 620 61.9
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 4.8e-194 681.8 615 61.5
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 4.8e-194 681.8 643 61.9
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 2.4e-193 679.5 617 63.0
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 5.3e-193 678.3 620 61.6
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 9.0e-193 677.6 593 64.2
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-192 677.2 617 61.8
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 1.5e-192 676.8 617 61.1
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-191 673.7 614 61.4
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 2.9e-191 672.5 617 61.4
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 6.5e-191 671.4 601 62.1
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 5.5e-190 668.3 620 61.6
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 4.6e-189 665.2 625 61.1
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 7.9e-189 664.5 622 61.9
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 5.1e-188 661.8 618 60.4
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 6.7e-188 661.4 654 58.0
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 1.1e-187 660.6 639 60.9
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 5.7e-187 658.3 633 59.7
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.8e-186 655.2 649 58.2
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 6.3e-186 654.8 637 59.7
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 3.1e-185 652.5 609 63.9
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 1.0e-183 647.5 490 69.4
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 1.1e-182 644.0 632 59.0
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.4e-182 643.7 610 60.2
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 3.2e-182 642.5 612 59.0
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 1.2e-181 640.6 556 63.8
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 2.0e-179 633.3 569 62.6
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 3.3e-179 632.5 631 58.5
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 2.2e-178 629.8 628 58.6
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 7.7e-176 621.3 592 59.6
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 8.5e-175 617.8 561 62.4
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 6.1e-173 611.7 613 57.4
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 3.9e-172 609.0 617 58.0
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 5.2e-172 608.6 611 56.6
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 8.8e-172 607.8 623 57.3
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 1.1e-171 607.4 605 58.2
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.6e-171 606.3 620 58.2
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.7e-170 603.6 531 64.0
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 1.6e-168 597.0 616 56.0
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 2.0e-168 596.7 624 56.4
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 7.2e-166 588.2 558 60.6
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 8.0e-165 584.7 334 88.0
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.4e-163 578.9 587 57.9
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 7.0e-153 545.0 527 59.6
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 4.7e-149 532.3 557 56.0
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.1e-145 521.2 596 54.2
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 7.8e-144 515.0 339 76.4
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 2.8e-141 506.5 635 50.4
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.5e-139 500.7 399 66.9
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 9.8e-139 498.0 340 75.3
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.9e-138 496.5 517 56.1
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 4.7e-133 479.2 609 49.6
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 7.5e-131 471.9 321 75.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.9e-127 459.5 436 57.6
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.9e-118 430.6 504 53.0
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 5.6e-118 429.1 457 59.7
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 5.2e-116 422.5 516 49.6
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.3e-114 417.9 276 80.4
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.3e-114 417.9 398 61.3
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 6.6e-111 405.6 647 41.9
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 1.8e-95 354.4 378 52.9
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 2.3e-95 354.0 262 77.9
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.0e-88 329.3 320 58.4
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 6.7e-87 325.9 494 43.1
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 4.5e-83 313.2 196 82.1
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 1.2e-80 305.1 690 36.2
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.9e-79 300.1 339 56.6
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-77 295.0 365 48.5
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.7e-77 293.5 327 53.2
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 2.6e-75 287.3 230 65.7
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 6.7e-71 272.7 224 61.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 3.1e-60 237.3 273 54.6
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.1e-60 237.3 239 55.6
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 2.0e-54 218.0 251 48.6
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 2.8e-53 214.2 274 50.7
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 5.3e-52 209.9 735 28.8
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 1.2e-51 208.8 265 50.9
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 5.9e-51 206.5 301 42.2
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 2.5e-49 201.1 272 48.5
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.8e-47 194.9 106 89.6
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 2.6e-46 191.0 250 49.6
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 6.3e-45 186.4 128 75.0
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 9.1e-44 182.6 149 69.1
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 2.3e-39 167.9 257 40.5
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.6e-38 164.5 109 74.3
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 1.4e-36 158.7 267 42.3
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.6e-32 145.2 75 97.3
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 3.6e-32 144.1 75 97.3
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 2.3e-31 141.4 81 88.9
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 8.9e-31 139.4 199 42.7
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 9.8e-30 136.0 234 37.2
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 2.2e-29 134.8 169 47.9
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 2.9e-29 134.4 320 32.5
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.2e-27 129.0 126 57.1
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 5.9e-27 126.7 205 45.9
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 4.3e-25 120.6 385 29.1
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.0e-23 115.9 322 33.5
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 4.4e-22 110.5 121 50.4
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 9.8e-22 109.4 149 49.0
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 9.8e-22 109.4 154 42.9
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.7e-21 108.6 165 49.7
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 6.4e-21 106.7 135 48.9
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.1e-20 105.9 254 29.9
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.1e-20 105.9 150 49.3
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 2.4e-20 104.8 133 42.1
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 4.6e-19 100.5 143 50.3
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 1.2e-16 92.4 77 59.7
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 6.8e-15 86.7 134 48.5
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 1.9e-12 78.6 107 45.8
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 7.3e-09 66.6 62 51.6
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 1.8e-07 62.0 47 61.7
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 6.8e-07 60.1 39 79.5
CSS0008698 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 8.9e-07 59.7 83 48.2
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 2.0e-06 58.5 39 76.9
vmacro05008 Vaccinium macrocarpon HOM05D000208 ORTHO05D426771 7.6e-06 56.6 73 43.8


User provided reference genes

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