Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G16455 Arabidopsis lyrata HOM05D004873 ORTHO05D006122 0.0e+00 1420.2 906 100.0
Carub.0002s0504 Capsella rubella HOM05D004873 ORTHO05D006122 0.0e+00 1203.0 922 85.5
Sp2g04470 Schrenkiella parvula HOM05D004873 ORTHO05D006122 2.8e-307 1058.5 928 79.0
AT1G60200 Arabidopsis thaliana HOM05D004873 ORTHO05D006122 7.5e-300 1033.9 754 93.1
C01p36930 Brassica napus HOM05D004873 ORTHO05D006122 1.3e-291 1006.5 913 75.5
Thhalv10023242m.g Eutrema salsugineum HOM05D004873 ORTHO05D006122 9.2e-290 1000.3 938 76.7
BcaC06g31808 Brassica carinata HOM05D004873 ORTHO05D006122 1.3e-288 996.5 915 77.2
BolC1t03651H Brassica oleracea HOM05D004873 ORTHO05D006122 2.9e-283 978.8 923 74.2
BraA01t02979Z Brassica rapa HOM05D004873 ORTHO05D006122 2.7e-281 972.2 924 74.9
A01p29150 Brassica napus HOM05D004873 ORTHO05D006122 2.8e-278 962.2 924 74.2
BcaC09g49418 Brassica carinata HOM05D004873 ORTHO05D006122 8.1e-278 960.7 907 73.9
C04p26690 Brassica napus HOM05D004873 ORTHO05D006122 2.2e-267 926.0 920 68.9
BolC4t24137H Brassica oleracea HOM05D004873 ORTHO05D006122 2.2e-267 926.0 920 68.9
BcaC02g10690 Brassica carinata HOM05D004873 ORTHO05D006122 8.7e-264 914.1 951 66.7
CARHR052750 Cardamine hirsuta HOM05D004873 ORTHO05D006122 8.7e-264 914.1 779 80.0
BcaB04g20256 Brassica carinata HOM05D004873 ORTHO05D006122 4.9e-259 898.3 909 72.3
Aa31LG2G10110 Aethionema arabicum HOM05D004873 ORTHO05D006122 1.4e-253 880.2 962 70.0
THA.LOC104819514 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 3.0e-200 703.0 957 59.4
THA.LOC104819547 Tarenaya hassleriana HOM05D004873 ORTHO05D006122 2.3e-192 676.8 858 61.3
Duzib251G0436 Durio zibethinus HOM05D004873 ORTHO05D006122 1.2e-169 601.3 960 54.1
Atru.chr11.2013 Acer truncatum HOM05D004873 ORTHO05D006122 8.9e-168 595.1 972 50.7
C05p51270 Brassica napus HOM05D004873 ORTHO05D006122 7.5e-167 592.0 564 75.7
Ciclev10030647m.g Citrus clementina HOM05D004873 ORTHO05D006122 3.2e-165 586.6 954 54.9
TWI75G0297 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 4.1e-165 586.3 897 57.4
TWI18G0605 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 2.7e-164 583.6 955 54.6
RcHm_v2.0_Chr4g0443951 Rosa chinensis HOM05D004873 ORTHO05D006122 2.9e-158 563.5 859 53.3
Duzib248G0479 Durio zibethinus HOM05D004873 ORTHO05D006122 6.4e-158 562.4 902 52.3
TWI36G0907 Tripterygium wilfordii HOM05D004873 ORTHO05D006122 8.4e-158 562.0 865 58.0
COL.COLO4_36971 Corchorus olitorius HOM05D004873 ORTHO05D006122 5.6e-154 549.3 858 47.7
Haze_12170 Corylus avellana HOM05D004873 ORTHO05D006122 5.2e-152 542.7 928 53.1
FvH4_4g34571 Fragaria vesca HOM05D004873 ORTHO05D006122 2.0e-151 540.8 932 51.6
CiPaw.05G150500 Carya illinoinensis HOM05D004873 ORTHO05D006122 2.6e-151 540.4 896 53.7
Eucgr.B03347 Eucalyptus grandis HOM05D004873 ORTHO05D006122 4.4e-151 539.7 862 54.2
FAN22G1569 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.8e-151 539.3 940 51.8
FAN12G3868 Fragaria x ananassa HOM05D004873 ORTHO05D006122 6.4e-150 535.8 933 51.3
MELO3C012001.2 Cucumis melo HOM05D004873 ORTHO05D006122 7.1e-149 532.3 1004 50.4
GSVIVG01020233001 Vitis vinifera HOM05D004873 ORTHO05D006122 1.6e-148 531.2 830 53.1
FAN17G2310 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.1e-147 526.2 937 51.4
MBI15_g36943_MAGBIO Magnolia biondii HOM05D004873 ORTHO05D006122 8.7e-147 525.4 912 54.2
CSS0025142 Camellia sinensis var. sinensis HOM05D004873 ORTHO05D006122 4.8e-145 519.6 917 53.1
Cfa009139 Carpinus fangiana HOM05D004873 ORTHO05D006122 1.1e-144 518.5 909 52.7
Potri.010G094700 Populus trichocarpa HOM05D004873 ORTHO05D006122 2.6e-143 513.8 914 53.1
Ca_04600_v3 Cicer arietinum L. HOM05D004873 ORTHO05D006122 4.9e-142 509.6 925 48.8
Potri.008G147100 Populus trichocarpa HOM05D004873 ORTHO05D006122 8.4e-142 508.8 815 51.4
TPR.G13590 Trifolium pratense HOM05D004873 ORTHO05D006122 1.9e-141 507.7 872 51.7
Glyma.01G031400 Glycine max HOM05D004873 ORTHO05D006122 3.2e-141 506.9 945 51.3
arahy.Tifrunner.gnm1.ann1.SJZ9IC Arachis hypogaea HOM05D004873 ORTHO05D006122 2.1e-140 504.2 977 50.6
ClCG05G025280 Citrullus lanatus HOM05D004873 ORTHO05D006122 2.1e-140 504.2 797 54.5
Manes.13G031000 Manihot esculenta HOM05D004873 ORTHO05D006122 7.9e-140 502.3 791 54.4
Hma1.2p1_0160F.1_g070740 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.3e-139 500.7 928 48.6
Nn4g22808 Nelumbo nucifera HOM05D004873 ORTHO05D006122 5.1e-139 499.6 938 49.3
Sed0006362 Sechium edule HOM05D004873 ORTHO05D006122 5.1e-139 499.6 797 53.1
VMungo1215G2983 Vigna mungo HOM05D004873 ORTHO05D006122 5.1e-139 499.6 938 50.3
Dinv24864 Davidia involucrata HOM05D004873 ORTHO05D006122 6.7e-139 499.2 798 52.0
arahy.Tifrunner.gnm1.ann1.QGK7DH Arachis hypogaea HOM05D004873 ORTHO05D006122 1.9e-138 497.7 1008 49.4
Medtr5g034430 Medicago truncatula HOM05D004873 ORTHO05D006122 1.9e-138 497.7 914 49.0
QL03p061438 Quercus lobata HOM05D004873 ORTHO05D006122 5.6e-138 496.1 787 55.8
Cpa.g.sc69.19 Carica papaya HOM05D004873 ORTHO05D006122 3.1e-136 490.3 860 48.3
Sabra10G0067000 Salix brachista HOM05D004873 ORTHO05D006122 4.5e-135 486.5 994 49.0
Lalb_Chr16g0392411 Lupinus albus HOM05D004873 ORTHO05D006122 2.9e-134 483.8 773 54.7
FAN07G2437 Fragaria x ananassa HOM05D004873 ORTHO05D006122 3.8e-134 483.4 773 54.3
TAR622G0484 Trochodendron aralioides HOM05D004873 ORTHO05D006122 8.4e-134 482.3 852 52.7
CsaV3_5G031610 Cucumis sativus L. HOM05D004873 ORTHO05D006122 9.3e-133 478.8 760 54.7
Phvul.002G071900 Phaseolus vulgaris HOM05D004873 ORTHO05D006122 9.3e-133 478.8 780 54.9
Gorai.005G183000 Gossypium raimondii HOM05D004873 ORTHO05D006122 2.1e-132 477.6 796 53.0
DCAR_026543 Daucus carota HOM05D004873 ORTHO05D006122 2.7e-132 477.2 977 44.6
CANSAT01G1467 Cannabis sativa HOM05D004873 ORTHO05D006122 4.6e-132 476.5 916 48.8
TAR374G0217 Trochodendron aralioides HOM05D004873 ORTHO05D006122 6.0e-132 476.1 849 53.0
DCAR_024143 Daucus carota HOM05D004873 ORTHO05D006122 5.1e-131 473.0 945 44.9
Gohir.D02G163000 Gossypium hirsutum HOM05D004873 ORTHO05D006122 5.1e-131 473.0 795 51.9
PGSC0003DMG400030977 Solanum tuberosum HOM05D004873 ORTHO05D006122 6.7e-131 472.6 896 49.2
Sopen05g001620 Solanum pennellii HOM05D004873 ORTHO05D006122 1.9e-130 471.1 896 48.8
Prupe.1G254700 Prunus persica HOM05D004873 ORTHO05D006122 7.4e-130 469.2 779 55.6
vmacro01183 Vaccinium macrocarpon HOM05D004873 ORTHO05D006122 9.6e-130 468.8 880 50.6
Aqoxy3G02990_Aqoxy3G02991 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.3e-129 468.4 913 49.9
Psat2g106600 Pisum sativum HOM05D004873 ORTHO05D006122 2.1e-129 467.6 787 52.4
Glyma.02G034300 Glycine max HOM05D004873 ORTHO05D006122 2.8e-129 467.2 778 53.6
Oeu055452.2 Olea europaea HOM05D004873 ORTHO05D006122 3.7e-129 466.8 1023 41.5
Cc11_g14610 Coffea canephora HOM05D004873 ORTHO05D006122 4.0e-128 463.4 922 46.2
HPP92_019184 Vanilla planifolia HOM05D004873 ORTHO05D006122 1.2e-127 461.8 945 44.7
Dinv15307 Davidia involucrata HOM05D004873 ORTHO05D006122 4.5e-127 459.9 781 54.9
CAN.G376.10 Capsicum annuum HOM05D004873 ORTHO05D006122 7.6e-127 459.1 831 48.6
Hma1.2p1_0867F.1_g230230 Hydrangea macrophylla HOM05D004873 ORTHO05D006122 2.9e-126 457.2 822 50.5
SGA_v2.0_scaffold165G38251 Striga asiatica HOM05D004873 ORTHO05D006122 6.5e-126 456.1 934 43.6
Rhsim12G0047400 Rhododendron simsii HOM05D004873 ORTHO05D006122 1.9e-125 454.5 911 49.5
Actinidia01706 Actinidia chinensis HOM05D004873 ORTHO05D006122 3.2e-125 453.8 953 45.4
MD13G1091200 Malus domestica HOM05D004873 ORTHO05D006122 3.2e-125 453.8 781 51.3
MD16G1091700 Malus domestica HOM05D004873 ORTHO05D006122 9.3e-125 452.2 778 53.5
Lalb_Chr05g0228131 Lupinus albus HOM05D004873 ORTHO05D006122 2.7e-124 450.7 776 54.0
Migut.L01408 Erythranthe guttata HOM05D004873 ORTHO05D006122 7.9e-124 449.1 919 46.6
Peaxi162Scf00338g00218 Petunia axillaris HOM05D004873 ORTHO05D006122 1.3e-123 448.4 936 45.4
MSTRG.7893 Avicennia marina HOM05D004873 ORTHO05D006122 3.0e-123 447.2 757 49.4
Lsat_1_v5_gn_4_6981 Lactuca sativa HOM05D004873 ORTHO05D006122 6.7e-123 446.0 900 48.1
PGR102G2017 Punica granatum HOM05D004873 ORTHO05D006122 1.9e-122 444.5 876 48.2
AUR62005371 Chenopodium quinoa HOM05D004873 ORTHO05D006122 3.3e-122 443.7 792 47.5
Thecc.02G248000 Theobroma cacao HOM05D004873 ORTHO05D006122 2.1e-121 441.0 712 56.3
ECA199G0004 Erigeron canadensis HOM05D004873 ORTHO05D006122 1.4e-120 438.3 904 49.0
Lj6A805G39 Lonicera japonica HOM05D004873 ORTHO05D006122 2.6e-119 434.1 988 45.6
Nitab4.5_0000113g0270 Nicotiana tabacum HOM05D004873 ORTHO05D006122 2.6e-119 434.1 952 40.0
Gohir.A03G140300 Gossypium hirsutum HOM05D004873 ORTHO05D006122 1.1e-117 428.7 779 51.5
Lj2g0008447 Lotus japonicus HOM05D004873 ORTHO05D006122 1.1e-117 428.7 811 51.9
PSO063G1237 Papaver somniferum HOM05D004873 ORTHO05D006122 4.2e-117 426.8 938 50.1
HanXRQChr12g0383471 Helianthus annuus HOM05D004873 ORTHO05D006122 1.8e-115 421.4 838 49.0
Sc11g0001220 Simmondsia chinensis HOM05D004873 ORTHO05D006122 1.8e-115 421.4 765 51.8
EL10Ac6g13668 Beta vulgaris HOM05D004873 ORTHO05D006122 9.7e-114 415.6 792 53.4
ATR0691G293 Amborella trichopoda HOM05D004873 ORTHO05D006122 8.2e-113 412.5 946 46.7
PSO832G2005 Papaver somniferum HOM05D004873 ORTHO05D006122 4.1e-112 410.2 945 47.7
unitig_27.g25195 Utricularia gibba HOM05D004873 ORTHO05D006122 5.9e-111 406.4 930 43.2
HPP92_019185 Vanilla planifolia HOM05D004873 ORTHO05D006122 4.6e-108 396.7 945 42.0
AUR62014033 Chenopodium quinoa HOM05D004873 ORTHO05D006122 2.3e-107 394.4 788 47.2
Lalb_Chr05g0216921 Lupinus albus HOM05D004873 ORTHO05D006122 6.7e-107 392.9 731 44.3
Hund05991 Selenicereus undatus HOM05D004873 ORTHO05D006122 7.0e-96 356.3 864 48.1
Zm00001eb042420 Zea mays HOM05D004873 ORTHO05D006122 3.5e-95 354.0 766 43.7
SEGI_30430 Sequoiadendron giganteum HOM05D004873 ORTHO05D006122 1.8e-91 341.7 797 46.3
Mapoly0148s0032 Marchantia polymorpha HOM05D004873 ORTHO05D006122 3.6e-84 317.4 843 46.6
TAR629G1177 Trochodendron aralioides HOM05D004873 ORTHO05D006122 4.4e-82 310.5 787 38.2
Ah.03g132650 Amaranthus hybridus HOM05D004873 ORTHO05D006122 3.7e-81 307.4 979 39.7
Pp3c25_3310 Physcomitrium patens HOM05D004873 ORTHO05D006122 1.1e-80 305.8 884 41.9
Zm00001eb179020 Zea mays HOM05D004873 ORTHO05D006122 1.1e-80 305.8 762 46.3
Pp3c16_19090 Physcomitrium patens HOM05D004873 ORTHO05D006122 3.6e-76 290.8 828 42.1
Nitab4.5_0010954g0010 Nicotiana tabacum HOM05D004873 ORTHO05D006122 5.9e-71 273.5 278 56.5
Solyc05g005620.4 Solanum lycopersicum HOM05D004873 ORTHO05D006122 4.7e-68 263.8 329 54.4
Oeu056734.1 Olea europaea HOM05D004873 ORTHO05D006122 2.3e-67 261.5 834 38.0
Actinidia08168 Actinidia chinensis HOM05D004873 ORTHO05D006122 1.1e-59 236.1 722 42.8
FvH4_4g34570 Fragaria vesca HOM05D004873 ORTHO05D006122 7.5e-58 229.9 278 53.2
SMO117G0118 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.1e-51 209.5 811 36.1
FAN12G0889 Fragaria x ananassa HOM05D004873 ORTHO05D006122 5.2e-51 207.2 262 52.3
CDE01G0488 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.9e-49 201.4 238 55.9
Os08g0416400 Oryza sativa ssp. japonica HOM05D004873 ORTHO05D006122 1.1e-45 189.5 359 39.8
PSO675G2898 Papaver somniferum HOM05D004873 ORTHO05D006122 1.1e-45 189.5 399 37.1
CBR_g45271 Chara braunii HOM05D000019 ORTHO05D000002 8.9e-43 179.9 328 42.4
CDE02G2726 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 3.2e-40 171.4 251 46.2
CDE02G2297 Ceratophyllum demersum HOM05D001801 ORTHO05D001739 1.0e-38 166.4 158 58.2
CDE01G0278 Ceratophyllum demersum HOM05D004873 ORTHO05D006122 2.1e-36 158.7 391 37.3
SHI27198 Sapria himalayana HOM05D004873 ORTHO05D006122 1.1e-27 129.8 131 58.8
Aqoxy1G03520 Aquilegia oxysepala HOM05D004873 ORTHO05D006122 1.4e-24 119.4 71 81.7
Medtr5g034435 Medicago truncatula HOM05D004873 ORTHO05D006122 6.0e-23 114.0 77 76.6
Cre08.g375084 Chlamydomonas reinhardtii HOM05D004873 ORTHO05D006122 1.2e-18 99.8 190 39.5
MCO16G428 Micromonas commoda HOM05D004873 ORTHO05D006122 3.4e-18 98.2 93 46.2
Sp6g02640 Schrenkiella parvula HOM05D004873 ORTHO05D006122 1.1e-16 93.2 127 49.6
SMO119G0006 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 6.7e-14 84.0 122 43.4
PSO339G1217 Papaver somniferum HOM05D004873 ORTHO05D006122 5.6e-13 80.9 101 41.6
PSO017G6017 Papaver somniferum HOM05D004873 ORTHO05D006122 1.4e-11 76.3 137 35.8
PRCOL_00005912 Prasinoderma coloniale HOM05D004873 ORTHO05D006122 1.8e-11 75.9 84 45.2
Lsat_1_v5_gn_5_2020 Lactuca sativa HOM05D004873 ORTHO05D026408 2.6e-10 72.0 149 34.2
Lsat_1_v5_gn_6_33360 Lactuca sativa HOM05D004873 ORTHO05D026408 7.6e-10 70.5 148 33.8
Actinidia27784 Actinidia chinensis HOM05D004873 ORTHO05D026408 3.2e-08 65.1 72 47.2
SMO351G0499 Selaginella moellendorffii HOM05D004873 ORTHO05D006122 1.8e-06 59.3 118 39.0


User provided reference genes

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