Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G15400 Arabidopsis lyrata HOM05D003743 ORTHO05D004311 0.0e+00 1139.0 644 100.0
AT1G61040 Arabidopsis thaliana HOM05D003743 ORTHO05D004311 0.0e+00 1120.5 644 98.1
Carub.0002s0416 Capsella rubella HOM05D003743 ORTHO05D004311 0.0e+00 1085.5 646 94.4
CARHR052180 Cardamine hirsuta HOM05D003743 ORTHO05D004311 7.7e-307 1056.6 648 93.2
Thhalv10023338m.g Eutrema salsugineum HOM05D003743 ORTHO05D004311 8.2e-301 1036.6 647 90.4
Sp2g03480 Schrenkiella parvula HOM05D003743 ORTHO05D004311 4.7e-296 1020.8 648 88.6
BcaC06g31829 Brassica carinata HOM05D003743 ORTHO05D004311 3.6e-288 994.6 654 85.2
BcaC02g10594 Brassica carinata HOM05D003743 ORTHO05D004311 6.1e-288 993.8 652 87.1
C04p25600 Brassica napus HOM05D003743 ORTHO05D004311 6.1e-288 993.8 652 87.1
Aa31LG2G9550 Aethionema arabicum HOM05D003743 ORTHO05D004311 4.0e-287 991.1 650 84.6
C01p37700 Brassica napus HOM05D003743 ORTHO05D004311 5.7e-278 960.7 652 83.9
BcaC09g49339 Brassica carinata HOM05D003743 ORTHO05D004311 1.2e-272 943.0 648 82.7
THA.LOC104819165 Tarenaya hassleriana HOM05D003743 ORTHO05D004311 5.7e-270 934.1 654 81.3
A01p29850 Brassica napus HOM05D003743 ORTHO05D004311 3.5e-267 924.9 651 80.5
BcaB04g20309 Brassica carinata HOM05D003743 ORTHO05D004311 5.6e-265 917.5 665 80.0
BraA01t03113Z Brassica rapa HOM05D003743 ORTHO05D004311 9.2e-260 900.2 650 78.8
Cpa.g.sc27.76 Carica papaya HOM05D003743 ORTHO05D004311 1.1e-236 823.5 666 73.3
Thecc.06G191600 Theobroma cacao HOM05D003743 ORTHO05D004311 6.9e-223 777.7 661 68.2
CsaV3_4G005020 Cucumis sativus L. HOM05D003743 ORTHO05D004311 7.6e-222 774.2 663 68.2
Manes.16G024900 Manihot esculenta HOM05D003743 ORTHO05D004311 3.8e-221 771.9 661 68.8
Potri.004G039500 Populus trichocarpa HOM05D003743 ORTHO05D004311 2.1e-219 766.1 663 66.8
Prupe.3G050300 Prunus persica HOM05D003743 ORTHO05D004311 2.1e-219 766.1 658 67.0
Duzib160G0164 Durio zibethinus HOM05D003743 ORTHO05D004311 7.9e-219 764.2 664 67.5
Gohir.D10G024500 Gossypium hirsutum HOM05D003743 ORTHO05D004311 1.8e-218 763.1 668 66.9
Potri.011G047900 Populus trichocarpa HOM05D003743 ORTHO05D004311 1.9e-217 759.6 667 68.7
Duzib235G1026 Durio zibethinus HOM05D003743 ORTHO05D004311 7.4e-217 757.7 661 67.0
Gohir.A10G023800 Gossypium hirsutum HOM05D003743 ORTHO05D004311 9.6e-217 757.3 668 66.5
Gorai.011G025800 Gossypium raimondii HOM05D003743 ORTHO05D004311 9.6e-217 757.3 668 66.9
Sabra04G0024300 Salix brachista HOM05D003743 ORTHO05D004311 2.1e-216 756.1 661 67.6
Haze_06507 Corylus avellana HOM05D003743 ORTHO05D004311 1.1e-215 753.8 662 67.1
MD10G1061800 Malus domestica HOM05D003743 ORTHO05D004311 9.0e-215 750.7 659 66.9
MELO3C017564.2 Cucumis melo HOM05D003743 ORTHO05D004311 4.5e-214 748.4 663 66.4
Sed0012938 Sechium edule HOM05D003743 ORTHO05D004311 1.4e-212 743.4 655 67.2
Glyma.07G194200 Glycine max HOM05D003743 ORTHO05D004311 3.2e-212 742.3 660 66.4
Sabra11G0033300 Salix brachista HOM05D003743 ORTHO05D004311 1.2e-211 740.3 660 65.0
RcHm_v2.0_Chr5g0007801 Rosa chinensis HOM05D003743 ORTHO05D004311 1.6e-211 740.0 659 66.2
TWI23G0181 Tripterygium wilfordii HOM05D003743 ORTHO05D004311 2.7e-211 739.2 655 63.2
COL.COLO4_31510 Corchorus olitorius HOM05D003743 ORTHO05D004311 4.6e-211 738.4 663 65.5
Eucgr.E03353 Eucalyptus grandis HOM05D003743 ORTHO05D004311 1.8e-210 736.5 660 66.2
Phvul.002G226300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 1.6e-208 729.9 659 65.7
CiPaw.10G046600 Carya illinoinensis HOM05D003743 ORTHO05D004311 3.7e-208 728.8 661 65.7
FAN14G3620 Fragaria x ananassa HOM05D003743 ORTHO05D004311 3.7e-208 728.8 659 65.1
FAN16G2290 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.1e-207 727.2 659 65.1
Psat7g112160 Pisum sativum HOM05D003743 ORTHO05D004311 1.4e-207 726.9 659 64.3
Glyma.13G182500 Glycine max HOM05D003743 ORTHO05D004311 1.8e-207 726.5 660 65.5
VMungo0251G3484 Vigna mungo HOM05D003743 ORTHO05D004311 3.4e-206 722.2 661 65.1
FAN21G0113 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.2e-205 719.5 659 64.3
FvH4_3g04783 Fragaria vesca HOM05D003743 ORTHO05D004311 8.5e-205 717.6 659 64.5
Dinv07531 Davidia involucrata HOM05D003743 ORTHO05D004311 1.9e-204 716.5 661 63.4
Ca_25733_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 4.2e-204 715.3 662 64.7
Medtr4g089070 Medicago truncatula HOM05D003743 ORTHO05D004311 7.2e-204 714.5 660 63.5
PGR042G1300 Punica granatum HOM05D003743 ORTHO05D004311 1.6e-203 713.4 671 61.4
Lalb_Chr05g0218341 Lupinus albus HOM05D003743 ORTHO05D004311 2.7e-203 712.6 658 64.6
FAN03G0627 Fragaria x ananassa HOM05D003743 ORTHO05D004311 1.4e-202 710.3 657 64.1
QL05p039342 Quercus lobata HOM05D003743 ORTHO05D004311 5.7e-201 704.9 661 65.7
QL10p057179 Quercus lobata HOM05D003743 ORTHO05D004311 5.7e-201 704.9 661 65.7
TPR.G12063 Trifolium pratense HOM05D003743 ORTHO05D004311 1.7e-200 703.4 660 64.2
Ciclev10028000m.g Citrus clementina HOM05D003743 ORTHO05D004311 4.8e-200 701.8 657 64.4
Hma1.2p1_0126F.1_g059170 Hydrangea macrophylla HOM05D003743 ORTHO05D004311 6.3e-200 701.4 655 62.1
arahy.Tifrunner.gnm1.ann1.I4CLDN Arachis hypogaea HOM05D003743 ORTHO05D004311 7.7e-198 694.5 659 61.6
CSS0028072 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 1.9e-196 689.9 635 62.0
Prupe.6G309900 Prunus persica HOM05D003743 ORTHO05D004311 3.6e-195 685.6 652 60.3
Atru.chr7.2377 Acer truncatum HOM05D003743 ORTHO05D004311 1.7e-192 676.8 669 62.0
CANSAT35G0257 Cannabis sativa HOM05D003743 ORTHO05D004311 2.6e-190 669.5 673 63.6
TAR627G0572 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.6e-190 669.5 667 60.3
Lj4g0023106 Lotus japonicus HOM05D003743 ORTHO05D004311 4.5e-190 668.7 660 62.1
QL03p016879 Quercus lobata HOM05D003743 ORTHO05D004311 3.8e-189 665.6 660 60.2
RhsimUnG0044100 Rhododendron simsii HOM05D003743 ORTHO05D004311 2.1e-187 659.8 667 62.7
Lsat_1_v5_gn_2_40361 Lactuca sativa HOM05D003743 ORTHO05D004311 2.7e-187 659.4 655 62.0
Rhsim07G0025200 Rhododendron simsii HOM05D003743 ORTHO05D004311 6.7e-186 654.8 667 62.4
Aqoxy1G03805 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.3e-185 652.5 651 60.4
Glyma.03G168800 Glycine max HOM05D003743 ORTHO05D004311 2.2e-184 649.8 656 60.1
TAR629G2996 Trochodendron aralioides HOM05D003743 ORTHO05D004311 2.2e-184 649.8 665 60.6
Nitab4.5_0003668g0110 Nicotiana tabacum HOM05D003743 ORTHO05D004311 4.8e-184 648.7 660 57.1
Cc02_g12930 Coffea canephora HOM05D003743 ORTHO05D004311 8.2e-184 647.9 654 57.2
PSO210G5871 Papaver somniferum HOM05D003743 ORTHO05D004311 1.4e-183 647.1 654 62.8
PSO170G2796 Papaver somniferum HOM05D003743 ORTHO05D004311 1.8e-183 646.7 654 62.5
Oeu050830.1 Olea europaea HOM05D003743 ORTHO05D004311 2.4e-183 646.4 652 58.1
RcHm_v2.0_Chr3g0457571 Rosa chinensis HOM05D003743 ORTHO05D004311 5.3e-183 645.2 658 57.4
FvH4_6g07870 Fragaria vesca HOM05D003743 ORTHO05D004311 4.5e-182 642.1 658 57.3
Ah.09g235750 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.9e-181 639.4 655 61.4
CSS0027200 Camellia sinensis var. sinensis HOM05D003743 ORTHO05D004311 2.9e-181 639.4 654 60.2
FAN14G1138 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.5e-180 636.3 658 57.0
Glyma.19G170200 Glycine max HOM05D003743 ORTHO05D004311 6.1e-179 631.7 658 58.7
CAN.G1627.16 Capsicum annuum HOM05D003743 ORTHO05D004311 8.0e-179 631.3 660 57.7
FAN05G4405 Fragaria x ananassa HOM05D003743 ORTHO05D004311 8.0e-179 631.3 657 56.2
Peaxi162Scf00379g00092 Petunia axillaris HOM05D003743 ORTHO05D004311 1.0e-178 630.9 654 56.6
Nn1g07800 Nelumbo nucifera HOM05D003743 ORTHO05D004311 2.3e-178 629.8 670 58.4
Sc05g0007850 Simmondsia chinensis HOM05D003743 ORTHO05D004311 4.0e-178 629.0 652 60.0
Psat3g052160 Pisum sativum HOM05D003743 ORTHO05D004311 5.2e-178 628.6 648 59.6
Nitab4.5_0003347g0010 Nicotiana tabacum HOM05D003743 ORTHO05D004311 1.2e-177 627.5 660 55.6
FAN09G3903 Fragaria x ananassa HOM05D003743 ORTHO05D004311 5.7e-177 625.2 658 56.2
EL10Ac8g20336 Beta vulgaris HOM05D003743 ORTHO05D004311 9.7e-177 624.4 655 59.2
Ca_08759_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.1e-175 620.9 545 66.2
Ca_30219_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.1e-175 620.9 545 66.2
Solyc02g078580.1 Solanum lycopersicum HOM05D003743 ORTHO05D004311 2.7e-174 616.3 653 55.1
Sopen02g023440 Solanum pennellii HOM05D003743 ORTHO05D004311 3.5e-174 615.9 653 55.0
Migut.M01180 Erythranthe guttata HOM05D003743 ORTHO05D004311 1.3e-173 614.0 658 58.1
PGSC0003DMG400022434 Solanum tuberosum HOM05D003743 ORTHO05D004311 1.7e-173 613.6 660 54.5
SHI01836 Sapria himalayana HOM05D003743 ORTHO05D004311 2.9e-173 612.8 662 55.6
FAN25G1603 Fragaria x ananassa HOM05D003743 ORTHO05D004311 6.5e-173 611.7 613 60.2
Lalb_Chr16g0383591 Lupinus albus HOM05D003743 ORTHO05D004311 6.5e-173 611.7 651 58.7
Phvul.001G167200 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 8.5e-173 611.3 660 56.7
MD04G1191400 Malus domestica HOM05D003743 ORTHO05D004311 4.7e-171 605.5 650 56.5
A03p68920 Brassica napus HOM05D003743 ORTHO05D004311 1.0e-170 604.4 652 62.0
HPP92_024423 Vanilla planifolia HOM05D003743 ORTHO05D004311 2.3e-170 603.2 673 53.3
AUR62016972 Chenopodium quinoa HOM05D003743 ORTHO05D004311 5.2e-170 602.1 664 59.2
Lj8P171T25 Lonicera japonica HOM05D003743 ORTHO05D004311 2.0e-169 600.1 540 63.9
Phvul.001G224300 Phaseolus vulgaris HOM05D003743 ORTHO05D004311 4.4e-169 599.0 666 55.0
HanXRQChr10g0285841 Helianthus annuus HOM05D003743 ORTHO05D004311 5.7e-169 598.6 660 57.0
DCAR_008049 Daucus carota HOM05D003743 ORTHO05D004311 4.8e-168 595.5 661 55.7
BolC1t03734H Brassica oleracea HOM05D003743 ORTHO05D004311 8.3e-168 594.7 421 81.2
Ah.04g152550 Amaranthus hybridus HOM05D003743 ORTHO05D004311 2.4e-167 593.2 658 53.2
VMungo1383G2741 Vigna mungo HOM05D003743 ORTHO05D004311 4.1e-167 592.4 666 54.1
DCAR_004097 Daucus carota HOM05D003743 ORTHO05D004311 9.1e-167 591.3 662 55.7
MBI04_g36401_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.6e-166 590.5 656 57.0
Lj1g0019037 Lotus japonicus HOM05D003743 ORTHO05D004311 5.9e-166 588.6 671 55.6
SGA_v2.0_scaffold100G29640 Striga asiatica HOM05D003743 ORTHO05D004311 5.9e-166 588.6 650 54.6
TPR.G30857 Trifolium pratense HOM05D003743 ORTHO05D004311 2.9e-165 586.3 651 57.1
VMungo1383G3375 Vigna mungo HOM05D003743 ORTHO05D004311 1.5e-164 583.9 654 55.4
CDE02G2043 Ceratophyllum demersum HOM05D003743 ORTHO05D004311 3.3e-164 582.8 655 57.1
FAN02G2028 Fragaria x ananassa HOM05D003743 ORTHO05D004311 2.8e-163 579.7 658 53.5
unitig_748.g8020 Utricularia gibba HOM05D003743 ORTHO05D004311 1.4e-162 577.4 653 53.3
ATR0763G146 Amborella trichopoda HOM05D003743 ORTHO05D004311 8.9e-162 574.7 662 53.8
Lalb_Chr04g0260391 Lupinus albus HOM05D003743 ORTHO05D004311 5.7e-161 572.0 670 51.3
CANSAT54G1490 Cannabis sativa HOM05D003743 ORTHO05D004311 1.4e-159 567.4 650 54.2
SalBow8G3648 Salvia bowleyana HOM05D003743 ORTHO05D004311 1.4e-159 567.4 660 52.4
Medtr7g099060 Medicago truncatula HOM05D003743 ORTHO05D004311 1.6e-158 563.9 554 59.6
Ca_20186_v3 Cicer arietinum L. HOM05D003743 ORTHO05D004311 1.3e-157 560.8 682 52.8
ECA240G0220 Erigeron canadensis HOM05D003743 ORTHO05D004311 2.9e-157 559.7 668 54.5
AUR62020979 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.5e-156 557.4 654 52.4
Aqoxy3G03252 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 2.5e-156 556.6 660 52.4
MBI16_g34925_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.0e-154 551.2 655 55.7
SEGI_13209 Sequoiadendron giganteum HOM05D003743 ORTHO05D004311 1.5e-153 547.4 651 51.9
Psat7g225840 Pisum sativum HOM05D003743 ORTHO05D004311 9.8e-153 544.7 673 51.1
AUR62014784 Chenopodium quinoa HOM05D003743 ORTHO05D004311 6.4e-152 542.0 648 54.0
TPR.G34103 Trifolium pratense HOM05D003743 ORTHO05D004311 1.9e-151 540.4 680 50.1
DCAR_004099 Daucus carota HOM05D003743 ORTHO05D004311 5.4e-151 538.9 659 53.3
Glyma.03G230500 Glycine max HOM05D003743 ORTHO05D004311 7.8e-150 535.0 675 50.1
Lj1g0026238 Lotus japonicus HOM05D003743 ORTHO05D004311 1.1e-146 524.6 654 50.0
AUR62043193 Chenopodium quinoa HOM05D003743 ORTHO05D004311 1.9e-143 513.8 658 48.5
Sc06g0009130 Simmondsia chinensis HOM05D003743 ORTHO05D004311 6.0e-142 508.8 654 53.5
Medtr4g032885 Medicago truncatula HOM05D003743 ORTHO05D004311 3.0e-141 506.5 663 49.3
arahy.Tifrunner.gnm1.ann1.58ANB0 Arachis hypogaea HOM05D003743 ORTHO05D004311 1.9e-140 503.8 659 50.2
BraSC39t46172Z Brassica rapa HOM05D003743 ORTHO05D004311 1.3e-136 491.1 533 61.0
Os12g0535900 Oryza sativa ssp. japonica HOM05D003743 ORTHO05D004311 8.3e-136 488.4 610 52.8
Zm00001eb410600 Zea mays HOM05D003743 ORTHO05D004311 4.1e-135 486.1 660 49.5
MBI16_g34928_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 2.7e-134 483.4 624 54.2
Zm00001eb137720 Zea mays HOM05D003743 ORTHO05D004311 3.5e-134 483.0 655 49.2
EL10Ac8g18529 Beta vulgaris HOM05D003743 ORTHO05D004311 6.6e-133 478.8 534 53.6
Pp3c12_17420 Physcomitrium patens HOM05D003743 ORTHO05D004311 4.0e-122 443.0 621 47.2
AagrBONN_evm.TU.Sc2ySwM_368.1522 Anthoceros agrestis HOM05D003743 ORTHO05D004311 1.7e-117 427.6 662 43.5
FvH4_6g03621 Fragaria vesca HOM05D003743 ORTHO05D004311 5.1e-117 426.0 395 65.1
Glyma.13G060000 Glycine max HOM05D003743 ORTHO05D004311 6.6e-117 425.6 401 63.8
Actinidia05611 Actinidia chinensis HOM05D003743 ORTHO05D004311 4.3e-116 422.9 403 62.0
Mapoly0001s0024 Marchantia polymorpha HOM05D003743 ORTHO05D004311 7.6e-113 412.1 663 43.4
Mapoly0009s0176 Marchantia polymorpha HOM05D003743 ORTHO05D004311 1.1e-87 328.6 658 40.3
Lj1P877T22 Lonicera japonica HOM05D003743 ORTHO05D004311 1.0e-85 322.0 310 58.7
SMO118G0429 Selaginella moellendorffii HOM05D003743 ORTHO05D004311 1.7e-83 314.7 551 42.6
ECA248G2279 Erigeron canadensis HOM05D003743 ORTHO05D004311 6.3e-67 259.6 432 41.0
GSVIVG01006453001 Vitis vinifera HOM05D003743 ORTHO05D004311 2.0e-65 254.6 227 62.1
CBR_g30024 Chara braunii HOM05D003743 ORTHO05D004311 3.4e-60 237.3 641 35.6
Oeu016117.1 Olea europaea HOM05D003743 ORTHO05D004311 5.7e-60 236.5 648 34.3
Zm00001eb087640 Zea mays HOM05D003743 ORTHO05D004311 8.6e-48 196.1 268 43.3
MBI04_g35990_MAGBIO Magnolia biondii HOM05D003743 ORTHO05D004311 1.2e-36 159.1 223 56.1
Lalb_Chr20g0113451 Lupinus albus HOM05D003743 ORTHO05D004311 2.4e-34 151.4 112 64.3
Aqoxy3G03215 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 4.6e-25 120.6 106 55.7
FvH4_6g03622 Fragaria vesca HOM05D003743 ORTHO05D004311 2.5e-23 114.8 77 71.4
EL10Ac4g08952 Beta vulgaris HOM05D003743 ORTHO05D004311 4.7e-22 110.5 134 48.5
SGA_v2.0_scaffold49G18283 Striga asiatica HOM05D003743 ORTHO05D004311 1.3e-19 102.4 135 40.7
MD05G1317500 Malus domestica HOM05D003743 ORTHO05D004311 1.1e-18 99.4 125 53.6
ECA246G3327 Erigeron canadensis HOM05D001482 ORTHO05D001499 2.3e-16 91.7 81 55.6
Rhsim02G0125200 Rhododendron simsii HOM05D003743 ORTHO05D004311 1.1e-15 89.4 58 67.2
Aqoxy3G03214 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 3.3e-15 87.8 78 61.5
Aqoxy3G03213 Aquilegia oxysepala HOM05D003743 ORTHO05D004311 9.6e-15 86.3 79 53.2
Cre03.g196450 Chlamydomonas reinhardtii HOM05D003743 ORTHO05D004311 2.9e-11 74.7 589 22.4
EL10Ac5g12107 Beta vulgaris HOM05D003743 ORTHO05D004311 8.4e-11 73.2 60 60.0
PRCOL_00005809 Prasinoderma coloniale HOM05D003743 ORTHO05D004311 5.4e-10 70.5 309 25.6
Nitab4.5_0000556g0130 Nicotiana tabacum HOM05D002396 ORTHO05D002779 7.3e-07 60.1 74 56.8


User provided reference genes

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