Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL2G11920 Arabidopsis lyrata HOM05D002248 ORTHO05D006121 1.6e-28 128.6 63 100.0
AL2G11870 Arabidopsis lyrata HOM05D002248 ORTHO05D006121 2.8e-20 101.3 51 94.1
AL2G11950 Arabidopsis lyrata HOM05D002248 ORTHO05D006121 2.8e-20 101.3 51 94.1
Aa31LG5G10990 Aethionema arabicum HOM05D002248 ORTHO05D006121 1.8e-19 98.6 51 90.2
CARHR048130 Cardamine hirsuta HOM05D002248 ORTHO05D006121 2.4e-19 98.2 51 90.2
AT3G01850 Arabidopsis thaliana HOM05D002248 ORTHO05D006121 4.1e-19 97.4 51 88.2
AT1G63290 Arabidopsis thaliana HOM05D002248 ORTHO05D006121 5.3e-19 97.1 51 88.2
C09p16070 Brassica napus HOM05D002248 ORTHO05D006121 6.9e-19 96.7 51 88.2
A09p13560 Brassica napus HOM05D002248 ORTHO05D006121 9.0e-19 96.3 51 86.3
Thhalv10023677m.g Eutrema salsugineum HOM05D002248 ORTHO05D006121 1.2e-18 95.9 51 84.3
BcaB02g08607 Brassica carinata HOM05D002248 ORTHO05D006121 1.5e-18 95.5 51 86.3
Sp2g01240 Schrenkiella parvula HOM05D002248 ORTHO05D006121 2.0e-18 95.1 51 86.3
CiPaw.04G035300 Carya illinoinensis HOM05D002248 ORTHO05D006121 2.6e-18 94.7 51 80.4
QL02p071808 Quercus lobata HOM05D002248 ORTHO05D006121 4.5e-18 94.0 51 82.4
GSVIVG01001810001 Vitis vinifera HOM05D002248 ORTHO05D006121 4.5e-18 94.0 51 82.4
COL.COLO4_17170 Corchorus olitorius HOM05D002248 ORTHO05D006121 5.9e-18 93.6 51 80.4
BcaB08g35694 Brassica carinata HOM05D002248 ORTHO05D006121 7.6e-18 93.2 52 80.8
Carub.0002s0154 Capsella rubella HOM05D002248 ORTHO05D006121 7.6e-18 93.2 51 82.4
Thecc.04G033500 Theobroma cacao HOM05D002248 ORTHO05D006121 7.6e-18 93.2 51 78.4
Ah.12g062600 Amaranthus hybridus HOM05D002248 ORTHO05D006121 1.0e-17 92.8 51 80.4
Cpa.g.sc171.31 Carica papaya HOM05D002248 ORTHO05D006121 1.3e-17 92.4 51 82.4
Haze_14855 Corylus avellana HOM05D002248 ORTHO05D006121 1.3e-17 92.4 51 78.4
Prupe.3G303800 Prunus persica HOM05D002248 ORTHO05D006121 1.3e-17 92.4 51 80.4
CANSAT64G1027 Cannabis sativa HOM05D002248 ORTHO05D006121 1.7e-17 92.0 51 78.4
Hund03352 Selenicereus undatus HOM05D002248 ORTHO05D006121 1.7e-17 92.0 51 78.4
BcaC04g22707 Brassica carinata HOM05D002248 ORTHO05D006121 2.2e-17 91.7 51 84.3
Gohir.A10G159500 Gossypium hirsutum HOM05D002248 ORTHO05D006121 2.9e-17 91.3 51 78.4
MD09G1013300 Malus domestica HOM05D002248 ORTHO05D006121 2.9e-17 91.3 51 78.4
MD17G1014000 Malus domestica HOM05D002248 ORTHO05D006121 2.9e-17 91.3 51 78.4
Aqoxy3G01501 Aquilegia oxysepala HOM05D002248 ORTHO05D006121 3.8e-17 90.9 49 81.6
EL10Ac2g03081 Beta vulgaris HOM05D002248 ORTHO05D006121 3.8e-17 90.9 49 83.7
Gohir.A07G226900 Gossypium hirsutum HOM05D002248 ORTHO05D006121 3.8e-17 90.9 51 76.5
Gohir.D07G234100 Gossypium hirsutum HOM05D002248 ORTHO05D006121 3.8e-17 90.9 51 76.5
Gorai.001G269600 Gossypium raimondii HOM05D002248 ORTHO05D006121 3.8e-17 90.9 51 76.5
THA.LOC104819103 Tarenaya hassleriana HOM05D002248 ORTHO05D006121 3.8e-17 90.9 51 72.5
vmacro05946 Vaccinium macrocarpon HOM05D002248 ORTHO05D006121 3.8e-17 90.9 51 78.4
Duzib147G0482 Durio zibethinus HOM05D002248 ORTHO05D006121 5.0e-17 90.5 51 78.4
RcHm_v2.0_Chr2g0175221 Rosa chinensis HOM05D002248 ORTHO05D006121 5.0e-17 90.5 51 78.4
SalBow4G2075 Salvia bowleyana HOM05D002248 ORTHO05D006121 5.0e-17 90.5 50 80.0
Actinidia05910 Actinidia chinensis HOM05D002248 ORTHO05D006121 8.5e-17 89.7 51 78.4
Ciclev10016576m.g Citrus clementina HOM05D002248 ORTHO05D006121 8.5e-17 89.7 51 78.4
ECA232G1712 Erigeron canadensis HOM05D002248 ORTHO05D006121 8.5e-17 89.7 49 81.6
FvH4_6g53180 Fragaria vesca HOM05D002248 ORTHO05D006121 8.5e-17 89.7 51 78.4
FAN02G0458 Fragaria x ananassa HOM05D002248 ORTHO05D006121 8.5e-17 89.7 51 78.4
FAN05G5252 Fragaria x ananassa HOM05D002248 ORTHO05D006121 8.5e-17 89.7 51 78.4
FAN09G4710 Fragaria x ananassa HOM05D002248 ORTHO05D006121 8.5e-17 89.7 51 78.4
FAN14G0887 Fragaria x ananassa HOM05D002248 ORTHO05D006121 8.5e-17 89.7 51 78.4
Duzib187G0529 Durio zibethinus HOM05D002248 ORTHO05D006121 1.1e-16 89.4 51 74.5
Lju41A51T48 Lonicera japonica HOM05D002248 ORTHO05D006121 1.1e-16 89.4 51 74.5
PGR142G0429 Punica granatum HOM05D002248 ORTHO05D006121 1.1e-16 89.4 51 74.5
TAR133G0005 Trochodendron aralioides HOM05D002248 ORTHO05D006121 1.1e-16 89.4 49 79.6
MELO3C008202.2 Cucumis melo HOM05D002248 ORTHO05D006121 1.4e-16 89.0 51 76.5
Dinv25670 Davidia involucrata HOM05D002248 ORTHO05D006121 1.4e-16 89.0 51 74.5
Hma1.2p1_0049F.1_g028350 Hydrangea macrophylla HOM05D002248 ORTHO05D006121 1.4e-16 89.0 49 79.6
HPP92_003198 Vanilla planifolia HOM05D002248 ORTHO05D006121 1.4e-16 89.0 51 76.5
Atru.chr6.2534 Acer truncatum HOM05D002248 ORTHO05D006121 1.9e-16 88.6 51 76.5
arahy.Tifrunner.gnm1.ann1.BV4TL7 Arachis hypogaea HOM05D002248 ORTHO05D006121 1.9e-16 88.6 51 74.5
ClCG11G007010 Citrullus lanatus HOM05D002248 ORTHO05D006121 1.9e-16 88.6 51 74.5
CsaV3_2G034200 Cucumis sativus L. HOM05D002248 ORTHO05D006121 1.9e-16 88.6 51 74.5
Glyma.19G088400 Glycine max HOM05D002248 ORTHO05D006121 1.9e-16 88.6 51 74.5
HanXRQChr10g0294971 Helianthus annuus HOM05D002248 ORTHO05D006121 1.9e-16 88.6 51 78.4
Manes.15G159200 Manihot esculenta HOM05D002248 ORTHO05D006121 1.9e-16 88.6 49 77.6
Rhsim10G0007500 Rhododendron simsii HOM05D002248 ORTHO05D006121 1.9e-16 88.6 51 76.5
TAR629G1214 Trochodendron aralioides HOM05D002248 ORTHO05D006121 1.9e-16 88.6 49 77.6
TWI36G0847 Tripterygium wilfordii HOM05D002248 ORTHO05D006121 2.5e-16 88.2 50 76.0
Manes.17G104200 Manihot esculenta HOM05D002248 ORTHO05D006121 3.2e-16 87.8 51 70.6
Sabra16G0213500 Salix brachista HOM05D002248 ORTHO05D006121 3.2e-16 87.8 51 74.5
Sed0004149 Sechium edule HOM05D002248 ORTHO05D006121 3.2e-16 87.8 50 76.0
Gorai.011G091900 Gossypium raimondii HOM05D002248 ORTHO05D006121 4.2e-16 87.4 51 76.5
CDE02G2761 Ceratophyllum demersum HOM05D002248 ORTHO05D006121 5.5e-16 87.0 51 74.5
Cc00_g30800 Coffea canephora HOM05D002248 ORTHO05D006121 5.5e-16 87.0 49 77.6
Lsat_1_v5_gn_7_5841 Lactuca sativa HOM05D002248 ORTHO05D006121 5.5e-16 87.0 51 74.5
SGA_v2.0_scaffold15G07199 Striga asiatica HOM05D002248 ORTHO05D006121 5.5e-16 87.0 51 70.6
Zm00001eb317710 Zea mays HOM05D002248 ORTHO05D006121 5.5e-16 87.0 49 73.5
MSTRG.3084 Avicennia marina HOM05D002248 ORTHO05D006121 7.2e-16 86.7 51 70.6
CAN.G1207.6 Capsicum annuum HOM05D002248 ORTHO05D006121 7.2e-16 86.7 51 70.6
HanXRQChr09g0256131 Helianthus annuus HOM05D002248 ORTHO05D006121 7.2e-16 86.7 49 77.6
Nitab4.5_0000703g0040 Nicotiana tabacum HOM05D002248 ORTHO05D006121 7.2e-16 86.7 51 70.6
Nitab4.5_0004485g0060 Nicotiana tabacum HOM05D002248 ORTHO05D006121 7.2e-16 86.7 51 70.6
Os09g0505700 Oryza sativa ssp. japonica HOM05D002248 ORTHO05D006121 7.2e-16 86.7 52 67.3
PSO017G6202 Papaver somniferum HOM05D002248 ORTHO05D006121 7.2e-16 86.7 51 70.6
Potri.001G332700 Populus trichocarpa HOM05D002248 ORTHO05D006121 7.2e-16 86.7 51 72.5
PGSC0003DMG400023059 Solanum tuberosum HOM05D002248 ORTHO05D006121 7.2e-16 86.7 51 70.6
SGA_v2.0_scaffold44G16906 Striga asiatica HOM05D002248 ORTHO05D006121 7.2e-16 86.7 51 70.6
Lj1g0004245 Lotus japonicus HOM05D002248 ORTHO05D006121 9.3e-16 86.3 51 70.6
Medtr7g029630 Medicago truncatula HOM05D002248 ORTHO05D006121 9.3e-16 86.3 51 70.6
Solyc05g007260.3 Solanum lycopersicum HOM05D002248 ORTHO05D006121 9.3e-16 86.3 51 68.6
Sopen05g003220 Solanum pennellii HOM05D002248 ORTHO05D006121 9.3e-16 86.3 51 68.6
TPR.G38298 Trifolium pratense HOM05D002248 ORTHO05D006121 9.3e-16 86.3 51 70.6
Migut.K01454 Erythranthe guttata HOM05D002248 ORTHO05D006121 1.2e-15 85.9 50 78.0
SHI03903 Sapria himalayana HOM05D002248 ORTHO05D006121 1.2e-15 85.9 51 68.6
Eucgr.I01657 Eucalyptus grandis HOM05D002248 ORTHO05D006121 1.6e-15 85.5 51 72.5
unitig_8.g4492 Utricularia gibba HOM05D002248 ORTHO05D006121 1.6e-15 85.5 49 77.6
arahy.Tifrunner.gnm1.ann1.I7CGDJ Arachis hypogaea HOM05D002248 ORTHO05D006121 2.1e-15 85.1 51 72.5
arahy.Tifrunner.gnm1.ann1.SWM3ME Arachis hypogaea HOM05D002248 ORTHO05D006121 2.1e-15 85.1 51 72.5
Glyma.16G059000 Glycine max HOM05D002248 ORTHO05D006121 2.1e-15 85.1 51 74.5
Pp3c18_13640 Physcomitrium patens HOM05D002248 ORTHO05D006121 2.1e-15 85.1 49 77.6
Psat3g176560 Pisum sativum HOM05D002248 ORTHO05D006121 2.1e-15 85.1 51 70.6
Sc09g0003450 Simmondsia chinensis HOM05D002248 ORTHO05D006121 2.1e-15 85.1 51 74.5
PSO478G3476 Papaver somniferum HOM05D002248 ORTHO05D006121 2.7e-15 84.7 51 68.6
SEGI_35316 Sequoiadendron giganteum HOM05D002248 ORTHO05D006121 2.7e-15 84.7 59 59.3
AUR62018151 Chenopodium quinoa HOM05D002248 ORTHO05D006121 3.6e-15 84.3 59 67.8
AUR62042564 Chenopodium quinoa HOM05D002248 ORTHO05D006121 3.6e-15 84.3 59 67.8
Phvul.001G095400 Phaseolus vulgaris HOM05D002248 ORTHO05D006121 3.6e-15 84.3 50 72.0
Lalb_Chr14g0363251 Lupinus albus HOM05D002248 ORTHO05D006121 1.0e-14 82.8 51 68.6
Nn4g22362 Nelumbo nucifera HOM05D002248 ORTHO05D006121 1.0e-14 82.8 51 72.5
VMungo1383G3614 Vigna mungo HOM05D002248 ORTHO05D006121 1.3e-14 82.4 51 66.7
Oeu013646.2 Olea europaea HOM05D002248 ORTHO05D006121 2.3e-14 81.6 51 66.7
DCAR_021771 Daucus carota HOM05D002248 ORTHO05D006121 3.0e-14 81.3 49 69.4
DCAR_021774 Daucus carota HOM05D002248 ORTHO05D006121 3.0e-14 81.3 49 69.4
ATR0561G092 Amborella trichopoda HOM05D002248 ORTHO05D006121 5.1e-14 80.5 49 63.3
arahy.Tifrunner.gnm1.ann1.ZZYW0T Arachis hypogaea HOM05D002248 ORTHO05D006121 1.1e-13 79.3 64 59.4
CSS0013884 Camellia sinensis var. sinensis HOM05D002248 ORTHO05D006121 2.5e-13 78.2 62 62.9
Lalb_Chr24g0403361 Lupinus albus HOM05D002248 ORTHO05D006121 2.5e-13 78.2 51 64.7
AL2G11990 Arabidopsis lyrata HOM05D004770 ORTHO05D005572 3.3e-13 77.8 53 73.6
MBI11_g07446_MAGBIO Magnolia biondii HOM05D002248 ORTHO05D006121 3.3e-13 77.8 55 65.5
Mapoly0209s0004 Marchantia polymorpha HOM05D002248 ORTHO05D006121 7.4e-13 76.6 50 64.0
CBR_g32434 Chara braunii HOM05D002248 ORTHO05D006121 1.6e-12 75.5 51 66.7
SMO358G0518 Selaginella moellendorffii HOM05D002248 ORTHO05D006121 1.6e-12 75.5 51 60.8
Gohir.D10G084500 Gossypium hirsutum HOM05D002248 ORTHO05D006121 2.8e-12 74.7 58 63.8
PSO170G2498 Papaver somniferum HOM05D002248 ORTHO05D006121 3.7e-12 74.3 51 66.7
Medtr3g449340 Medicago truncatula HOM05D002248 ORTHO05D006121 3.4e-10 67.8 50 62.0
CARHR075080 Cardamine hirsuta HOM05D002248 ORTHO05D006121 1.3e-09 65.9 39 76.9
SalBow4G1208 Salvia bowleyana HOM05D002248 ORTHO05D006121 1.1e-08 62.8 34 76.5
Lj7A608T48 Lonicera japonica HOM05D002248 ORTHO05D006121 1.4e-08 62.4 51 60.8
Peaxi162Scf00541g00613 Petunia axillaris HOM05D002248 ORTHO05D006121 2.5e-08 61.6 36 69.4
TPR.G39334 Trifolium pratense HOM05D002248 ORTHO05D006121 1.2e-07 59.3 34 73.5


User provided reference genes

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