Interactive Phylogenetics Module

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If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL283U10030 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 2.4e-223 778.5 379 100.0
AL4G25850 Arabidopsis lyrata HOM05D005041 ORTHO05D006003 1.2e-222 776.2 379 99.7
Carub.0004s1211 Capsella rubella HOM05D005041 ORTHO05D006003 2.3e-218 761.9 379 97.1
AT2G30910 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 1.4e-215 752.7 379 96.6
BcaB01g04071 Brassica carinata HOM05D005041 ORTHO05D006003 6.3e-208 727.2 382 92.9
A03p17270 Brassica napus HOM05D005041 ORTHO05D006003 6.3e-208 727.2 382 93.2
BraA03t11001Z Brassica rapa HOM05D005041 ORTHO05D006003 1.4e-207 726.1 382 92.9
C03p20380 Brassica napus HOM05D005041 ORTHO05D006003 1.2e-206 723.0 382 92.1
BolC3t14416H Brassica oleracea HOM05D005041 ORTHO05D006003 1.2e-206 723.0 382 92.1
Sp4g13380 Schrenkiella parvula HOM05D005041 ORTHO05D006003 4.5e-206 721.1 382 92.1
BcaC02g11169 Brassica carinata HOM05D005041 ORTHO05D006003 7.7e-206 720.3 382 92.7
C04p19760 Brassica napus HOM05D005041 ORTHO05D006003 7.7e-206 720.3 382 92.7
BolC4t23509H Brassica oleracea HOM05D005041 ORTHO05D006003 7.7e-206 720.3 382 92.7
BcaB02g10347 Brassica carinata HOM05D005041 ORTHO05D006003 1.1e-204 716.5 382 92.1
A05p14760 Brassica napus HOM05D005041 ORTHO05D006003 1.9e-204 715.7 382 92.1
BraA05t20405Z Brassica rapa HOM05D005041 ORTHO05D006003 1.0e-202 709.9 383 91.1
AT2G31300 Arabidopsis thaliana HOM05D005041 ORTHO05D006003 2.4e-199 698.7 358 95.0
Aa31LG5G6010 Aethionema arabicum HOM05D005041 ORTHO05D006003 2.2e-192 675.6 412 83.0
A04p23600 Brassica napus HOM05D005041 ORTHO05D006003 3.2e-188 661.8 390 84.4
Thhalv10017625m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.8e-179 632.1 329 94.8
C04p60050 Brassica napus HOM05D005041 ORTHO05D006003 1.8e-178 629.4 368 87.0
PGR142G0148 Punica granatum HOM05D005041 ORTHO05D006003 2.3e-178 629.0 374 79.9
GSVIVG01020787001 Vitis vinifera HOM05D005041 ORTHO05D006003 2.3e-178 629.0 374 78.6
COL.COLO4_33676 Corchorus olitorius HOM05D005041 ORTHO05D006003 6.8e-178 627.5 382 78.8
Thecc.01G157600 Theobroma cacao HOM05D005041 ORTHO05D006003 2.0e-177 625.9 374 79.7
TWI63G0392 Tripterygium wilfordii HOM05D005041 ORTHO05D006003 2.0e-177 625.9 374 78.6
Eucgr.K01189 Eucalyptus grandis HOM05D005041 ORTHO05D006003 5.7e-177 624.4 377 78.8
BolC4t27508H Brassica oleracea HOM05D005041 ORTHO05D006003 1.7e-176 622.9 378 84.4
Ciclev10015615m.g Citrus clementina HOM05D005041 ORTHO05D006003 2.2e-176 622.5 377 78.0
Atru.chr6.3564 Acer truncatum HOM05D005041 ORTHO05D006003 1.8e-175 619.4 377 76.9
Nn3g21016 Nelumbo nucifera HOM05D005041 ORTHO05D006003 3.5e-174 615.1 372 78.8
Lalb_Chr20g0114161 Lupinus albus HOM05D005041 ORTHO05D006003 4.5e-174 614.8 373 77.5
Manes.02G087100 Manihot esculenta HOM05D005041 ORTHO05D006003 1.7e-173 612.8 374 77.3
Ah.01g004760 Amaranthus hybridus HOM05D005041 ORTHO05D006003 2.3e-173 612.5 374 77.3
Peaxi162Scf00828g00019 Petunia axillaris HOM05D005041 ORTHO05D006003 2.9e-173 612.1 374 77.0
MELO3C031066.2 Cucumis melo HOM05D005041 ORTHO05D006003 3.8e-173 611.7 374 76.5
Dinv26517 Davidia involucrata HOM05D005041 ORTHO05D006003 5.0e-173 611.3 373 76.4
Actinidia11183 Actinidia chinensis HOM05D005041 ORTHO05D006003 1.1e-172 610.1 374 76.5
CsaV3_6G037940 Cucumis sativus L. HOM05D005041 ORTHO05D006003 9.5e-172 607.1 376 76.6
Sed0005186 Sechium edule HOM05D005041 ORTHO05D006003 9.5e-172 607.1 371 76.8
Cc05_g09060 Coffea canephora HOM05D005041 ORTHO05D006003 1.6e-171 606.3 376 74.7
Gorai.011G123100 Gossypium raimondii HOM05D005041 ORTHO05D006003 2.1e-171 605.9 374 77.3
CSS0038733 Camellia sinensis var. sinensis HOM05D005041 ORTHO05D006003 3.6e-171 605.1 374 75.4
Gohir.D10G111500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 1.0e-170 603.6 374 77.0
Gohir.A10G154500 Gossypium hirsutum HOM05D005041 ORTHO05D006003 2.3e-170 602.4 374 76.7
THA.LOC104826236 Tarenaya hassleriana HOM05D005041 ORTHO05D006003 5.2e-170 601.3 377 79.0
EL10Ac9g21025 Beta vulgaris HOM05D005041 ORTHO05D006003 6.8e-170 600.9 374 77.0
BcaB06g28392 Brassica carinata HOM05D005041 ORTHO05D006003 2.6e-169 599.0 337 88.4
Solyc05g006470.4 Solanum lycopersicum HOM05D005041 ORTHO05D006003 5.7e-169 597.8 375 74.9
Lsat_1_v5_gn_4_52360 Lactuca sativa HOM05D005041 ORTHO05D006003 8.3e-168 594.0 378 75.1
MD09G1156800 Malus domestica HOM05D005041 ORTHO05D006003 8.3e-168 594.0 380 74.7
Hma1.2p1_0178F.1_g078240 Hydrangea macrophylla HOM05D005041 ORTHO05D006003 1.1e-167 593.6 371 75.5
ECA234G0116 Erigeron canadensis HOM05D005041 ORTHO05D006003 1.6e-166 589.7 376 72.6
PSO541G3312 Papaver somniferum HOM05D005041 ORTHO05D006003 2.7e-166 589.0 374 73.5
HanXRQChr16g0518211 Helianthus annuus HOM05D005041 ORTHO05D006003 4.6e-166 588.2 376 74.7
Nitab4.5_0004310g0020 Nicotiana tabacum HOM05D005041 ORTHO05D006003 5.9e-166 587.8 413 69.0
PSO675G8631 Papaver somniferum HOM05D005041 ORTHO05D006003 2.3e-165 585.9 374 73.3
BraA04t17886Z Brassica rapa HOM05D005041 ORTHO05D006003 3.9e-165 585.1 374 79.7
DCAR_013571 Daucus carota HOM05D005041 ORTHO05D006003 1.5e-164 583.2 372 73.4
Migut.D00514 Erythranthe guttata HOM05D005041 ORTHO05D006003 2.8e-163 578.9 380 74.2
Manes.01G129200 Manihot esculenta HOM05D005041 ORTHO05D006003 4.7e-163 578.2 374 73.0
MSTRG.15060 Avicennia marina HOM05D005041 ORTHO05D006003 8.0e-163 577.4 370 74.6
Aqoxy1G01950 Aquilegia oxysepala HOM05D005041 ORTHO05D006003 2.6e-161 572.4 373 73.2
ClCG09G022250 Citrullus lanatus HOM05D005041 ORTHO05D006003 9.8e-161 570.5 380 72.4
Sed0006581 Sechium edule HOM05D005041 ORTHO05D006003 9.8e-161 570.5 343 78.1
SGA_v2.0_scaffold1G00710 Striga asiatica HOM05D005041 ORTHO05D006003 9.8e-161 570.5 374 72.7
Os02g0817200 Oryza sativa ssp. japonica HOM05D005041 ORTHO05D006003 3.7e-160 568.5 372 71.5
MBI06_g08528_MAGBIO Magnolia biondii HOM05D005041 ORTHO05D006003 4.9e-160 568.2 382 72.0
TPR.G13543 Trifolium pratense HOM05D005041 ORTHO05D006003 7.0e-159 564.3 395 70.9
Zm00001eb258930 Zea mays HOM05D005041 ORTHO05D006003 3.5e-158 562.0 371 69.5
SGA_v2.0_scaffold8G04656 Striga asiatica HOM05D005041 ORTHO05D006003 6.6e-157 557.8 374 70.9
CDE10G0970 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 2.5e-156 555.8 369 71.3
vmacro12428 Vaccinium macrocarpon HOM05D005041 ORTHO05D006003 6.2e-155 551.2 379 71.2
Glyma.10G216300 Glycine max HOM05D005041 ORTHO05D006003 8.1e-155 550.8 335 77.9
FAN14G1924 Fragaria x ananassa HOM05D000054 ORTHO05D006003 3.7e-152 542.0 348 74.7
CiPaw.04G135200 Carya illinoinensis HOM05D005041 ORTHO05D006003 6.4e-152 541.2 372 70.4
TAR626G0242 Trochodendron aralioides HOM05D005041 ORTHO05D006003 8.3e-152 540.8 372 70.4
unitig_37.g12857 Utricularia gibba HOM05D005041 ORTHO05D006003 1.1e-151 540.4 368 69.0
Cfa022568 Carpinus fangiana HOM05D005041 ORTHO05D006003 2.4e-151 539.3 372 69.6
Dinv06276 Davidia involucrata HOM05D005041 ORTHO05D006003 7.8e-150 534.3 321 78.2
VMungo0540G2345 Vigna mungo HOM05D005041 ORTHO05D006003 5.1e-149 531.6 337 75.4
CDE10G1309 Ceratophyllum demersum HOM05D005041 ORTHO05D006003 1.1e-148 530.4 370 71.1
Haze_13460 Corylus avellana HOM05D005041 ORTHO05D006003 4.7e-147 525.0 380 67.1
FAN02G2360 Fragaria x ananassa HOM05D000054 ORTHO05D006003 2.4e-146 522.7 375 68.8
Lju124A34T49 Lonicera japonica HOM05D005041 ORTHO05D006003 3.8e-144 515.4 282 83.7
Potri.014G141700 Populus trichocarpa HOM05D005041 ORTHO05D006003 4.9e-144 515.0 378 67.2
Prupe.3G170000 Prunus persica HOM05D005041 ORTHO05D006003 4.9e-144 515.0 373 66.8
Hund00824 Selenicereus undatus HOM05D005041 ORTHO05D006003 3.2e-143 512.3 370 67.6
HPP92_025809 Vanilla planifolia HOM05D005041 ORTHO05D006003 4.1e-143 511.9 372 66.1
QL08p043305 Quercus lobata HOM05D005041 ORTHO05D006003 7.1e-143 511.1 372 67.2
FAN09G1464 Fragaria x ananassa HOM05D000054 ORTHO05D006003 1.2e-142 510.4 371 67.4
MD17G1143300 Malus domestica HOM05D005041 ORTHO05D006003 1.3e-141 506.9 371 66.6
Medtr3g049070 Medicago truncatula HOM05D005041 ORTHO05D006003 3.9e-141 505.4 377 66.6
RcHm_v2.0_Chr2g0150441 Rosa chinensis HOM05D005041 ORTHO05D006003 2.5e-140 502.7 381 65.1
Ca_14633_v3 Cicer arietinum L. HOM05D005041 ORTHO05D006003 5.6e-140 501.5 377 66.0
Lj6g0019726 Lotus japonicus HOM05D005041 ORTHO05D006003 4.7e-139 498.4 377 66.3
Nitab4.5_0002312g0010 Nicotiana tabacum HOM05D005041 ORTHO05D006003 1.4e-138 496.9 374 65.0
Glyma.18G103800 Glycine max HOM05D005041 ORTHO05D006003 1.8e-138 496.5 377 65.5
Glyma.08G311700 Glycine max HOM05D005041 ORTHO05D006003 5.2e-138 495.0 377 65.8
CANSAT11G1484 Cannabis sativa HOM05D005041 ORTHO05D006003 6.9e-138 494.6 372 64.5
SMO364G0091 Selaginella moellendorffii HOM05D005041 ORTHO05D006003 2.6e-137 492.7 377 59.7
Psat5g186840 Pisum sativum HOM05D005041 ORTHO05D006003 1.3e-136 490.3 377 65.0
Phvul.005G127400 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.9e-135 486.5 377 64.5
VMungo1080G0034 Vigna mungo HOM05D005041 ORTHO05D006003 3.2e-135 485.7 377 64.2
arahy.Tifrunner.gnm1.ann1.5LHA9P Arachis hypogaea HOM05D005041 ORTHO05D006003 9.3e-135 484.2 377 65.0
arahy.Tifrunner.gnm1.ann1.RC242R Arachis hypogaea HOM05D005041 ORTHO05D006003 9.3e-135 484.2 377 65.0
Cpa.g.sc50.61 Carica papaya HOM05D005041 ORTHO05D006003 1.7e-133 479.9 254 86.6
Lj2A374G38 Lonicera japonica HOM05D005041 ORTHO05D006003 2.3e-133 479.6 348 69.8
Sc12g0003800 Simmondsia chinensis HOM05D005041 ORTHO05D006003 4.3e-132 475.3 374 63.6
Thhalv10017010m.g Eutrema salsugineum HOM05D005041 ORTHO05D006003 2.0e-129 466.5 385 65.2
Sopen05g002420 Solanum pennellii HOM05D005041 ORTHO05D006003 1.6e-126 456.8 258 81.4
Phvul.006G036500 Phaseolus vulgaris HOM05D005041 ORTHO05D006003 1.3e-125 453.8 377 61.3
AagrBONN_evm.TU.Sc2ySwM_228.2899 Anthoceros agrestis HOM05D005041 ORTHO05D006003 1.8e-125 453.4 364 60.7
Mapoly0116s0052 Marchantia polymorpha HOM05D005041 ORTHO05D006003 2.5e-124 449.5 386 55.2
Pp3c19_12930 Physcomitrium patens HOM05D005041 ORTHO05D006003 2.9e-120 436.0 384 54.2
Zm00001eb191400 Zea mays HOM05D005041 ORTHO05D006003 6.4e-120 434.9 254 76.8
Mapoly0090s0056 Marchantia polymorpha HOM05D005041 ORTHO05D006003 1.1e-119 434.1 386 53.4
Duzib187G1062 Durio zibethinus HOM05D005041 ORTHO05D006003 2.1e-118 429.9 374 60.4
FvH4_6g37551 Fragaria vesca HOM05D005041 ORTHO05D006003 8.7e-117 424.5 282 71.3
Pp3c18_4810 Physcomitrium patens HOM05D005041 ORTHO05D006003 4.3e-116 422.2 380 54.2
AUR62031794 Chenopodium quinoa HOM05D005041 ORTHO05D006003 2.4e-106 389.8 305 64.9
ATR0787G051 Amborella trichopoda HOM05D005041 ORTHO05D006003 6.5e-104 381.7 224 78.1
AUR62024003 Chenopodium quinoa HOM05D005041 ORTHO05D006003 6.1e-94 348.6 318 56.3
CBR_g18699 Chara braunii HOM05D005041 ORTHO05D006003 1.2e-81 307.8 532 36.7
CARHR124910 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.7e-80 303.9 147 96.6
CARHR124390 Cardamine hirsuta HOM05D005041 ORTHO05D006003 5.5e-79 298.9 144 96.5
Nn6g34435 Nelumbo nucifera HOM05D005041 ORTHO05D006003 1.2e-70 271.2 215 63.3
SalBow4G0308 Salvia bowleyana HOM05D005041 ORTHO05D006003 3.6e-70 269.6 211 64.0
Sabra14G0106900 Salix brachista HOM05D005041 ORTHO05D006003 1.2e-65 254.6 218 62.8
Sopen05g002410 Solanum pennellii HOM05D005041 ORTHO05D006003 3.5e-65 253.1 272 49.6
Cfa026893 Carpinus fangiana HOM05D005041 ORTHO05D006003 1.1e-63 248.1 366 38.5
SHI23137 Sapria himalayana HOM05D005041 ORTHO05D006003 1.2e-52 211.5 135 71.1
Oeu032123.1 Olea europaea HOM05D005041 ORTHO05D006003 1.5e-52 211.1 147 70.7
Actinidia12824 Actinidia chinensis HOM05D005041 ORTHO05D006003 4.1e-50 203.0 145 69.0
Cre16.g648100 Chlamydomonas reinhardtii HOM05D005041 ORTHO05D006003 4.6e-41 172.9 286 33.6
TAR383G0169 Trochodendron aralioides HOM05D005041 ORTHO05D006003 1.0e-40 171.8 113 67.3
SEGI_31471 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 2.8e-38 163.7 139 56.8
SEGI_36522 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 7.1e-34 149.1 92 70.7
Haze_27289 Corylus avellana HOM05D005041 ORTHO05D006003 8.9e-29 132.1 282 29.8
Duzib147G0812 Durio zibethinus HOM05D005041 ORTHO05D006003 6.0e-25 119.4 146 47.3
BolC2t10705H Brassica oleracea HOM05D005041 ORTHO05D006003 1.5e-23 114.8 57 86.0
Duzib147G0224 Durio zibethinus HOM05D005041 ORTHO05D006003 6.2e-22 109.4 59 83.1
SEGI_23574 Sequoiadendron giganteum HOM05D005041 ORTHO05D006003 4.0e-21 106.7 66 72.7
CARHR285180 Cardamine hirsuta HOM05D005041 ORTHO05D006003 2.0e-20 104.4 53 90.6
Lsat_1_v5_gn_9_20280 Lactuca sativa HOM05D005041 ORTHO05D002973 8.1e-14 82.4 78 53.8
CARHR059870 Cardamine hirsuta HOM05D005041 ORTHO05D006003 1.1e-13 82.0 57 71.9
AUR62031783 Chenopodium quinoa HOM05D004756 ORTHO05D005793 4.5e-12 76.6 48 77.1
Glyma.02G162651 Glycine max HOM05D005041 ORTHO05D006003 6.2e-06 56.2 37 64.9


User provided reference genes

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