Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G64110 Arabidopsis lyrata HOM05D002696 ORTHO05D023657 2.1e-152 542.3 274 100.0
AL1G64160 Arabidopsis lyrata HOM05D002696 ORTHO05D023657 8.6e-66 254.6 145 91.0
Potri.003G108400 Populus trichocarpa HOM05D002696 ORTHO05D003940 1.1e-20 104.8 90 66.7
QL09p005648 Quercus lobata HOM05D002696 ORTHO05D003940 1.1e-20 104.8 90 66.7
C03p71600 Brassica napus HOM05D002696 ORTHO05D003940 1.4e-20 104.4 85 70.6
CANSAT56G0989 Cannabis sativa HOM05D002696 ORTHO05D003940 1.4e-20 104.4 90 66.7
COL.COLO4_14108 Corchorus olitorius HOM05D002696 ORTHO05D003940 1.4e-20 104.4 90 66.7
Duzib068G1251 Durio zibethinus HOM05D002696 ORTHO05D003940 1.4e-20 104.4 90 66.7
Gohir.A03G059100 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.4e-20 104.4 90 66.7
Gohir.D03G107000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 1.4e-20 104.4 90 66.7
Gorai.003G113400 Gossypium raimondii HOM05D002696 ORTHO05D003940 1.4e-20 104.4 90 66.7
QL09p005491 Quercus lobata HOM05D002696 ORTHO05D003940 1.4e-20 104.4 89 67.4
Thecc.03G154800 Theobroma cacao HOM05D002696 ORTHO05D003940 1.4e-20 104.4 90 66.7
Aa31LG4G16260 Aethionema arabicum HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
AL8G39240 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
AT5G62410 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
BcaB01g00921 Brassica carinata HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
BcaC01g01822 Brassica carinata HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
A06p20190 Brassica napus HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
BolC3t19451H Brassica oleracea HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
BraA06t25103Z Brassica rapa HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
Carub.0008s2309 Capsella rubella HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
CARHR276190 Cardamine hirsuta HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
Thhalv10003541m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
Thhalv10010077m.g Eutrema salsugineum HOM05D002696 ORTHO05D003940 1.9e-20 104.0 85 70.6
Cpa.g.sc3.331 Carica papaya HOM05D002696 ORTHO05D003940 2.5e-20 103.6 85 70.6
DCAR_020185 Daucus carota HOM05D002696 ORTHO05D003940 2.5e-20 103.6 91 64.8
Eucgr.A02895 Eucalyptus grandis HOM05D002696 ORTHO05D003940 2.5e-20 103.6 85 70.6
Lj3g0024722 Lotus japonicus HOM05D002696 ORTHO05D003940 2.5e-20 103.6 85 70.6
Sp5g14420 Schrenkiella parvula HOM05D002696 ORTHO05D003940 2.5e-20 103.6 85 70.6
THA.LOC104818260 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.5e-20 103.6 85 70.6
THA.LOC104821413 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 2.5e-20 103.6 85 70.6
arahy.Tifrunner.gnm1.ann1.BTDY3I Arachis hypogaea HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
arahy.Tifrunner.gnm1.ann1.P8M8R5 Arachis hypogaea HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
Ca_23897_v3 Cicer arietinum L. HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
FvH4_7g25682 Fragaria vesca HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
FAN01G1209 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
FAN03G1522 Fragaria x ananassa HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
Glyma.13G202100 Glycine max HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
Lalb_Chr03g0034121 Lupinus albus HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
MD01G1182300 Malus domestica HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
MD07G1252800 Malus domestica HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
Medtr8g037325 Medicago truncatula HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
Phvul.011G211100 Phaseolus vulgaris HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
Psat4g148760 Pisum sativum HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
Prupe.2G276400 Prunus persica HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
PGR042G0896 Punica granatum HOM05D002696 ORTHO05D003940 3.2e-20 103.2 89 66.3
RcHm_v2.0_Chr1g0374201 Rosa chinensis HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
SHI28001 Sapria himalayana HOM05D002696 ORTHO05D000023 3.2e-20 103.2 85 70.6
TPR.G1877 Trifolium pratense HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
VMungo1127G1101 Vigna mungo HOM05D002696 ORTHO05D003940 3.2e-20 103.2 87 69.0
Aqoxy2G00559 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 4.2e-20 102.8 90 64.4
BcaB02g09643 Brassica carinata HOM05D002696 ORTHO05D003940 4.2e-20 102.8 85 69.4
A06p29110 Brassica napus HOM05D002696 ORTHO05D003940 4.2e-20 102.8 85 69.4
C03p64490 Brassica napus HOM05D002696 ORTHO05D003940 4.2e-20 102.8 85 69.4
BolC3t18703H Brassica oleracea HOM05D002696 ORTHO05D003940 4.2e-20 102.8 85 69.4
BraA06t25859Z Brassica rapa HOM05D002696 ORTHO05D003940 4.2e-20 102.8 85 69.4
Cfa008155 Carpinus fangiana HOM05D002696 ORTHO05D003940 4.2e-20 102.8 85 69.4
CiPaw.04G059400 Carya illinoinensis HOM05D002696 ORTHO05D003940 4.2e-20 102.8 90 65.6
Haze_13890 Corylus avellana HOM05D002696 ORTHO05D003940 4.2e-20 102.8 85 69.4
FvH4_7g28371 Fragaria vesca HOM05D002696 ORTHO05D003940 4.2e-20 102.8 75 74.7
FAN06G3257 Fragaria x ananassa HOM05D002696 ORTHO05D003940 4.2e-20 102.8 87 69.0
Lalb_Chr01g0008031 Lupinus albus HOM05D002696 ORTHO05D003940 4.2e-20 102.8 88 69.3
Potri.001G125000 Populus trichocarpa HOM05D002696 ORTHO05D003940 4.2e-20 102.8 87 69.0
Sabra01G0096100 Salix brachista HOM05D002696 ORTHO05D003940 4.2e-20 102.8 87 69.0
Sp2g25590 Schrenkiella parvula HOM05D002696 ORTHO05D003940 4.2e-20 102.8 85 69.4
Manes.14G036500 Manihot esculenta HOM05D002696 ORTHO05D003940 5.5e-20 102.4 85 69.4
ClCG05G007340 Citrullus lanatus HOM05D002696 ORTHO05D003940 7.2e-20 102.1 87 66.7
MELO3C006807.2 Cucumis melo HOM05D002696 ORTHO05D003940 7.2e-20 102.1 87 66.7
CsaV3_3G016100 Cucumis sativus L. HOM05D002696 ORTHO05D003940 7.2e-20 102.1 87 66.7
Gohir.A07G041900 Gossypium hirsutum HOM05D002696 ORTHO05D003940 7.2e-20 102.1 75 76.0
Sed0008600 Sechium edule HOM05D002696 ORTHO05D003940 7.2e-20 102.1 87 66.7
BcaC01g02465 Brassica carinata HOM05D002696 ORTHO05D003940 9.3e-20 101.7 85 68.2
CARHR156100 Cardamine hirsuta HOM05D002696 ORTHO05D003940 9.3e-20 101.7 85 68.2
PSO339G0313 Papaver somniferum HOM05D002696 ORTHO05D003940 9.3e-20 101.7 90 63.3
PSO384G2493 Papaver somniferum HOM05D002696 ORTHO05D003940 9.3e-20 101.7 90 63.3
Ah.16g103870 Amaranthus hybridus HOM05D002696 ORTHO05D003940 1.6e-19 100.9 90 64.4
EL10Ac2g04892 Beta vulgaris HOM05D002696 ORTHO05D003940 1.6e-19 100.9 90 64.4
AUR62012301 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.6e-19 100.9 90 64.4
AUR62022940 Chenopodium quinoa HOM05D002696 ORTHO05D003940 1.6e-19 100.9 90 64.4
Ciclev10004183m.g Citrus clementina HOM05D002696 ORTHO05D003940 1.6e-19 100.9 87 67.8
Hund13894 Selenicereus undatus HOM05D002696 ORTHO05D003940 1.6e-19 100.9 90 64.4
FvH4_7g27351 Fragaria vesca HOM05D002696 ORTHO05D003940 2.1e-19 100.5 87 67.8
HanXRQChr05g0144341 Helianthus annuus HOM05D002696 ORTHO05D003940 2.1e-19 100.5 90 64.4
Carub.0005s1355 Capsella rubella HOM05D002696 ORTHO05D003940 2.7e-19 100.1 85 68.2
Glyma.12G236600 Glycine max HOM05D002696 ORTHO05D003940 2.7e-19 100.1 87 67.8
SEGI_28050 Sequoiadendron giganteum HOM05D002696 ORTHO05D003940 2.7e-19 100.1 89 66.3
AT3G47460 Arabidopsis thaliana HOM05D002696 ORTHO05D003940 3.6e-19 99.8 85 68.2
Gohir.D07G046000 Gossypium hirsutum HOM05D002696 ORTHO05D003940 3.6e-19 99.8 90 64.4
Gorai.001G049100 Gossypium raimondii HOM05D002696 ORTHO05D003940 3.6e-19 99.8 90 64.4
PSO423G0248 Papaver somniferum HOM05D002696 ORTHO05D003940 3.6e-19 99.8 90 62.2
Peaxi162Scf00241g00034 Petunia axillaris HOM05D002696 ORTHO05D003940 3.6e-19 99.8 93 62.4
SGA_v2.0_scaffold44G16551 Striga asiatica HOM05D002696 ORTHO05D003940 3.6e-19 99.8 100 63.0
THA.LOC104821415 Tarenaya hassleriana HOM05D002696 ORTHO05D003940 3.6e-19 99.8 82 70.7
ATR0618G100 Amborella trichopoda HOM05D002696 ORTHO05D003940 4.6e-19 99.4 85 68.2
MSTRG.8828 Avicennia marina HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
CAN.G48.39 Capsicum annuum HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
Cc06_g23360 Coffea canephora HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
Dinv06563 Davidia involucrata HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
Migut.F00482 Erythranthe guttata HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
Lj1A979T80 Lonicera japonica HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
Nn4g25061 Nelumbo nucifera HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
Sc10g0002620 Simmondsia chinensis HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
TAR633G0051 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
TAR633G1694 Trochodendron aralioides HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
vmacro06809 Vaccinium macrocarpon HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
GSVIVG01018715001 Vitis vinifera HOM05D002696 ORTHO05D003940 4.6e-19 99.4 87 66.7
CSS0019414 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 6.1e-19 99.0 87 66.7
CSS0021515 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 6.1e-19 99.0 87 66.7
Nitab4.5_0002816g0060 Nicotiana tabacum HOM05D002696 ORTHO05D003940 6.1e-19 99.0 86 67.4
Nitab4.5_0003490g0070 Nicotiana tabacum HOM05D002696 ORTHO05D003940 6.1e-19 99.0 86 67.4
Oeu022477.1 Olea europaea HOM05D002696 ORTHO05D003940 6.1e-19 99.0 86 67.4
Rhsim03G0166400 Rhododendron simsii HOM05D002696 ORTHO05D003940 6.1e-19 99.0 87 65.5
SGA_v2.0_scaffold2G01216 Striga asiatica HOM05D002696 ORTHO05D003940 6.1e-19 99.0 86 67.4
HPP92_013639 Vanilla planifolia HOM05D002696 ORTHO05D003940 6.1e-19 99.0 112 58.9
CSS0022672 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 7.9e-19 98.6 97 58.8
FvH4_7g27644 Fragaria vesca HOM05D002696 ORTHO05D003940 7.9e-19 98.6 96 60.4
FAN06G4118 Fragaria x ananassa HOM05D002696 ORTHO05D003940 7.9e-19 98.6 74 73.0
FAN10G0424 Fragaria x ananassa HOM05D002696 ORTHO05D003940 7.9e-19 98.6 74 73.0
HanXRQChr08g0223041 Helianthus annuus HOM05D002696 ORTHO05D003940 7.9e-19 98.6 85 67.1
Lsat_1_v5_gn_8_8781 Lactuca sativa HOM05D002696 ORTHO05D003940 7.9e-19 98.6 85 67.1
Solyc03g093250.2 Solanum lycopersicum HOM05D002696 ORTHO05D003940 1.0e-18 98.2 87 65.5
Sopen03g024050 Solanum pennellii HOM05D002696 ORTHO05D003940 1.0e-18 98.2 87 65.5
AagrBONN_evm.TU.Sc2ySwM_344.3408 Anthoceros agrestis HOM05D002696 ORTHO05D003940 1.4e-18 97.8 87 65.5
SalBow8G1580 Salvia bowleyana HOM05D002696 ORTHO05D003940 1.8e-18 97.4 87 65.5
MBI15_g05590_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 2.3e-18 97.1 87 65.5
Os01g0904400 Oryza sativa ssp. japonica HOM05D002696 ORTHO05D003940 2.3e-18 97.1 87 64.4
Atru.chr1.739 Acer truncatum HOM05D002696 ORTHO05D003940 3.0e-18 96.7 87 64.4
ECA234G3187 Erigeron canadensis HOM05D002696 ORTHO05D003940 3.0e-18 96.7 85 64.7
Mapoly0005s0174 Marchantia polymorpha HOM05D002696 ORTHO05D003940 3.0e-18 96.7 87 63.2
Zm00001eb144310 Zea mays HOM05D002696 ORTHO05D003940 3.0e-18 96.7 87 64.4
SMO076G0001 Selaginella moellendorffii HOM05D002696 ORTHO05D003940 5.1e-18 95.9 76 71.1
AL5G26680 Arabidopsis lyrata HOM05D002696 ORTHO05D003940 8.8e-18 95.1 85 65.9
MCO13G593 Micromonas commoda HOM05D002696 ORTHO05D003940 1.1e-17 94.7 100 58.0
Pp3c13_8840 Physcomitrium patens HOM05D002696 ORTHO05D003940 1.9e-17 94.0 85 65.9
CDE12G0096 Ceratophyllum demersum HOM05D002696 ORTHO05D003940 7.4e-17 92.0 87 62.1
FAN06G0316 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.8e-15 87.4 119 50.4
CSS0036675 Camellia sinensis var. sinensis HOM05D002696 ORTHO05D003940 1.3e-13 81.3 59 74.6
FAN06G1128 Fragaria x ananassa HOM05D002696 ORTHO05D003940 1.3e-13 81.3 80 57.5
Cre02.g086650 Chlamydomonas reinhardtii HOM05D002696 ORTHO05D003940 2.2e-13 80.5 85 60.0
HPP92_013637 Vanilla planifolia HOM05D002696 ORTHO05D003940 5.0e-13 79.3 56 75.0
PRCOL_00001774 Prasinoderma coloniale HOM05D002696 ORTHO05D003940 8.5e-13 78.6 58 69.0
Cfa024848 Carpinus fangiana HOM05D002696 ORTHO05D003940 2.5e-12 77.0 126 44.4
BcaB03g16548 Brassica carinata HOM05D040707 ORTHO05D023657 3.6e-11 73.2 77 62.3
FAN06G1881 Fragaria x ananassa HOM05D002696 ORTHO05D003940 6.1e-11 72.4 114 44.7
Aqoxy7G02846 Aquilegia oxysepala HOM05D002696 ORTHO05D003940 3.9e-10 69.7 78 52.6
FAN06G4003 Fragaria x ananassa HOM05D002696 ORTHO05D003940 5.7e-09 65.9 90 48.9
MBI08_g12687_MAGBIO Magnolia biondii HOM05D002696 ORTHO05D003940 4.1e-07 59.7 59 57.6


User provided reference genes

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