Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G59330 Arabidopsis lyrata HOM05D000629 ORTHO05D080214 1.6e-140 503.1 317 100.0
Medtr5g036670 Medicago truncatula HOM05D000629 ORTHO05D000576 2.8e-07 60.5 55 47.3
MSTRG.23972 Avicennia marina HOM05D000629 ORTHO05D000576 3.6e-07 60.1 55 47.3
Psat2g114360 Pisum sativum HOM05D000629 ORTHO05D000576 3.6e-07 60.1 55 47.3
Sabra16G0229600 Salix brachista HOM05D000629 ORTHO05D000576 3.6e-07 60.1 93 34.4
CSS0016092 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000576 4.7e-07 59.7 81 34.6
Oeu062378.1 Olea europaea HOM05D000629 ORTHO05D000576 4.7e-07 59.7 55 45.5
ClCG05G024900 Citrullus lanatus HOM05D000629 ORTHO05D000576 6.2e-07 59.3 86 36.0
Dinv33684 Davidia involucrata HOM05D000629 ORTHO05D000576 6.2e-07 59.3 81 34.6
Duzib264G1131 Durio zibethinus HOM05D000629 ORTHO05D000576 6.2e-07 59.3 55 45.5
Gohir.A11G068400 Gossypium hirsutum HOM05D000629 ORTHO05D000576 6.2e-07 59.3 55 45.5
Gohir.D09G023200 Gossypium hirsutum HOM05D000629 ORTHO05D000576 6.2e-07 59.3 55 45.5
Gohir.D11G072600 Gossypium hirsutum HOM05D000629 ORTHO05D000576 6.2e-07 59.3 55 45.5
Gorai.006G027300 Gossypium raimondii HOM05D000629 ORTHO05D000576 6.2e-07 59.3 55 45.5
Gorai.007G077800 Gossypium raimondii HOM05D000629 ORTHO05D000576 6.2e-07 59.3 55 45.5
Oeu060596.1 Olea europaea HOM05D000629 ORTHO05D000576 6.2e-07 59.3 55 45.5
Sed0005931 Sechium edule HOM05D000629 ORTHO05D000576 6.2e-07 59.3 86 36.0
Cc07_g02780 Coffea canephora HOM05D000629 ORTHO05D000576 8.0e-07 58.9 55 45.5
Gohir.A09G024000 Gossypium hirsutum HOM05D000629 ORTHO05D000576 8.0e-07 58.9 55 45.5
Lju41A28G115 Lonicera japonica HOM05D000629 ORTHO05D000576 8.0e-07 58.9 81 34.6
Thecc.04G065500 Theobroma cacao HOM05D000629 ORTHO05D000576 8.0e-07 58.9 55 45.5
TPR.G17336 Trifolium pratense HOM05D000629 ORTHO05D000576 8.0e-07 58.9 55 45.5
unitig_21.g20510 Utricularia gibba HOM05D000629 ORTHO05D000576 8.0e-07 58.9 55 45.5
unitig_744.g24345 Utricularia gibba HOM05D000629 ORTHO05D000576 8.0e-07 58.9 55 45.5
CARHR063160 Cardamine hirsuta HOM05D000629 ORTHO05D000576 1.1e-06 58.5 55 45.5
Gohir.A12G057900 Gossypium hirsutum HOM05D000629 ORTHO05D000576 1.1e-06 58.5 55 45.5
ECA238G1737 Erigeron canadensis HOM05D000629 ORTHO05D000576 1.4e-06 58.2 55 43.6
Gohir.D04G052000 Gossypium hirsutum HOM05D000629 ORTHO05D000576 1.4e-06 58.2 55 47.3
Lsat_1_v5_gn_4_7801 Lactuca sativa HOM05D000629 ORTHO05D000576 1.4e-06 58.2 57 47.4
Oeu018662.3 Olea europaea HOM05D000629 ORTHO05D000576 1.4e-06 58.2 81 35.8
Peaxi162Scf00059g00016 Petunia axillaris HOM05D000629 ORTHO05D000576 1.4e-06 58.2 55 43.6
SalBow1G7286 Salvia bowleyana HOM05D000629 ORTHO05D000576 1.4e-06 58.2 81 35.8
vmacro18221 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 1.4e-06 58.2 55 43.6
A09p17860 Brassica napus HOM05D000629 ORTHO05D000576 1.8e-06 57.8 147 29.9
CSS0005583 Camellia sinensis var. sinensis HOM05D000629 ORTHO05D000084 1.8e-06 57.8 55 41.8
CARHR024580 Cardamine hirsuta HOM05D000629 ORTHO05D000576 1.8e-06 57.8 63 42.9
MELO3C012036.2 Cucumis melo HOM05D000629 ORTHO05D000576 1.8e-06 57.8 63 42.9
CsaV3_5G032000 Cucumis sativus L. HOM05D000629 ORTHO05D000576 1.8e-06 57.8 63 42.9
Dinv35005 Davidia involucrata HOM05D000629 ORTHO05D000576 1.8e-06 57.8 55 41.8
Gorai.012G058200 Gossypium raimondii HOM05D000629 ORTHO05D000576 1.8e-06 57.8 55 45.5
MD09G1041300 Malus domestica HOM05D000629 ORTHO05D000576 1.8e-06 57.8 55 43.6
SHI21001 Sapria himalayana HOM05D000629 ORTHO05D000576 1.8e-06 57.8 55 45.5
Hund16094 Selenicereus undatus HOM05D000629 ORTHO05D000576 1.8e-06 57.8 57 42.1
Atru.chr8.2428 Acer truncatum HOM05D000629 ORTHO05D000576 2.3e-06 57.4 95 32.6
CAN.G206.73 Capsicum annuum HOM05D000629 ORTHO05D000576 2.3e-06 57.4 55 41.8
Eucgr.I01884 Eucalyptus grandis HOM05D000629 ORTHO05D000576 2.3e-06 57.4 55 43.6
Glyma.01G038300 Glycine max HOM05D000629 ORTHO05D000576 2.3e-06 57.4 55 45.5
Glyma.02G026700 Glycine max HOM05D000629 ORTHO05D000576 2.3e-06 57.4 55 45.5
Sc11g0008010 Simmondsia chinensis HOM05D000629 ORTHO05D000576 2.3e-06 57.4 55 41.8
THA.LOC104819649 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 2.3e-06 57.4 55 43.6
TWI18G0523 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 2.3e-06 57.4 55 45.5
Zm00001eb135790 Zea mays HOM05D000629 ORTHO05D000576 2.3e-06 57.4 81 34.6
AT1G24190 Arabidopsis thaliana HOM05D000629 ORTHO05D000576 3.1e-06 57.0 81 37.0
Ca_04640_v3 Cicer arietinum L. HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 45.5
DCAR_011183 Daucus carota HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 43.6
Lalb_Chr21g0319171 Lupinus albus HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 45.5
Oeu031505.3 Olea europaea HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 43.6
PSO832G3953 Papaver somniferum HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 45.5
Psat4g067640 Pisum sativum HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 45.5
QL02p079008 Quercus lobata HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 41.8
Sabra08G0145700 Salix brachista HOM05D000629 ORTHO05D000576 3.1e-06 57.0 81 34.6
THA.LOC104805422 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 45.5
TPR.G29738 Trifolium pratense HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 45.5
TWI75G0044 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 45.5
vmacro05781 Vaccinium macrocarpon HOM05D000629 ORTHO05D000576 3.1e-06 57.0 55 41.8
CAN.G1128.14 Capsicum annuum HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 43.6
CDE04G1724 Ceratophyllum demersum HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 45.5
CDE06G1214 Ceratophyllum demersum HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 45.5
CBR_g20366 Chara braunii HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 41.8
Ca_26197_v3 Cicer arietinum L. HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 45.5
FAN05G2798 Fragaria x ananassa HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 41.8
FAN09G1195 Fragaria x ananassa HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 41.8
FAN14G4427 Fragaria x ananassa HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 41.8
Lj2g0021309 Lotus japonicus HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 43.6
Potri.001G350200 Populus trichocarpa HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 45.5
RhsimUnG0169000 Rhododendron simsii HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 41.8
Sed0017791 Sechium edule HOM05D000629 ORTHO05D000576 4.0e-06 56.6 63 41.3
SGA_v2.0_scaffold224G42970 Striga asiatica HOM05D000629 ORTHO05D000576 4.0e-06 56.6 62 40.3
THA.LOC104823669 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 45.5
TWI12G1163 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 41.8
unitig_22.g6485 Utricularia gibba HOM05D000629 ORTHO05D000576 4.0e-06 56.6 55 45.5
arahy.Tifrunner.gnm1.ann1.38NBAQ Arachis hypogaea HOM05D000629 ORTHO05D000576 5.2e-06 56.2 93 33.3
arahy.Tifrunner.gnm1.ann1.TFL5QC Arachis hypogaea HOM05D000629 ORTHO05D000576 5.2e-06 56.2 93 33.3
BcaB03g15529 Brassica carinata HOM05D000629 ORTHO05D000576 5.2e-06 56.2 63 44.4
BcaB04g20237 Brassica carinata HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 41.8
BcaC02g10673 Brassica carinata HOM05D000629 ORTHO05D000576 5.2e-06 56.2 63 39.7
BcaC06g31799 Brassica carinata HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 43.6
BcaC09g49452 Brassica carinata HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 41.8
A01p28910 Brassica napus HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 41.8
C01p36580 Brassica napus HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 41.8
C05p51410 Brassica napus HOM05D000629 ORTHO05D000576 5.2e-06 56.2 63 39.7
BolC1t03619H Brassica oleracea HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 41.8
BraA01t03017Z Brassica rapa HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 41.8
ECA232G2758 Erigeron canadensis HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 41.8
Glyma.13G067800 Glycine max HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 43.6
Glyma.19G016300 Glycine max HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 43.6
HanXRQChr17g0570321 Helianthus annuus HOM05D000629 ORTHO05D000576 5.2e-06 56.2 185 28.6
Nitab4.5_0001727g0110 Nicotiana tabacum HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 43.6
Nitab4.5_0003431g0040 Nicotiana tabacum HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 45.5
PSO161G0028 Papaver somniferum HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 43.6
PSO478G4498 Papaver somniferum HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 43.6
Phvul.004G022900 Phaseolus vulgaris HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 43.6
Potri.010G038700 Populus trichocarpa HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 45.5
RcHm_v2.0_Chr2g0169931 Rosa chinensis HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 41.8
THA.LOC104808829 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 5.2e-06 56.2 63 42.9
THA.LOC104822068 Tarenaya hassleriana HOM05D000629 ORTHO05D000576 5.2e-06 56.2 81 35.8
VMungo0464G1995 Vigna mungo HOM05D000629 ORTHO05D000576 5.2e-06 56.2 55 43.6
AL1G38020 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 6.8e-06 55.8 81 35.8
MSTRG.3203 Avicennia marina HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 43.6
A07p31240 Brassica napus HOM05D000629 ORTHO05D000576 6.8e-06 55.8 63 44.4
BraA07t30756Z Brassica rapa HOM05D000629 ORTHO05D000576 6.8e-06 55.8 63 44.4
Ciclev10030507m.g Citrus clementina HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 43.6
FvH4_6g49790 Fragaria vesca HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 41.8
Glyma.08G292900 Glycine max HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 43.6
Glyma.18G130400 Glycine max HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 43.6
MD17G1042600 Malus domestica HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 41.8
PSO591G0034 Papaver somniferum HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 43.6
Sopen05g002490 Solanum pennellii HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 43.6
SGA_v2.0_scaffold205G41733 Striga asiatica HOM05D000629 ORTHO05D000576 6.8e-06 55.8 55 41.8
Aa31LG2G10330 Aethionema arabicum HOM05D000629 ORTHO05D000576 8.9e-06 55.5 146 28.8
AL2G29300 Arabidopsis lyrata HOM05D000629 ORTHO05D000576 8.9e-06 55.5 63 42.9
BcaC08g45844 Brassica carinata HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 45.5
A03p66060 Brassica napus HOM05D000629 ORTHO05D000576 8.9e-06 55.5 87 32.2
C06p36350 Brassica napus HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 45.5
BolC4t24149H Brassica oleracea HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 40.0
BolC6t38755H Brassica oleracea HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 45.5
Carub.0002s1673 Capsella rubella HOM05D000629 ORTHO05D000576 8.9e-06 55.5 63 42.9
CARHR010590 Cardamine hirsuta HOM05D000629 ORTHO05D000576 8.9e-06 55.5 76 35.5
FvH4_5g22630 Fragaria vesca HOM05D000629 ORTHO05D014635 8.9e-06 55.5 87 32.2
FAN04G3120 Fragaria x ananassa HOM05D000629 ORTHO05D000576 8.9e-06 55.5 87 32.2
FAN18G1989 Fragaria x ananassa HOM05D000629 ORTHO05D014635 8.9e-06 55.5 87 32.2
FAN18G3419 Fragaria x ananassa HOM05D000629 ORTHO05D014635 8.9e-06 55.5 87 32.2
HanXRQChr09g0265741 Helianthus annuus HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 41.8
HanXRQChr15g0474281 Helianthus annuus HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 41.8
Hma1.2p1_0289F.1_g114550 Hydrangea macrophylla HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 41.8
Os01g0109700 Oryza sativa ssp. japonica HOM05D000629 ORTHO05D000576 8.9e-06 55.5 92 32.6
Potri.008G192200 Populus trichocarpa HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 41.8
SGA_v2.0_scaffold135G34805 Striga asiatica HOM05D000629 ORTHO05D000084 8.9e-06 55.5 55 43.6
TWI56G0743 Tripterygium wilfordii HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 40.0
TAR371G0714 Trochodendron aralioides HOM05D000629 ORTHO05D000576 8.9e-06 55.5 55 41.8
Zm00001eb135770 Zea mays HOM05D000629 ORTHO05D000576 8.9e-06 55.5 81 33.3
Zm00001eb334400 Zea mays HOM05D000629 ORTHO05D000576 8.9e-06 55.5 92 31.5


User provided reference genes

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