Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G47790 Arabidopsis lyrata HOM05D001082 ORTHO05D005120 0.0e+00 2996.8 1503 100.0
AT1G33410 Arabidopsis thaliana HOM05D001082 ORTHO05D005120 0.0e+00 2847.8 1509 94.9
CARHR032850 Cardamine hirsuta HOM05D001082 ORTHO05D005120 0.0e+00 2707.6 1503 90.1
Sp1g28860 Schrenkiella parvula HOM05D001082 ORTHO05D005120 0.0e+00 2661.3 1504 88.6
Thhalv10006552m.g Eutrema salsugineum HOM05D001082 ORTHO05D005120 0.0e+00 2578.5 1512 86.4
BcaB03g13701 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 2561.6 1506 85.6
BraA05t21326Z Brassica rapa HOM05D001082 ORTHO05D005120 0.0e+00 2552.7 1514 85.3
A05p24320 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 2548.9 1541 84.0
BcaC05g27806 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 2546.9 1511 85.0
BolC5t32536H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 2535.4 1512 84.9
C05p38080 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 2521.9 1544 83.2
Carub.0001s3160 Capsella rubella HOM05D001082 ORTHO05D005120 0.0e+00 2379.4 1281 93.0
Aa31LG6G7920 Aethionema arabicum HOM05D001082 ORTHO05D005120 0.0e+00 2346.6 1509 78.9
THA.LOC104806485 Tarenaya hassleriana HOM05D001082 ORTHO05D005120 0.0e+00 2204.5 1505 75.0
GSVIVG01015912001 Vitis vinifera HOM05D001082 ORTHO05D005120 0.0e+00 1562.0 1514 54.8
Cfa008545 Carpinus fangiana HOM05D001082 ORTHO05D005120 0.0e+00 1533.1 1513 54.3
Thecc.06G064200 Theobroma cacao HOM05D001082 ORTHO05D005120 0.0e+00 1530.8 1513 54.7
Manes.15G096100 Manihot esculenta HOM05D001082 ORTHO05D005120 0.0e+00 1523.8 1516 54.5
Potri.001G078600 Populus trichocarpa HOM05D001082 ORTHO05D005120 0.0e+00 1522.7 1514 54.4
CiPaw.02G126600 Carya illinoinensis HOM05D001082 ORTHO05D005120 0.0e+00 1520.8 1520 53.4
COL.COLO4_31206 Corchorus olitorius HOM05D001082 ORTHO05D005120 0.0e+00 1516.5 1515 53.8
Ciclev10000026m.g Citrus clementina HOM05D001082 ORTHO05D005120 0.0e+00 1512.3 1514 53.8
Dinv24538 Davidia involucrata HOM05D001082 ORTHO05D005120 0.0e+00 1496.9 1516 52.9
TWI14G0841 Tripterygium wilfordii HOM05D001082 ORTHO05D005120 0.0e+00 1481.8 1520 53.3
vmacro01638 Vaccinium macrocarpon HOM05D001082 ORTHO05D005120 0.0e+00 1462.6 1539 51.1
Gorai.007G307100 Gossypium raimondii HOM05D001082 ORTHO05D005120 0.0e+00 1459.9 1512 52.6
TAR629G2955 Trochodendron aralioides HOM05D001082 ORTHO05D005120 0.0e+00 1459.1 1513 52.4
Actinidia11712 Actinidia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1457.6 1467 52.8
QL10p065261 Quercus lobata HOM05D001082 ORTHO05D005120 0.0e+00 1451.8 1554 52.1
PSO782G2901 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1446.8 1517 51.2
CSS0006928 Camellia sinensis var. sinensis HOM05D001082 ORTHO05D005120 0.0e+00 1446.0 1539 51.3
Gohir.D11G284200 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1444.1 1439 54.1
RcHm_v2.0_Chr2g0126921 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1439.5 1528 52.4
Sabra01G0055900 Salix brachista HOM05D001082 ORTHO05D005120 0.0e+00 1438.7 1619 49.8
MD10G1009800 Malus domestica HOM05D001082 ORTHO05D005120 0.0e+00 1428.7 1518 51.5
PSO063G6006 Papaver somniferum HOM05D001082 ORTHO05D005120 0.0e+00 1427.2 1517 50.6
CANSAT78G0369 Cannabis sativa HOM05D001082 ORTHO05D005120 0.0e+00 1404.4 1520 50.2
BcaC02g08190 Brassica carinata HOM05D001082 ORTHO05D005120 0.0e+00 1396.3 1038 72.7
Prupe.5G022000 Prunus persica HOM05D001082 ORTHO05D005120 0.0e+00 1395.9 1525 51.3
Duzib235G1067 Durio zibethinus HOM05D001082 ORTHO05D005120 0.0e+00 1395.2 1302 55.8
FAN05G0906 Fragaria x ananassa HOM05D001082 ORTHO05D005120 0.0e+00 1389.4 1528 51.1
BolC4t27268H Brassica oleracea HOM05D001082 ORTHO05D005120 0.0e+00 1388.2 1041 72.1
Ca_11506_v3 Cicer arietinum L. HOM05D001082 ORTHO05D005120 0.0e+00 1384.8 1515 50.0
FvH4_6g26400 Fragaria vesca HOM05D001082 ORTHO05D005120 0.0e+00 1384.8 1510 51.1
C04p57470 Brassica napus HOM05D001082 ORTHO05D005120 0.0e+00 1384.0 1039 72.5
Glyma.13G142200 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1382.5 1512 49.7
Aqoxy5G03217 Aquilegia oxysepala HOM05D001082 ORTHO05D005120 0.0e+00 1381.3 1522 50.4
Phvul.007G218900 Phaseolus vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1377.8 1511 49.2
Nn3g20376 Nelumbo nucifera HOM05D001082 ORTHO05D005120 0.0e+00 1373.2 1519 50.2
Glyma.10G055100 Glycine max HOM05D001082 ORTHO05D005120 0.0e+00 1372.8 1517 49.4
MSTRG.5181 Avicennia marina HOM05D001082 ORTHO05D005120 0.0e+00 1365.1 1518 48.9
Psat6g073960 Pisum sativum HOM05D001082 ORTHO05D005120 0.0e+00 1363.2 1513 48.7
PGR042G2652 Punica granatum HOM05D001082 ORTHO05D005120 0.0e+00 1359.0 1519 49.6
arahy.Tifrunner.gnm1.ann1.922X53 Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1358.6 1534 48.7
arahy.Tifrunner.gnm1.ann1.Y1BA5Y Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1358.6 1534 48.7
Migut.N00999 Erythranthe guttata HOM05D001082 ORTHO05D005120 0.0e+00 1358.6 1509 48.4
Medtr1g063180 Medicago truncatula HOM05D001082 ORTHO05D005120 0.0e+00 1357.0 1510 48.9
Sopen01g044980 Solanum pennellii HOM05D001082 ORTHO05D005120 0.0e+00 1351.7 1511 48.1
Lj5C310G5 Lonicera japonica HOM05D001082 ORTHO05D005120 0.0e+00 1349.0 1522 49.5
TPR.G11274 Trifolium pratense HOM05D001082 ORTHO05D005120 0.0e+00 1348.2 1509 48.8
Rhsim11G0112000 Rhododendron simsii HOM05D001082 ORTHO05D005120 0.0e+00 1344.3 1517 48.6
Lj5g0014962 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1340.1 1504 48.3
Peaxi162Scf00194g00732 Petunia axillaris HOM05D001082 ORTHO05D005120 0.0e+00 1337.8 1539 47.4
RcHm_v2.0_Chr4g0402211 Rosa chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1334.7 1505 49.6
Nitab4.5_0000399g0040 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1331.2 1508 47.8
HanXRQChr14g0452101 Helianthus annuus HOM05D001082 ORTHO05D005120 0.0e+00 1324.3 1508 48.3
Sed0025950 Sechium edule HOM05D001082 ORTHO05D005120 0.0e+00 1323.1 1520 48.1
MELO3C020407.2 Cucumis melo HOM05D001082 ORTHO05D005120 0.0e+00 1322.8 1524 47.2
Lalb_Chr21g0315021 Lupinus albus HOM05D001082 ORTHO05D005120 0.0e+00 1318.9 1514 48.0
CsaV3_2G011850 Cucumis sativus L. HOM05D001082 ORTHO05D005120 0.0e+00 1315.8 1523 47.3
Gohir.A11G274000 Gossypium hirsutum HOM05D001082 ORTHO05D005120 0.0e+00 1308.5 1238 55.6
ECA238G2349 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1305.8 1505 46.9
DCAR_003267 Daucus carota HOM05D001082 ORTHO05D005120 0.0e+00 1299.3 1520 47.5
EL10Ac6g13928 Beta vulgaris HOM05D001082 ORTHO05D005120 0.0e+00 1294.3 1501 47.0
AUR62042820 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1288.1 1541 45.9
SalBow1G7939 Salvia bowleyana HOM05D001082 ORTHO05D005120 0.0e+00 1286.6 1530 46.3
Sc07g0003370 Simmondsia chinensis HOM05D001082 ORTHO05D005120 0.0e+00 1281.2 1511 47.4
Haze_11087 Corylus avellana HOM05D001082 ORTHO05D005120 0.0e+00 1258.0 1208 56.0
Lsat_1_v5_gn_7_54700 Lactuca sativa HOM05D001082 ORTHO05D005120 0.0e+00 1255.0 1518 46.4
Ah.03g136660 Amaranthus hybridus HOM05D001082 ORTHO05D005120 0.0e+00 1241.5 1459 47.1
SGA_v2.0_scaffold8G04471 Striga asiatica HOM05D001082 ORTHO05D005120 0.0e+00 1206.8 1515 45.0
Lj3g0009617 Lotus japonicus HOM05D001082 ORTHO05D005120 0.0e+00 1160.6 1519 44.6
AUR62032513 Chenopodium quinoa HOM05D001082 ORTHO05D005120 0.0e+00 1157.1 1761 39.1
ATR0810G183 Amborella trichopoda HOM05D001082 ORTHO05D005120 0.0e+00 1151.0 1519 42.3
arahy.Tifrunner.gnm1.ann1.CLUS6A Arachis hypogaea HOM05D001082 ORTHO05D005120 0.0e+00 1143.6 1562 44.0
Nitab4.5_0004090g0140 Nicotiana tabacum HOM05D001082 ORTHO05D005120 0.0e+00 1135.9 1399 45.5
ECA233G1839 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1116.3 1559 41.9
ECA233G1970 Erigeron canadensis HOM05D001082 ORTHO05D005120 0.0e+00 1111.3 1538 42.1
Eucgr.G00034 Eucalyptus grandis HOM05D001082 ORTHO05D005120 0.0e+00 1110.9 1170 53.2
Solyc01g102540.3 Solanum lycopersicum HOM05D001082 ORTHO05D005120 0.0e+00 1090.9 1102 51.9
Zm00001eb232140 Zea mays HOM05D001082 ORTHO05D005120 0.0e+00 1085.9 1510 42.5
Hma1.2p1_0052F.1_g030150 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.3e-309 1067.0 1050 54.7
Oeu010602.3 Olea europaea HOM05D001082 ORTHO05D005120 3.7e-304 1048.9 1137 50.8
MD05G1161100 Malus domestica HOM05D001082 ORTHO05D005120 3.3e-292 1009.2 1130 49.5
CAN.G1379.30 Capsicum annuum HOM05D001082 ORTHO05D005120 2.1e-283 979.9 979 52.1
CDE01G0790 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 1.4e-239 834.3 1148 42.1
BcaC02g08126 Brassica carinata HOM05D001082 ORTHO05D005120 6.5e-216 755.7 500 78.2
AagrBONN_evm.TU.Sc2ySwM_362.2782 Anthoceros agrestis HOM05D001082 ORTHO05D005120 8.5e-216 755.4 1530 33.6
Pp3c11_26590 Physcomitrium patens HOM05D001082 ORTHO05D005120 2.0e-212 744.2 1544 33.9
Mapoly0008s0081 Marchantia polymorpha HOM05D001082 ORTHO05D005120 3.8e-208 729.9 1546 33.5
SEGI_00916 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.6e-206 723.4 1150 37.3
C04p58080 Brassica napus HOM05D001082 ORTHO05D005120 2.0e-196 691.0 451 78.7
SHI21156 Sapria himalayana HOM05D001082 ORTHO05D005120 5.8e-196 689.5 1018 42.3
Atru.chr12.2422 Acer truncatum HOM05D001082 ORTHO05D005120 1.6e-193 681.4 596 58.2
Atru.chr6.17 Acer truncatum HOM05D001082 ORTHO05D005120 3.2e-186 657.1 581 58.5
SMO239G0052 Selaginella moellendorffii HOM05D001082 ORTHO05D005120 2.7e-185 654.1 1394 32.6
ECA233G1393 Erigeron canadensis HOM05D001082 ORTHO05D005120 1.3e-179 635.2 977 36.9
VMungo0720G0635 Vigna mungo HOM05D001082 ORTHO05D000001 2.8e-166 590.9 581 54.6
Atru.chr12.2421 Acer truncatum HOM05D001082 ORTHO05D005120 1.2e-164 585.5 640 49.8
Hma1.2p1_0052F.1_g030160 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.0e-160 572.4 601 51.2
BolC4t27335H Brassica oleracea HOM05D001082 ORTHO05D005120 3.5e-153 547.4 392 74.5
ClCG06G008360 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.1e-151 542.3 612 49.8
ECA233G2822 Erigeron canadensis HOM05D001082 ORTHO05D005120 3.8e-131 474.2 571 47.5
MD05G1162400 Malus domestica HOM05D001082 ORTHO05D005120 3.2e-122 444.5 491 51.7
Cpa.g.sc21.217 Carica papaya HOM05D001082 ORTHO05D005120 1.5e-119 435.6 525 49.0
SEGI_12765 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-113 416.0 607 41.0
unitig_22.g5791 Utricularia gibba HOM05D001082 ORTHO05D005120 4.4e-111 407.5 565 41.6
CBR_g55211 Chara braunii HOM05D000019 ORTHO05D000048 1.8e-96 359.0 992 27.5
Oeu010603.1 Olea europaea HOM05D001082 ORTHO05D005120 9.8e-87 326.6 394 48.7
Cpa.g.sc21.218 Carica papaya HOM05D001082 ORTHO05D005120 3.3e-82 311.6 300 52.7
ClCG06G008350 Citrullus lanatus HOM05D001082 ORTHO05D005120 5.4e-77 294.3 328 46.3
ClCG06G008340 Citrullus lanatus HOM05D001082 ORTHO05D005120 1.2e-65 256.5 545 32.7
VMungo0720G1958 Vigna mungo HOM05D001082 ORTHO05D005120 1.2e-65 256.5 363 40.5
MD08G1158600 Malus domestica HOM05D001082 ORTHO05D005120 8.9e-64 250.4 451 39.7
Cpa.g.sc21.222 Carica papaya HOM05D001082 ORTHO05D005120 3.2e-61 241.9 273 48.4
MD05G1161300 Malus domestica HOM05D001082 ORTHO05D005120 1.1e-56 226.9 414 38.2
FAN09G1182 Fragaria x ananassa HOM05D001082 ORTHO05D005120 1.4e-56 226.5 212 54.2
SEGI_15028 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 1.2e-55 223.4 359 36.2
SEGI_08839 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.2e-53 215.3 296 41.9
CDE01G0761 Ceratophyllum demersum HOM05D001082 ORTHO05D005120 4.2e-53 214.9 331 37.8
BcaC07g37555 Brassica carinata HOM05D001082 ORTHO05D005120 2.3e-51 209.1 121 87.6
Solyc01g102550.4 Solanum lycopersicum HOM05D001082 ORTHO05D005120 1.9e-50 206.1 311 38.3
Os02g0142500 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 3.3e-50 205.3 204 50.5
CAN.G1379.29 Capsicum annuum HOM05D001082 ORTHO05D005120 2.4e-48 199.1 466 29.8
MD05G1162300 Malus domestica HOM05D004954 ORTHO05D006267 7.9e-44 184.1 266 42.5
unitig_22.g5790 Utricularia gibba HOM05D001082 ORTHO05D005120 6.7e-43 181.0 801 23.6
Hma1.2p1_0052F.1_g030140 Hydrangea macrophylla HOM05D001082 ORTHO05D005120 1.9e-42 179.5 216 44.9
HPP92_015361 Vanilla planifolia HOM05D001082 ORTHO05D005120 4.8e-41 174.9 377 34.2
MD08G1158700 Malus domestica HOM05D001082 ORTHO05D005120 6.4e-38 164.5 284 37.0
Cpa.g.sc21.215 Carica papaya HOM05D001082 ORTHO05D005120 1.4e-37 163.3 124 62.9
SEGI_20053 Sequoiadendron giganteum HOM05D001082 ORTHO05D005120 3.2e-37 162.2 309 32.4
TAR339G0004 Trochodendron aralioides HOM05D001082 ORTHO05D005120 7.1e-37 161.0 248 39.5
ClCG06G008370 Citrullus lanatus HOM05D001082 ORTHO05D005120 3.5e-36 158.7 131 58.0
BcaB06g28204 Brassica carinata HOM05D001082 ORTHO05D005120 1.3e-33 150.2 161 55.3
Os02g0142950 Oryza sativa ssp. japonica HOM05D001082 ORTHO05D005120 7.6e-31 141.0 120 53.3
VMungo0720G0600 Vigna mungo HOM05D001082 ORTHO05D010195 4.2e-29 135.2 202 40.6
MD10G1160000 Malus domestica HOM05D001082 ORTHO05D005120 9.3e-29 134.0 196 41.3
BolC8t47896H Brassica oleracea HOM05D001082 ORTHO05D039247 6.7e-27 127.9 67 88.1
SHI21155 Sapria himalayana HOM05D001082 ORTHO05D005120 5.7e-26 124.8 196 38.8
MD05G1063300 Malus domestica HOM05D001082 ORTHO05D005120 2.1e-25 122.9 183 42.1
Psat4g135880 Pisum sativum HOM05D001082 ORTHO05D005120 3.7e-25 122.1 180 42.2
A08p08590 Brassica napus HOM05D001082 ORTHO05D005120 3.1e-24 119.0 78 75.6
Lsat_1_v5_gn_8_801 Lactuca sativa HOM05D000349 ORTHO05D005120 4.1e-24 118.6 116 55.2
VMungo0720G2272 Vigna mungo HOM05D001082 ORTHO05D005120 5.3e-24 118.2 122 47.5
BcaC02g08127 Brassica carinata HOM05D001082 ORTHO05D005120 1.2e-23 117.1 123 56.1
BolC4t27334H Brassica oleracea HOM05D001082 ORTHO05D005120 1.7e-22 113.2 123 55.3
VMungo0720G0348 Vigna mungo HOM05D001082 ORTHO05D005120 2.1e-20 106.3 149 40.9
Cre07.g324000 Chlamydomonas reinhardtii HOM05D001082 ORTHO05D005120 4.3e-18 98.6 693 22.8
CBR_g55210 Chara braunii HOM05D000019 ORTHO05D000048 3.8e-14 85.5 254 27.2
BolC8t47897H Brassica oleracea HOM05D001082 ORTHO05D005120 4.2e-13 82.0 48 85.4
MD07G1280900 Malus domestica HOM05D001082 ORTHO05D005120 5.5e-13 81.6 95 47.4
MD00G1034800 Malus domestica HOM05D001082 ORTHO05D005120 2.7e-12 79.3 95 46.3
GSVIVG01013013001 Vitis vinifera HOM05D001082 ORTHO05D005120 2.7e-12 79.3 104 43.3
MCO16G497 Micromonas commoda HOM05D001082 ORTHO05D005120 2.8e-09 69.3 179 31.3
Nitab4.5_0004090g0150 Nicotiana tabacum HOM05D001082 ORTHO05D005120 4.5e-07 62.0 37 75.7
MBI12_g24277_MAGBIO Magnolia biondii HOM05D004967 ORTHO05D006146 5.0e-06 58.5 67 46.3


User provided reference genes

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