Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G40900 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1641.3 812 100.0
AT1G27470 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1576.2 812 95.4
Carub.0001s2603 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1547.3 812 93.7
Thhalv10006817m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1458.7 814 88.2
CARHR027080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1447.6 813 87.8
Sp1g23720 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1442.2 813 88.1
BcaC05g26751 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1374.0 816 84.6
BcaC01g01603 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1355.9 814 83.3
BcaC01g06947 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1355.5 814 83.9
C03p74200 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1352.8 815 83.2
BraA08t34575Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1349.0 815 83.2
A08p26240 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1346.6 815 82.9
BcaC05g26567 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1345.1 815 82.8
BraA09t39357Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1334.7 806 83.5
A09p38510 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1321.6 803 83.4
C05p26190 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1319.3 807 82.5
BolC5t31333H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1316.2 801 83.3
BolC3t19677H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1308.9 808 81.4
Aa31sc622G20 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1268.1 822 76.3
Thhalv10028433m.g Eutrema salsugineum HOM05D003723 ORTHO05D004306 0.0e+00 1258.0 818 76.2
Aa31LG7G10210 Aethionema arabicum HOM05D003723 ORTHO05D004306 0.0e+00 1257.3 819 77.0
AT4G07410 Arabidopsis thaliana HOM05D003723 ORTHO05D004306 0.0e+00 1251.5 818 76.2
Sp6g10450 Schrenkiella parvula HOM05D003723 ORTHO05D004306 0.0e+00 1251.5 817 75.9
AL6G41310 Arabidopsis lyrata HOM05D003723 ORTHO05D004306 0.0e+00 1250.7 817 76.1
BcaB01g02881 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1243.8 816 76.2
Carub.0006s2652 Capsella rubella HOM05D003723 ORTHO05D004306 0.0e+00 1241.1 821 75.5
BolC3t15689H Brassica oleracea HOM05D003723 ORTHO05D004306 0.0e+00 1228.4 816 74.8
C03p33700 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1228.0 816 74.8
CARHR287080 Cardamine hirsuta HOM05D003723 ORTHO05D004306 0.0e+00 1227.6 816 75.2
A03p27910 Brassica napus HOM05D003723 ORTHO05D004306 0.0e+00 1220.3 816 74.6
BcaC01g04785 Brassica carinata HOM05D003723 ORTHO05D004306 0.0e+00 1218.0 814 74.4
BraA03t12004Z Brassica rapa HOM05D003723 ORTHO05D004306 0.0e+00 1216.4 816 74.3
THA.LOC104824968 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1161.7 832 71.0
THA.LOC104825785 Tarenaya hassleriana HOM05D003723 ORTHO05D004306 0.0e+00 1127.1 821 69.8
Cpa.g.sc142.42 Carica papaya HOM05D003723 ORTHO05D004306 0.0e+00 1119.8 827 67.7
Cfa013762 Carpinus fangiana HOM05D003723 ORTHO05D004306 1.1e-305 1053.1 828 64.9
Ciclev10000301m.g Citrus clementina HOM05D003723 ORTHO05D004306 5.9e-304 1047.3 824 64.8
Potri.002G117500 Populus trichocarpa HOM05D003723 ORTHO05D004306 7.9e-301 1036.9 829 63.8
Potri.014G014900 Populus trichocarpa HOM05D003723 ORTHO05D004306 2.3e-300 1035.4 825 64.8
CiPaw.08G050900 Carya illinoinensis HOM05D003723 ORTHO05D004306 3.9e-300 1034.6 825 64.5
Atru.chr13.849 Acer truncatum HOM05D003723 ORTHO05D004306 6.7e-300 1033.9 832 63.9
Prupe.1G421300 Prunus persica HOM05D003723 ORTHO05D004306 9.7e-299 1030.0 829 65.0
Sabra02G0092000 Salix brachista HOM05D003723 ORTHO05D004306 9.7e-299 1030.0 843 63.3
CSS0046104 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.3e-298 1029.6 825 63.8
QL12p038269 Quercus lobata HOM05D003723 ORTHO05D004306 1.1e-297 1026.5 826 63.2
QL93p0154_0009 Quercus lobata HOM05D003723 ORTHO05D004306 1.4e-297 1026.2 826 63.2
Haze_22418 Corylus avellana HOM05D003723 ORTHO05D004306 9.1e-297 1023.5 866 61.7
Sabra14G0008900 Salix brachista HOM05D003723 ORTHO05D004306 1.5e-296 1022.7 829 63.6
Dinv44943 Davidia involucrata HOM05D003723 ORTHO05D004306 2.0e-296 1022.3 826 63.7
CiPaw.07G173600 Carya illinoinensis HOM05D003723 ORTHO05D004306 1.7e-295 1019.2 829 63.8
Manes.02G183600 Manihot esculenta HOM05D003723 ORTHO05D004306 1.5e-294 1016.1 825 62.3
MD08G1080300 Malus domestica HOM05D003723 ORTHO05D004306 9.4e-294 1013.4 830 63.3
MD15G1067400 Malus domestica HOM05D003723 ORTHO05D004306 2.1e-293 1012.3 829 63.3
TWI56G1015 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 1.0e-292 1010.0 830 62.0
Lj4A757T32 Lonicera japonica HOM05D003723 ORTHO05D004306 6.3e-290 1000.7 826 61.0
MELO3C016827.2 Cucumis melo HOM05D003723 ORTHO05D004306 1.8e-289 999.2 828 63.2
Eucgr.F02239 Eucalyptus grandis HOM05D003723 ORTHO05D004306 1.8e-289 999.2 823 61.8
Thecc.04G063000 Theobroma cacao HOM05D003723 ORTHO05D004306 9.1e-289 996.9 834 61.6
Cc10_g05060 Coffea canephora HOM05D003723 ORTHO05D004306 7.7e-288 993.8 833 60.9
TAR628G0363 Trochodendron aralioides HOM05D003723 ORTHO05D004306 1.0e-287 993.4 823 62.7
CsaV3_4G035140 Cucumis sativus L. HOM05D003723 ORTHO05D004306 1.7e-287 992.6 828 62.3
Sed0028163 Sechium edule HOM05D003723 ORTHO05D004306 8.5e-287 990.3 822 61.9
MSTRG.24381 Avicennia marina HOM05D003723 ORTHO05D004306 7.2e-286 987.3 829 61.5
ClCG05G020690 Citrullus lanatus HOM05D003723 ORTHO05D004306 2.7e-285 985.3 834 62.1
Nitab4.5_0003725g0010 Nicotiana tabacum HOM05D003723 ORTHO05D004306 8.0e-285 983.8 828 60.6
TWI12G0955 Tripterygium wilfordii HOM05D003723 ORTHO05D004306 8.0e-285 983.8 826 60.8
SGA_v2.0_scaffold28G11839 Striga asiatica HOM05D003723 ORTHO05D004306 2.3e-284 982.2 830 60.4
Gohir.D10G114400 Gossypium hirsutum HOM05D003723 ORTHO05D004306 9.8e-283 976.9 836 59.1
ECA247G0551 Erigeron canadensis HOM05D003723 ORTHO05D004306 4.1e-281 971.5 820 60.9
Gorai.011G126100 Gossypium raimondii HOM05D003723 ORTHO05D004306 7.0e-281 970.7 835 58.9
CANSAT25G0987 Cannabis sativa HOM05D003723 ORTHO05D004306 9.1e-281 970.3 822 60.1
PGR031G2627 Punica granatum HOM05D003723 ORTHO05D004306 2.7e-280 968.8 827 59.6
Nitab4.5_0000497g0070 Nicotiana tabacum HOM05D003723 ORTHO05D004306 3.5e-280 968.4 826 59.8
Duzib151G0173 Durio zibethinus HOM05D003723 ORTHO05D004306 2.2e-279 965.7 836 59.9
DCAR_009874 Daucus carota HOM05D003723 ORTHO05D004306 3.2e-278 961.8 832 59.6
PGSC0003DMG400011543 Solanum tuberosum HOM05D003723 ORTHO05D004306 5.5e-278 961.1 825 59.0
AUR62022465 Chenopodium quinoa HOM05D003723 ORTHO05D004306 9.4e-278 960.3 836 59.8
Gohir.A02G089200 Gossypium hirsutum HOM05D003723 ORTHO05D004306 2.1e-277 959.1 835 58.6
Nitab4.5_0002314g0030 Nicotiana tabacum HOM05D003723 ORTHO05D004306 4.7e-277 958.0 824 59.0
AUR62043254 Chenopodium quinoa HOM05D003723 ORTHO05D004306 8.0e-277 957.2 832 59.4
Lalb_Chr22g0355711 Lupinus albus HOM05D003723 ORTHO05D004306 3.0e-276 955.3 818 59.3
Sopen12g030290 Solanum pennellii HOM05D003723 ORTHO05D004306 8.8e-276 953.7 825 58.9
Lj4C72T17 Lonicera japonica HOM05D003723 ORTHO05D004306 4.4e-275 951.4 824 59.1
Solyc12g088290.2 Solanum lycopersicum HOM05D003723 ORTHO05D004306 1.1e-273 946.8 825 58.4
HanXRQChr10g0292161 Helianthus annuus HOM05D003723 ORTHO05D004306 1.8e-273 946.0 813 59.5
HanXRQChr10g0292141 Helianthus annuus HOM05D003723 ORTHO05D004306 2.0e-272 942.6 818 59.5
Lalb_Chr14g0368121 Lupinus albus HOM05D003723 ORTHO05D004306 4.5e-272 941.4 822 58.4
Peaxi162Scf00081g02729 Petunia axillaris HOM05D003723 ORTHO05D004306 5.9e-272 941.0 883 55.9
Nitab4.5_0009040g0020 Nicotiana tabacum HOM05D003723 ORTHO05D004306 7.7e-272 940.6 864 56.6
PGSC0003DMG401010623 Solanum tuberosum HOM05D003723 ORTHO05D004306 1.3e-271 939.9 817 59.0
FvH4_2g32880 Fragaria vesca HOM05D003723 ORTHO05D004306 1.9e-270 936.0 835 59.2
FAN24G1723 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.5e-270 935.6 835 59.2
RcHm_v2.0_Chr6g0309831 Rosa chinensis HOM05D003723 ORTHO05D004306 3.3e-270 935.3 835 58.8
arahy.Tifrunner.gnm1.ann1.82WHW6 Arachis hypogaea HOM05D003723 ORTHO05D004306 5.6e-270 934.5 811 58.0
Gohir.D02G112100 Gossypium hirsutum HOM05D003723 ORTHO05D004306 7.2e-270 934.1 835 57.6
Peaxi162Scf00160g00521 Petunia axillaris HOM05D003723 ORTHO05D004306 7.2e-270 934.1 804 59.6
Lj5g0007294 Lotus japonicus HOM05D003723 ORTHO05D004306 2.1e-269 932.6 817 58.0
Sc02g0007980 Simmondsia chinensis HOM05D003723 ORTHO05D004306 2.8e-269 932.2 829 58.1
FAN15G1506 Fragaria x ananassa HOM05D003723 ORTHO05D004306 3.6e-269 931.8 835 58.8
Gorai.005G127000 Gossypium raimondii HOM05D003723 ORTHO05D004306 3.6e-269 931.8 863 56.1
EL10Ac1g02364 Beta vulgaris HOM05D003723 ORTHO05D004306 1.0e-268 930.2 827 56.2
vmacro16900 Vaccinium macrocarpon HOM05D003723 ORTHO05D004306 3.0e-268 928.7 813 59.9
FAN20G3047 Fragaria x ananassa HOM05D003723 ORTHO05D004306 6.8e-268 927.5 835 58.6
Solyc04g077680.3 Solanum lycopersicum HOM05D003723 ORTHO05D004306 2.0e-267 926.0 817 58.3
Sopen04g031320 Solanum pennellii HOM05D003723 ORTHO05D004306 6.4e-266 921.0 817 58.1
Manes.18G095200 Manihot esculenta HOM05D003723 ORTHO05D004306 1.8e-265 919.5 717 64.4
CSS0010741 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.1e-265 918.3 702 66.2
Glyma.14G089042 Glycine max HOM05D003723 ORTHO05D004306 9.2e-265 917.1 828 56.6
arahy.Tifrunner.gnm1.ann1.YU9IEB Arachis hypogaea HOM05D003723 ORTHO05D004306 1.2e-264 916.8 817 57.4
SalBow2G1921 Salvia bowleyana HOM05D003723 ORTHO05D004306 3.5e-264 915.2 796 58.8
VMungo0647G0070 Vigna mungo HOM05D003723 ORTHO05D004306 2.5e-262 909.1 826 57.6
Aqoxy3G00456 Aquilegia oxysepala HOM05D003723 ORTHO05D004306 5.6e-262 907.9 821 58.1
Oeu014279.1 Olea europaea HOM05D003723 ORTHO05D004306 9.5e-262 907.1 751 61.1
Glyma.17G233900 Glycine max HOM05D003723 ORTHO05D004306 1.6e-261 906.4 831 56.8
FAN27G2988 Fragaria x ananassa HOM05D003723 ORTHO05D004306 2.8e-261 905.6 835 58.0
Hma1.2p1_0210F.1_g089420 Hydrangea macrophylla HOM05D003723 ORTHO05D004306 1.4e-260 903.3 762 61.4
PSO541G5768 Papaver somniferum HOM05D003723 ORTHO05D004306 6.8e-260 901.0 817 56.8
Phvul.001G028900 Phaseolus vulgaris HOM05D003723 ORTHO05D004306 8.9e-260 900.6 829 57.5
Hund05292 Selenicereus undatus HOM05D003723 ORTHO05D004306 1.1e-257 893.6 735 61.4
COL.COLO4_29256 Corchorus olitorius HOM05D003723 ORTHO05D004306 7.8e-256 887.5 833 57.1
SGA_v2.0_scaffold152G36813 Striga asiatica HOM05D003723 ORTHO05D004306 1.7e-255 886.3 832 55.4
GSVIVG01009321001 Vitis vinifera HOM05D003723 ORTHO05D004306 6.2e-253 877.9 815 56.4
PSO017G5808 Papaver somniferum HOM05D003723 ORTHO05D004306 9.8e-251 870.5 818 55.4
Gohir.A10G151900 Gossypium hirsutum HOM05D003723 ORTHO05D004306 1.3e-250 870.2 832 54.8
Ah.05g167030 Amaranthus hybridus HOM05D003723 ORTHO05D004306 1.1e-246 857.1 764 58.0
DCAR_012822 Daucus carota HOM05D003723 ORTHO05D004306 1.5e-246 856.7 823 55.3
DCAR_004814 Daucus carota HOM05D003723 ORTHO05D004306 2.8e-245 852.4 860 53.6
Sed0011873 Sechium edule HOM05D003723 ORTHO05D004306 1.4e-244 850.1 732 60.5
CDE07G0463 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.2e-242 842.8 724 58.7
Psat6g017680 Pisum sativum HOM05D003723 ORTHO05D004306 8.1e-237 824.3 826 53.9
Ca_13209_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 1.2e-235 820.5 817 51.9
Zm00001eb056350 Zea mays HOM05D003723 ORTHO05D004306 7.8e-232 807.7 833 51.4
Actinidia10210 Actinidia chinensis HOM05D003723 ORTHO05D004306 5.1e-231 805.1 633 64.8
Os03g0735100 Oryza sativa ssp. japonica HOM05D003723 ORTHO05D004306 6.6e-231 804.7 828 52.1
ATR0739G177 Amborella trichopoda HOM05D003723 ORTHO05D004306 1.1e-230 803.9 833 52.6
TPR.G12983 Trifolium pratense HOM05D003723 ORTHO05D004306 4.8e-229 798.5 825 52.4
Zm00001eb215430 Zea mays HOM05D003723 ORTHO05D004306 3.4e-227 792.3 843 50.7
unitig_0.g1045 Utricularia gibba HOM05D003723 ORTHO05D004306 1.7e-226 790.0 834 50.4
HPP92_003353 Vanilla planifolia HOM05D003723 ORTHO05D004306 9.3e-217 757.7 695 56.4
Medtr1g017880 Medicago truncatula HOM05D003723 ORTHO05D004306 4.6e-216 755.4 820 49.8
TPR.G32238 Trifolium pratense HOM05D003723 ORTHO05D004306 1.3e-215 753.8 837 50.9
Medtr8g014080 Medicago truncatula HOM05D003723 ORTHO05D004306 1.8e-215 753.4 816 51.5
Lsat_1_v5_gn_1_1120 Lactuca sativa HOM05D003723 ORTHO05D004306 9.4e-177 624.8 584 57.9
Ca_23258_v3 Cicer arietinum L. HOM05D003723 ORTHO05D004306 3.5e-171 606.3 706 48.7
Mapoly0027s0127 Marchantia polymorpha HOM05D003723 ORTHO05D004306 4.0e-167 592.8 897 39.2
SMO367G0860 Selaginella moellendorffii HOM05D003723 ORTHO05D004306 2.2e-157 560.5 853 37.9
Pp3c22_14490 Physcomitrium patens HOM05D003723 ORTHO05D004306 2.7e-155 553.5 906 37.6
Pp3c19_13580 Physcomitrium patens HOM05D003723 ORTHO05D004306 5.0e-146 522.7 918 36.4
Dinv39214 Davidia involucrata HOM05D003723 ORTHO05D004306 2.8e-144 516.9 426 61.3
CDE04G2329 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 1.2e-136 491.5 406 62.6
CBR_g57871 Chara braunii HOM05D003723 ORTHO05D004306 7.3e-129 465.7 912 33.7
DCAR_032227 Daucus carota HOM05D003723 ORTHO05D004306 2.3e-122 444.1 452 54.6
AagrBONN_evm.TU.Sc2ySwM_344.864 Anthoceros agrestis HOM05D003723 ORTHO05D004306 3.0e-114 417.2 626 38.7
Oeu036976.1 Olea europaea HOM05D003723 ORTHO05D004306 1.8e-111 407.9 318 64.8
SEGI_24646 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 2.1e-107 394.4 506 43.7
Actinidia19301 Actinidia chinensis HOM05D003723 ORTHO05D004306 4.9e-101 373.2 294 65.6
Lsat_1_v5_gn_1_440 Lactuca sativa HOM05D003723 ORTHO05D004306 2.9e-85 320.9 260 63.1
SEGI_10786 Sequoiadendron giganteum HOM05D003723 ORTHO05D004306 7.2e-84 316.2 311 52.4
Actinidia19302 Actinidia chinensis HOM05D003723 ORTHO05D004306 1.8e-79 301.6 253 59.7
Pp3c18_6690 Physcomitrium patens HOM05D003723 ORTHO05D004306 1.4e-76 292.0 687 32.2
Lsat_1_v5_gn_0_45940 Lactuca sativa HOM05D003723 ORTHO05D004306 6.1e-67 260.0 224 57.6
Dinv39213 Davidia involucrata HOM05D003723 ORTHO05D004306 2.6e-62 244.6 156 76.3
Oeu053086.3 Olea europaea HOM05D003723 ORTHO05D004306 7.2e-60 236.5 265 54.0
DCAR_032226 Daucus carota HOM05D003723 ORTHO05D004306 1.2e-59 235.7 257 48.2
MCO10G249 Micromonas commoda HOM05D003723 ORTHO05D004306 1.6e-59 235.3 929 24.5
Cre13.g606850 Chlamydomonas reinhardtii HOM05D003723 ORTHO05D004306 5.4e-47 193.7 892 24.3
TAR376G0468 Trochodendron aralioides HOM05D003723 ORTHO05D004306 5.0e-45 187.2 119 78.2
HanXRQChr14g0443971 Helianthus annuus HOM05D003723 ORTHO05D004306 8.0e-43 179.9 188 54.3
Zm00001eb382220 Zea mays HOM05D002544 ORTHO05D007856 4.9e-40 170.6 199 47.7
Zm00001eb280470 Zea mays HOM05D003723 ORTHO05D004306 2.7e-38 164.9 264 39.0
PRCOL_00004412 Prasinoderma coloniale HOM05D003723 ORTHO05D004306 7.8e-38 163.3 462 29.0
CDE04G2756 Ceratophyllum demersum HOM05D003723 ORTHO05D004306 2.8e-35 154.8 190 45.8
TAR376G0365 Trochodendron aralioides HOM05D003723 ORTHO05D004306 2.0e-33 148.7 102 70.6
TAR376G0760 Trochodendron aralioides HOM05D003723 ORTHO05D004306 3.2e-31 141.4 100 65.0
Migut.N02791 Erythranthe guttata HOM05D003723 ORTHO05D004306 9.2e-31 139.8 99 65.7
Cfa027112 Carpinus fangiana HOM05D003723 ORTHO05D004306 2.3e-26 125.2 369 27.4
Psat7g031120 Pisum sativum HOM05D003723 ORTHO05D004306 2.1e-22 112.1 96 61.5
HanXRQChr15g0495401 Helianthus annuus HOM05D003723 ORTHO05D004306 1.1e-18 99.8 117 45.3
CSS0002287 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 2.9e-16 91.7 107 43.9
CSS0044410 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 8.3e-16 90.1 107 43.9
CSS0021932 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 1.1e-15 89.7 107 43.9
CSS0047227 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 4.6e-14 84.3 107 41.1
CSS0041779 Camellia sinensis var. sinensis HOM05D003723 ORTHO05D004306 3.3e-12 78.2 70 52.9
CAN.G400.11 Capsicum annuum HOM05D002670 ORTHO05D000002 9.9e-09 66.6 109 41.3
Lj4P754T16 Lonicera japonica HOM05D003723 ORTHO05D004306 7.1e-07 60.5 42 59.5


User provided reference genes

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