Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G28870 Arabidopsis lyrata HOM05D000912 ORTHO05D012941 2.3e-51 205.3 106 100.0
AT1G16705 Arabidopsis thaliana HOM05D000912 ORTHO05D012941 1.1e-37 159.8 128 73.4
Carub.0001s1644 Capsella rubella HOM05D000912 ORTHO05D012941 5.6e-21 104.4 119 58.0
BolC8t49375H Brassica oleracea HOM05D000054 ORTHO05D000286 3.4e-18 95.1 134 47.0
BcaB03g13037 Brassica carinata HOM05D000912 ORTHO05D012941 9.8e-18 93.6 130 47.7
THA.LOC104808111 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 2.9e-17 92.0 75 61.3
THA.LOC104812346 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 3.7e-17 91.7 105 47.6
THA.LOC104813621 Tarenaya hassleriana HOM05D000912 ORTHO05D001232 4.9e-17 91.3 75 60.0
Aa31LG4G1980 Aethionema arabicum HOM05D000912 ORTHO05D001232 1.4e-16 89.7 75 61.3
BcaC08g47464 Brassica carinata HOM05D000912 ORTHO05D001232 4.1e-16 88.2 75 61.3
AT1G79000 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 5.4e-16 87.8 75 58.7
BcaC03g15858 Brassica carinata HOM05D000912 ORTHO05D001232 1.2e-15 86.7 89 53.9
A02p22450 Brassica napus HOM05D000912 ORTHO05D001232 1.2e-15 86.7 89 53.9
C02p36130 Brassica napus HOM05D000912 ORTHO05D001232 1.2e-15 86.7 89 53.9
C06p52870 Brassica napus HOM05D000912 ORTHO05D001232 1.2e-15 86.7 75 60.0
BolC2t09626H Brassica oleracea HOM05D000912 ORTHO05D001232 1.2e-15 86.7 89 53.9
BolC6t40305H Brassica oleracea HOM05D000912 ORTHO05D001232 1.2e-15 86.7 75 60.0
BraA02t07249Z Brassica rapa HOM05D000912 ORTHO05D001232 1.2e-15 86.7 89 53.9
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 1.6e-15 86.3 74 60.8
A07p44140 Brassica napus HOM05D000912 ORTHO05D001232 1.6e-15 86.3 106 47.2
BraA07t31922Z Brassica rapa HOM05D000912 ORTHO05D001232 1.6e-15 86.3 106 47.2
Sp5g34050 Schrenkiella parvula HOM05D000912 ORTHO05D001232 1.6e-15 86.3 75 60.0
AT1G16710 Arabidopsis thaliana HOM05D000912 ORTHO05D001232 2.7e-15 85.5 75 57.3
AL2G39460 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 4.6e-15 84.7 75 57.3
AL1G28880 Arabidopsis lyrata HOM05D000912 ORTHO05D001232 6.0e-15 84.3 75 56.0
Carub.0002s2587 Capsella rubella HOM05D000912 ORTHO05D001232 7.8e-15 84.0 106 45.3
CARHR017170 Cardamine hirsuta HOM05D000912 ORTHO05D001232 7.8e-15 84.0 94 50.0
Sp1g14860 Schrenkiella parvula HOM05D000912 ORTHO05D001232 1.0e-14 83.6 75 56.0
CARHR072670 Cardamine hirsuta HOM05D000912 ORTHO05D001232 1.3e-14 83.2 75 57.3
Thhalv10018000m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 1.7e-14 82.8 106 46.2
BcaC07g38809 Brassica carinata HOM05D000912 ORTHO05D001232 6.6e-14 80.9 75 56.0
BcaC07g41460 Brassica carinata HOM05D000912 ORTHO05D001232 8.6e-14 80.5 75 54.7
A09p60770 Brassica napus HOM05D000912 ORTHO05D001232 8.6e-14 80.5 75 54.7
C08p17500 Brassica napus HOM05D000912 ORTHO05D001232 8.6e-14 80.5 75 56.0
C08p44350 Brassica napus HOM05D000912 ORTHO05D001232 8.6e-14 80.5 75 54.7
BolC8t49377H Brassica oleracea HOM05D000912 ORTHO05D001232 8.6e-14 80.5 75 56.0
BolC8t51978H Brassica oleracea HOM05D000912 ORTHO05D001232 8.6e-14 80.5 75 54.7
BraA09t41450Z Brassica rapa HOM05D000912 ORTHO05D001232 8.6e-14 80.5 75 54.7
Cpa.g.sc10.17 Carica papaya HOM05D000912 ORTHO05D001232 8.6e-14 80.5 105 41.9
A08p31320 Brassica napus HOM05D000912 ORTHO05D001232 1.5e-13 79.7 75 54.7
BraA08t35055Z Brassica rapa HOM05D000912 ORTHO05D001232 1.5e-13 79.7 75 54.7
Carub.0001s1645 Capsella rubella HOM05D000912 ORTHO05D001232 1.9e-13 79.3 75 53.3
Thhalv10006544m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 1.9e-13 79.3 75 53.3
Aa31LG7G1170 Aethionema arabicum HOM05D000912 ORTHO05D001232 4.3e-13 78.2 75 50.7
BcaC07g38808 Brassica carinata HOM05D000912 ORTHO05D012941 5.6e-13 77.8 92 46.7
BcaB03g13036 Brassica carinata HOM05D000912 ORTHO05D001232 6.2e-12 74.3 75 52.0
TWI12G0824 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 1.2e-10 70.1 72 48.6
TWI18G1361 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 1.2e-10 70.1 72 50.0
A06p12680 Brassica napus HOM05D000912 ORTHO05D001232 4.4e-10 68.2 87 44.8
BraA06t24428Z Brassica rapa HOM05D000912 ORTHO05D001232 9.9e-10 67.0 75 46.7
Sabra14G0003100 Salix brachista HOM05D000912 ORTHO05D001232 9.9e-10 67.0 89 43.8
C05p14980 Brassica napus HOM05D000912 ORTHO05D001232 1.7e-09 66.2 75 45.3
BolC5t30213H Brassica oleracea HOM05D000912 ORTHO05D001232 1.7e-09 66.2 75 45.3
TWI75G1589 Tripterygium wilfordii HOM05D000912 ORTHO05D001232 1.7e-09 66.2 72 47.2
Manes.14G000600 Manihot esculenta HOM05D000912 ORTHO05D001232 2.9e-09 65.5 72 48.6
Manes.14G000700 Manihot esculenta HOM05D000912 ORTHO05D001232 2.9e-09 65.5 72 48.6
C01p52170 Brassica napus HOM05D000912 ORTHO05D001232 3.8e-09 65.1 72 47.2
MELO3C013698.2 Cucumis melo HOM05D000912 ORTHO05D001232 1.1e-08 63.5 97 38.1
CsaV3_3G000040 Cucumis sativus L. HOM05D000912 ORTHO05D001232 1.1e-08 63.5 97 38.1
BcaC09g48285 Brassica carinata HOM05D000912 ORTHO05D001232 1.9e-08 62.8 72 45.8
BolC1t05157H Brassica oleracea HOM05D000912 ORTHO05D001232 1.9e-08 62.8 72 45.8
Gohir.A10G000900 Gossypium hirsutum HOM05D000912 ORTHO05D001232 1.9e-08 62.8 74 50.0
Gorai.011G001400 Gossypium raimondii HOM05D000912 ORTHO05D001232 1.9e-08 62.8 74 50.0
Thecc.06G049100 Theobroma cacao HOM05D000912 ORTHO05D001232 1.9e-08 62.8 72 51.4
Potri.014G000500 Populus trichocarpa HOM05D000912 ORTHO05D001232 2.4e-08 62.4 72 47.2
Aa31LG10G8400 Aethionema arabicum HOM05D000912 ORTHO05D012941 3.2e-08 62.0 57 56.1
Eucgr.E00712 Eucalyptus grandis HOM05D000912 ORTHO05D011835 3.2e-08 62.0 72 47.2
Eucgr.E00932 Eucalyptus grandis HOM05D000912 ORTHO05D011835 3.2e-08 62.0 72 47.2
Gohir.A06G182500 Gossypium hirsutum HOM05D000912 ORTHO05D001232 3.2e-08 62.0 74 50.0
EL10Ac7g18098 Beta vulgaris HOM05D000912 ORTHO05D001232 4.1e-08 61.6 72 47.2
A01p40540 Brassica napus HOM05D000912 ORTHO05D001232 4.1e-08 61.6 72 45.8
BraA01t04088Z Brassica rapa HOM05D000912 ORTHO05D001232 4.1e-08 61.6 72 45.8
Ciclev10027674m.g Citrus clementina HOM05D000912 ORTHO05D001232 4.1e-08 61.6 74 47.3
Sed0017205 Sechium edule HOM05D000912 ORTHO05D001232 5.4e-08 61.2 97 39.2
Atru.chr3.4082 Acer truncatum HOM05D000912 ORTHO05D001232 7.1e-08 60.8 72 47.2
BcaB04g18744 Brassica carinata HOM05D000912 ORTHO05D001232 7.1e-08 60.8 84 40.5
BraA08t35056Z Brassica rapa HOM05D000054 ORTHO05D000286 9.2e-08 60.5 52 57.7
Gorai.010G222100 Gossypium raimondii HOM05D000912 ORTHO05D001232 9.2e-08 60.5 74 48.6
Sed0017344 Sechium edule HOM05D000912 ORTHO05D001232 9.2e-08 60.5 72 44.4
Sp3g11140 Schrenkiella parvula HOM05D000912 ORTHO05D001232 1.2e-07 60.1 70 42.9
BcaC01g04048 Brassica carinata HOM05D000912 ORTHO05D001232 1.6e-07 59.7 72 41.7
A03p37920 Brassica napus HOM05D000912 ORTHO05D001232 1.6e-07 59.7 72 41.7
C03p46030 Brassica napus HOM05D000912 ORTHO05D001232 1.6e-07 59.7 72 41.7
BolC3t16875H Brassica oleracea HOM05D000912 ORTHO05D001232 1.6e-07 59.7 72 41.7
BraA03t12946Z Brassica rapa HOM05D000912 ORTHO05D001232 1.6e-07 59.7 72 41.7
ClCG10G000030 Citrullus lanatus HOM05D000912 ORTHO05D001232 1.6e-07 59.7 102 37.3
MSTRG.6589 Avicennia marina HOM05D000912 ORTHO05D001232 2.1e-07 59.3 87 41.4
Lj3g0006194 Lotus japonicus HOM05D000912 ORTHO05D001232 2.1e-07 59.3 97 36.1
BcaB04g21025 Brassica carinata HOM05D000912 ORTHO05D001232 2.7e-07 58.9 67 47.8
COL.COLO4_26805 Corchorus olitorius HOM05D000912 ORTHO05D001232 2.7e-07 58.9 73 47.9
Gohir.D06G189400 Gossypium hirsutum HOM05D000912 ORTHO05D001232 2.7e-07 58.9 74 47.3
CANSAT01G3172 Cannabis sativa HOM05D000912 ORTHO05D001232 3.5e-07 58.5 72 44.4
Duzib192G0163 Durio zibethinus HOM05D000912 ORTHO05D001232 3.5e-07 58.5 74 47.3
Duzib235G0834 Durio zibethinus HOM05D000912 ORTHO05D001232 3.5e-07 58.5 74 48.6
Ah.08g218030 Amaranthus hybridus HOM05D000912 ORTHO05D001232 4.6e-07 58.2 69 49.3
Thhalv10019887m.g Eutrema salsugineum HOM05D000912 ORTHO05D001232 4.6e-07 58.2 72 43.1
Carub.0003s1233 Capsella rubella HOM05D000912 ORTHO05D001232 7.8e-07 57.4 69 42.0
Gohir.A05G116900 Gossypium hirsutum HOM05D000912 ORTHO05D001232 7.8e-07 57.4 72 48.6
Gohir.D05G117800 Gossypium hirsutum HOM05D000912 ORTHO05D001232 7.8e-07 57.4 72 48.6
Gorai.009G121700 Gossypium raimondii HOM05D000912 ORTHO05D001232 7.8e-07 57.4 72 48.6
Medtr7g105680 Medicago truncatula HOM05D023663 ORTHO05D011835 1.0e-06 57.0 87 35.6
PGR102G0551 Punica granatum HOM05D000912 ORTHO05D001232 1.3e-06 56.6 73 45.2
CARHR087520 Cardamine hirsuta HOM05D000912 ORTHO05D001232 1.7e-06 56.2 83 38.6
Glyma.08G226700 Glycine max HOM05D000912 ORTHO05D001232 1.7e-06 56.2 87 39.1
Aa31LG8G230 Aethionema arabicum HOM05D000912 ORTHO05D001232 3.0e-06 55.5 69 44.9
SGA_v2.0_scaffold73G24406 Striga asiatica HOM05D000912 ORTHO05D001232 3.9e-06 55.1 72 44.4
SGA_v2.0_scaffold181G39745 Striga asiatica HOM05D000912 ORTHO05D001232 5.1e-06 54.7 72 44.4
SGA_v2.0_scaffold49G18366 Striga asiatica HOM05D000912 ORTHO05D001232 5.1e-06 54.7 71 47.9
unitig_0.g720 Utricularia gibba HOM05D000912 ORTHO05D001232 5.1e-06 54.7 71 43.7
Glyma.07G000400 Glycine max HOM05D000912 ORTHO05D001232 6.6e-06 54.3 94 36.2
DCAR_013192 Daucus carota HOM05D000912 ORTHO05D001232 8.6e-06 53.9 72 45.8
Hund05659 Selenicereus undatus HOM05D000912 ORTHO05D001232 8.6e-06 53.9 72 40.3
Sc23g0006050 Simmondsia chinensis HOM05D000912 ORTHO05D001232 8.6e-06 53.9 72 41.7
TAR636G0354 Trochodendron aralioides HOM05D000912 ORTHO05D001232 8.6e-06 53.9 72 44.4


User provided reference genes

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