Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G23690 Arabidopsis lyrata HOM05D005885 ORTHO05D008127 3.5e-299 1030.8 497 100.0
AT1G12370 Arabidopsis thaliana HOM05D005885 ORTHO05D008127 4.4e-286 987.3 497 94.8
Carub.0001s1203 Capsella rubella HOM05D005885 ORTHO05D008127 1.7e-282 975.3 497 94.0
Thhalv10007458m.g Eutrema salsugineum HOM05D005885 ORTHO05D008127 3.9e-282 974.2 497 94.2
Sp1g10970 Schrenkiella parvula HOM05D005885 ORTHO05D008127 4.0e-279 964.1 492 93.5
CARHR012660 Cardamine hirsuta HOM05D005885 ORTHO05D008127 3.5e-275 951.0 491 92.9
Aa31LG1G2270 Aethionema arabicum HOM05D005885 ORTHO05D008127 1.6e-267 925.6 497 87.9
A08p32870 Brassica napus HOM05D005885 ORTHO05D008127 3.0e-266 921.4 492 89.6
BraA08t35209Z Brassica rapa HOM05D005885 ORTHO05D008127 7.6e-262 906.7 493 88.4
BolC8t49167H Brassica oleracea HOM05D005885 ORTHO05D008127 1.7e-261 905.6 506 87.0
THA.LOC104809442 Tarenaya hassleriana HOM05D005885 ORTHO05D008127 8.4e-245 850.1 491 82.7
TWI81G1092 Tripterygium wilfordii HOM05D005885 ORTHO05D008127 5.5e-228 794.3 484 76.9
Atru.chr9.1440 Acer truncatum HOM05D005885 ORTHO05D008127 2.1e-227 792.3 486 77.2
Gohir.D03G158300 Gossypium hirsutum HOM05D005885 ORTHO05D008127 1.0e-226 790.0 487 76.8
Gorai.003G166800 Gossypium raimondii HOM05D005885 ORTHO05D008127 1.4e-226 789.6 487 76.8
Potri.001G116800 Populus trichocarpa HOM05D005885 ORTHO05D008127 1.4e-226 789.6 479 77.9
Cpa.g.sc29.82 Carica papaya HOM05D005885 ORTHO05D008127 1.8e-226 789.3 486 76.3
CSS0003633 Camellia sinensis var. sinensis HOM05D005885 ORTHO05D008127 8.8e-226 786.9 494 76.1
Manes.01G072400 Manihot esculenta HOM05D005885 ORTHO05D008127 1.3e-224 783.1 479 76.4
Duzib205G0406 Durio zibethinus HOM05D005885 ORTHO05D008127 1.7e-224 782.7 480 78.5
Thecc.03G262500 Theobroma cacao HOM05D005885 ORTHO05D008127 4.1e-223 778.1 482 76.8
CANSAT21G1830 Cannabis sativa HOM05D005885 ORTHO05D008127 7.7e-222 773.9 483 75.6
arahy.Tifrunner.gnm1.ann1.J86H7Q Arachis hypogaea HOM05D005885 ORTHO05D008127 2.2e-221 772.3 493 73.8
FAN08G2136 Fragaria x ananassa HOM05D005885 ORTHO05D000042 2.2e-221 772.3 484 74.6
PGR031G0042 Punica granatum HOM05D005885 ORTHO05D008127 2.9e-221 771.9 487 73.9
arahy.Tifrunner.gnm1.ann1.FFRS2J Arachis hypogaea HOM05D005885 ORTHO05D008127 5.0e-221 771.2 492 73.4
Cfa012022 Carpinus fangiana HOM05D005885 ORTHO05D008127 5.0e-221 771.2 485 75.1
Eucgr.D01985 Eucalyptus grandis HOM05D005885 ORTHO05D008127 8.5e-221 770.4 485 74.2
FvH4_5g00790 Fragaria vesca HOM05D005885 ORTHO05D008127 8.5e-221 770.4 484 74.4
CsaV3_5G003710 Cucumis sativus L. HOM05D005885 ORTHO05D008127 2.5e-220 768.8 480 75.0
Ciclev10019819m.g Citrus clementina HOM05D005885 ORTHO05D008127 5.5e-220 767.7 483 75.2
Nn4g26386 Nelumbo nucifera HOM05D005885 ORTHO05D008127 9.4e-220 766.9 497 72.0
Lalb_Chr09g0324521 Lupinus albus HOM05D005885 ORTHO05D008127 2.1e-219 765.8 486 74.9
Sabra01G0089600 Salix brachista HOM05D005885 ORTHO05D008127 2.1e-219 765.8 508 72.8
ClCG01G003610 Citrullus lanatus HOM05D005885 ORTHO05D008127 3.6e-219 765.0 498 73.5
CAN.G630.67 Capsicum annuum HOM05D005885 ORTHO05D008127 4.7e-219 764.6 480 75.0
RcHm_v2.0_Chr7g0201341 Rosa chinensis HOM05D005885 ORTHO05D008127 6.1e-219 764.2 477 74.4
MD04G1078900 Malus domestica HOM05D005885 ORTHO05D008127 2.3e-218 762.3 486 74.7
Sed0024879 Sechium edule HOM05D005885 ORTHO05D008127 2.3e-218 762.3 474 75.1
MELO3C005584.2 Cucumis melo HOM05D005885 ORTHO05D008127 3.0e-218 761.9 489 73.4
Sopen08g027900 Solanum pennellii HOM05D005885 ORTHO05D008127 3.9e-218 761.5 480 75.4
Aqoxy7G00633 Aquilegia oxysepala HOM05D005885 ORTHO05D008127 5.1e-218 761.1 477 74.8
PGSC0003DMG400003932 Solanum tuberosum HOM05D005885 ORTHO05D008127 1.5e-217 759.6 483 75.2
Solyc08g079530.3 Solanum lycopersicum HOM05D005885 ORTHO05D008127 1.3e-216 756.5 483 75.2
TPR.G19593 Trifolium pratense HOM05D005885 ORTHO05D008127 1.3e-216 756.5 476 75.0
Hma1.2p1_0138F.1_g063110 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 1.7e-216 756.1 480 75.6
QL12p015122 Quercus lobata HOM05D005885 ORTHO05D008127 2.8e-216 755.4 492 73.4
Glyma.11G029500 Glycine max HOM05D005885 ORTHO05D008127 1.4e-215 753.1 488 72.7
Medtr5g011780 Medicago truncatula HOM05D005885 ORTHO05D008127 1.8e-215 752.7 481 73.2
Lsat_1_v5_gn_6_9740 Lactuca sativa HOM05D005885 ORTHO05D008127 2.4e-215 752.3 485 74.0
Psat2g179680 Pisum sativum HOM05D005885 ORTHO05D008127 2.4e-215 752.3 482 73.2
TAR375G0281 Trochodendron aralioides HOM05D005885 ORTHO05D008127 7.0e-215 750.7 489 71.6
PSO478G5024 Papaver somniferum HOM05D005885 ORTHO05D008127 7.7e-214 747.3 484 72.3
Migut.A00839 Erythranthe guttata HOM05D005885 ORTHO05D008127 2.9e-213 745.3 480 72.9
Oeu040058.2 Olea europaea HOM05D005885 ORTHO05D008127 3.8e-213 745.0 498 71.3
Nitab4.5_0010237g0040 Nicotiana tabacum HOM05D005885 ORTHO05D008127 6.5e-213 744.2 476 74.6
FAN04G1127 Fragaria x ananassa HOM05D005885 ORTHO05D008127 1.9e-212 742.7 504 69.6
VMungo1215G0841 Vigna mungo HOM05D005885 ORTHO05D008127 4.2e-212 741.5 488 71.3
MSTRG.25552 Avicennia marina HOM05D005885 ORTHO05D008127 3.6e-211 738.4 481 72.8
Lj2g0010887 Lotus japonicus HOM05D005885 ORTHO05D008127 3.6e-211 738.4 483 72.3
CiPaw.11G147000 Carya illinoinensis HOM05D005885 ORTHO05D008127 8.0e-211 737.3 449 78.2
ECA233G5871 Erigeron canadensis HOM05D005885 ORTHO05D008127 3.3e-209 731.9 478 72.4
Nitab4.5_0003534g0090 Nicotiana tabacum HOM05D005885 ORTHO05D008127 5.7e-209 731.1 537 67.4
GSVIVG01004905001 Vitis vinifera HOM05D005885 ORTHO05D008127 6.3e-208 727.6 531 67.8
SalBow6G1575 Salvia bowleyana HOM05D005885 ORTHO05D008127 7.7e-206 720.7 478 71.5
Prupe.5G080300 Prunus persica HOM05D005885 ORTHO05D008127 2.9e-205 718.8 486 71.4
AUR62017386 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.9e-204 716.1 513 67.1
COL.COLO4_23868 Corchorus olitorius HOM05D005885 ORTHO05D008127 3.6e-203 711.8 465 73.8
Haze_09046 Corylus avellana HOM05D005885 ORTHO05D008127 3.6e-203 711.8 509 68.6
CDE12G0141 Ceratophyllum demersum HOM05D005885 ORTHO05D008127 1.2e-201 706.8 473 68.1
C08p15390 Brassica napus HOM05D005885 ORTHO05D008127 3.4e-201 705.3 383 88.5
ATR0810G103 Amborella trichopoda HOM05D005885 ORTHO05D008127 5.7e-201 704.5 480 67.7
HanXRQChr07g0188641 Helianthus annuus HOM05D005885 ORTHO05D008127 6.3e-200 701.0 444 74.5
unitig_744.g24322 Utricularia gibba HOM05D005885 ORTHO05D008127 8.3e-200 700.7 513 66.5
Dinv37758 Davidia involucrata HOM05D005885 ORTHO05D008127 3.1e-199 698.7 431 77.3
EL10Ac5g12625 Beta vulgaris HOM05D005885 ORTHO05D008127 2.1e-195 686.0 560 61.6
PSO782G2305 Papaver somniferum HOM05D005885 ORTHO05D008127 4.7e-195 684.9 498 66.3
SGA_v2.0_scaffold120G32808 Striga asiatica HOM05D005885 ORTHO05D008127 1.0e-194 683.7 517 65.4
ECA233G1449 Erigeron canadensis HOM05D005885 ORTHO05D008127 1.8e-194 682.9 447 71.1
Hund11561 Selenicereus undatus HOM05D005885 ORTHO05D008127 1.7e-192 676.4 478 69.0
Rhsim07G0193500 Rhododendron simsii HOM05D005885 ORTHO05D008127 8.3e-192 674.1 498 66.9
Ca_06688_v3 Cicer arietinum L. HOM05D005885 ORTHO05D008127 2.4e-191 672.5 483 67.1
FAN18G2769 Fragaria x ananassa HOM05D005885 ORTHO05D000042 1.0e-186 657.1 490 65.9
AagrBONN_evm.TU.Sc2ySwM_117.35 Anthoceros agrestis HOM05D005885 ORTHO05D008127 1.7e-184 649.8 474 63.1
MBI04_g35270_MAGBIO Magnolia biondii HOM05D005885 ORTHO05D008127 3.2e-183 645.6 497 63.6
vmacro00223 Vaccinium macrocarpon HOM05D005885 ORTHO05D008127 1.2e-182 643.7 506 63.6
DCAR_008454 Daucus carota HOM05D005885 ORTHO05D008127 3.5e-182 642.1 500 65.2
SMO137G0163 Selaginella moellendorffii HOM05D005885 ORTHO05D008127 3.3e-180 635.6 481 61.7
Mapoly0149s0026 Marchantia polymorpha HOM05D005885 ORTHO05D008127 7.3e-180 634.4 473 63.0
CBR_g17934 Chara braunii HOM05D005885 ORTHO05D008127 8.9e-178 627.5 494 59.9
BcaB03g13192 Brassica carinata HOM05D005885 ORTHO05D008127 4.1e-175 618.6 335 89.6
Lj8C254T7 Lonicera japonica HOM05D005885 ORTHO05D008127 3.3e-172 609.0 385 77.1
Pp3c5_3400 Physcomitrium patens HOM05D005885 ORTHO05D008127 1.6e-171 606.7 477 61.0
Gohir.A03G011600 Gossypium hirsutum HOM05D005885 ORTHO05D008127 2.8e-171 605.9 381 75.3
Hma1.2p1_0138F.1_g063120 Hydrangea macrophylla HOM05D005885 ORTHO05D008127 2.0e-169 599.7 481 63.8
Peaxi162Scf00271g00133 Petunia axillaris HOM05D005885 ORTHO05D008127 4.9e-168 595.1 482 63.5
Cc08_g13300 Coffea canephora HOM05D005885 ORTHO05D008127 1.9e-164 583.2 383 72.1
Sc07g0009420 Simmondsia chinensis HOM05D005885 ORTHO05D008127 3.1e-162 575.9 384 71.4
Phvul.002G059800 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 5.8e-161 571.6 393 69.5
Cre12.g533000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D008127 5.6e-156 555.1 477 56.8
MCO01G340 Micromonas commoda HOM05D005885 ORTHO05D008127 5.6e-156 555.1 478 56.3
FAN13G1573 Fragaria x ananassa HOM05D005885 ORTHO05D008127 2.5e-148 529.6 394 65.0
Ah.02g116190 Amaranthus hybridus HOM05D005885 ORTHO05D008127 2.9e-144 516.2 358 69.0
MCO16G424 Micromonas commoda HOM05D005885 ORTHO05D008127 4.0e-138 495.7 477 54.3
Actinidia14469 Actinidia chinensis HOM05D005885 ORTHO05D008127 3.1e-130 469.5 349 66.8
Zm00001eb026960 Zea mays HOM05D005885 ORTHO05D008127 4.0e-130 469.2 385 60.0
Haze_26274 Corylus avellana HOM05D005885 ORTHO05D008127 2.1e-126 456.8 453 50.8
PRCOL_00005710 Prasinoderma coloniale HOM05D005885 ORTHO05D008127 4.6e-126 455.7 472 49.8
TAR375G0948 Trochodendron aralioides HOM05D005885 ORTHO05D008127 5.0e-120 435.6 256 78.1
Actinidia02084 Actinidia chinensis HOM05D005885 ORTHO05D008127 2.5e-119 433.3 364 60.7
HPP92_020977 Vanilla planifolia HOM05D005885 ORTHO05D008127 5.1e-117 425.6 289 68.5
Os10g0167600 Oryza sativa ssp. japonica HOM05D005885 ORTHO05D008127 7.4e-116 421.8 347 58.8
SEGI_07453 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.4e-111 407.5 283 66.8
Glyma.01G212300 Glycine max HOM05D005885 ORTHO05D008127 1.9e-87 327.4 188 77.7
AUR62010516 Chenopodium quinoa HOM05D005885 ORTHO05D008127 1.0e-69 268.5 155 80.6
MCO05G034 Micromonas commoda HOM05D005885 ORTHO05D268017 1.3e-67 261.5 470 35.3
Lj8A254T79 Lonicera japonica HOM05D005885 ORTHO05D008127 1.4e-45 188.3 95 85.3
SEGI_03642 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 3.4e-44 183.7 96 82.3
Phvul.002G151001 Phaseolus vulgaris HOM05D005885 ORTHO05D008127 4.6e-33 146.7 93 69.9
Ah.02g116200 Amaranthus hybridus HOM05D005885 ORTHO05D008127 1.6e-30 138.3 74 85.1
Cc08_g13290 Coffea canephora HOM05D005885 ORTHO05D008127 9.0e-29 132.5 70 84.3
Cre02.g118000 Chlamydomonas reinhardtii HOM05D005885 ORTHO05D044175 1.2e-28 132.1 212 35.8
TAR375G0547 Trochodendron aralioides HOM05D005885 ORTHO05D008127 2.6e-28 131.0 95 67.4
QL09p013714 Quercus lobata HOM05D005885 ORTHO05D008127 3.4e-28 130.6 128 53.9
PRCOL_00007238 Prasinoderma coloniale HOM05D005885 ORTHO05D044175 6.7e-24 116.3 199 35.2
SEGI_07050 Sequoiadendron giganteum HOM05D005885 ORTHO05D008127 1.3e-22 112.1 103 54.4
HanXRQChr10g0306201 Helianthus annuus HOM05D005885 ORTHO05D008127 4.0e-21 107.1 70 72.9
COL.COLO4_29220 Corchorus olitorius HOM05D005885 ORTHO05D008127 5.5e-18 96.7 54 87.0
BolC1t01666H Brassica oleracea HOM05D005885 ORTHO05D023940 1.1e-10 72.4 50 66.0
BolC2t10740H Brassica oleracea HOM05D005885 ORTHO05D023940 4.2e-10 70.5 49 67.3
RcHm_v2.0_Chr7g0201231 Rosa chinensis HOM05D005885 ORTHO05D342624 2.1e-09 68.2 48 64.6
BolC3t14965H Brassica oleracea HOM05D001034 ORTHO05D023940 1.1e-07 62.4 44 68.2
BcaB03g13191 Brassica carinata HOM05D005885 ORTHO05D096366 2.5e-07 61.2 42 69.0


User provided reference genes

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