Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G14900 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.2e-239 832.8 439 100.0
AT1G05140 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 1.0e-222 776.5 442 93.9
CARHR004610 Cardamine hirsuta HOM05D005300 ORTHO05D006622 3.6e-215 751.5 440 90.5
Carub.0001s0441 Capsella rubella HOM05D005300 ORTHO05D006622 1.9e-211 739.2 449 88.9
Sp1g03990 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.2e-207 724.2 452 86.9
SpUn0024_0150 Schrenkiella parvula HOM05D005300 ORTHO05D006622 6.2e-207 724.2 452 86.9
BolC5t29115H Brassica oleracea HOM05D005300 ORTHO05D006622 1.1e-195 686.8 445 82.7
BraA10t42640Z Brassica rapa HOM05D005300 ORTHO05D006622 1.4e-195 686.4 445 82.9
A10p03670 Brassica napus HOM05D005300 ORTHO05D006622 9.2e-195 683.7 445 82.9
Carub.0004s1382 Capsella rubella HOM05D005300 ORTHO05D006622 5.6e-192 674.5 451 80.0
CARHR126300 Cardamine hirsuta HOM05D005300 ORTHO05D006622 4.0e-190 668.3 451 79.6
Sp4g14840 Schrenkiella parvula HOM05D005300 ORTHO05D006622 4.4e-189 664.8 451 79.4
Thhalv10017977m.g Eutrema salsugineum HOM05D005300 ORTHO05D006622 5.8e-189 664.5 451 79.2
THA.LOC104826148 Tarenaya hassleriana HOM05D005300 ORTHO05D006622 5.8e-189 664.5 451 78.7
AL4G27860 Arabidopsis lyrata HOM05D005300 ORTHO05D006622 1.9e-187 659.4 451 78.7
Aa31LG1G19610 Aethionema arabicum HOM05D005300 ORTHO05D006622 1.2e-181 640.2 448 78.6
A05p13230 Brassica napus HOM05D005300 ORTHO05D006622 6.0e-178 627.9 448 76.1
BcaC02g11315 Brassica carinata HOM05D005300 ORTHO05D006622 3.0e-177 625.5 451 75.2
C04p17170 Brassica napus HOM05D005300 ORTHO05D006622 3.0e-177 625.5 451 75.2
BolC4t23267H Brassica oleracea HOM05D005300 ORTHO05D006622 3.0e-177 625.5 451 75.2
BraA05t20264Z Brassica rapa HOM05D005300 ORTHO05D006622 3.0e-177 625.5 448 76.1
BcaB02g10466 Brassica carinata HOM05D005300 ORTHO05D006622 3.3e-176 622.1 444 75.2
C05p03380 Brassica napus HOM05D005300 ORTHO05D006622 3.8e-172 608.6 363 87.9
Prupe.3G216500 Prunus persica HOM05D005300 ORTHO05D006622 1.5e-168 596.7 455 70.5
Atru.chr6.3194 Acer truncatum HOM05D005300 ORTHO05D006622 4.3e-168 595.1 458 71.0
AT2G32480 Arabidopsis thaliana HOM05D005300 ORTHO05D006622 5.6e-168 594.7 451 73.4
RcHm_v2.0_Chr2g0159081 Rosa chinensis HOM05D005300 ORTHO05D006622 1.3e-167 593.6 455 70.8
CSS0027646 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 2.1e-167 592.8 453 70.0
FAN02G3120 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.4e-166 589.3 448 70.1
PGR042G1729 Punica granatum HOM05D005300 ORTHO05D006622 3.1e-166 589.0 454 69.2
Ciclev10015229m.g Citrus clementina HOM05D005300 ORTHO05D006622 1.5e-165 586.6 450 69.1
Manes.12G074100 Manihot esculenta HOM05D005300 ORTHO05D006622 1.5e-165 586.6 452 69.7
CiPaw.04G115200 Carya illinoinensis HOM05D005300 ORTHO05D006622 2.0e-165 586.3 458 69.2
COL.COLO4_11250 Corchorus olitorius HOM05D005300 ORTHO05D006622 2.0e-165 586.3 445 70.6
FAN05G3018 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.6e-165 585.9 454 69.6
Duzib251G0812 Durio zibethinus HOM05D005300 ORTHO05D006622 3.4e-165 585.5 437 70.9
Gohir.D12G176700 Gossypium hirsutum HOM05D005300 ORTHO05D006622 3.4e-165 585.5 435 71.5
Cpa.g.sc87.86 Carica papaya HOM05D005300 ORTHO05D006622 4.5e-165 585.1 439 70.6
Gorai.008G189100 Gossypium raimondii HOM05D005300 ORTHO05D006622 4.5e-165 585.1 435 71.5
Lalb_Chr03g0028691 Lupinus albus HOM05D005300 ORTHO05D006622 5.8e-165 584.7 456 69.5
CANSAT64G1405 Cannabis sativa HOM05D005300 ORTHO05D006622 7.6e-165 584.3 445 70.3
Gohir.A12G174000 Gossypium hirsutum HOM05D005300 ORTHO05D006622 9.9e-165 583.9 435 70.8
arahy.Tifrunner.gnm1.ann1.B9TUKK Arachis hypogaea HOM05D005300 ORTHO05D006622 1.3e-164 583.6 457 69.1
arahy.Tifrunner.gnm1.ann1.SJMT99 Arachis hypogaea HOM05D005300 ORTHO05D006622 1.3e-164 583.6 458 69.2
FvH4_6g43160 Fragaria vesca HOM05D005300 ORTHO05D006622 2.2e-164 582.8 454 69.4
TAR624G0116 Trochodendron aralioides HOM05D005300 ORTHO05D006622 2.2e-164 582.8 463 67.8
Sopen07g025910 Solanum pennellii HOM05D005300 ORTHO05D006622 1.4e-163 580.1 448 68.5
Solyc07g052290.1 Solanum lycopersicum HOM05D005300 ORTHO05D006622 2.5e-163 579.3 448 68.3
Glyma.12G098200 Glycine max HOM05D005300 ORTHO05D006622 3.2e-163 578.9 451 69.2
Thecc.02G365500 Theobroma cacao HOM05D005300 ORTHO05D006622 4.2e-163 578.6 450 69.8
Nn1g03500 Nelumbo nucifera HOM05D005300 ORTHO05D006622 5.5e-163 578.2 451 67.6
TWI18G0506 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 5.5e-163 578.2 458 68.8
PGSC0003DMG400028948 Solanum tuberosum HOM05D005300 ORTHO05D006622 7.1e-163 577.8 448 68.1
Medtr4g048590 Medicago truncatula HOM05D005300 ORTHO05D006622 2.1e-162 576.2 449 69.5
Lj3g0003317 Lotus japonicus HOM05D005300 ORTHO05D006622 2.7e-162 575.9 454 68.7
MD09G1110000 Malus domestica HOM05D005300 ORTHO05D006622 2.7e-162 575.9 362 80.4
TPR.G4668 Trifolium pratense HOM05D005300 ORTHO05D006622 4.6e-162 575.1 446 69.5
Oeu007114.1 Olea europaea HOM05D005300 ORTHO05D006622 6.0e-162 574.7 447 68.7
TAR626G0150 Trochodendron aralioides HOM05D005300 ORTHO05D006622 7.9e-162 574.3 411 72.3
Glyma.06G306700 Glycine max HOM05D005300 ORTHO05D006622 1.0e-161 573.9 446 68.8
CAN.G1296.1 Capsicum annuum HOM05D005300 ORTHO05D006622 1.3e-161 573.5 445 68.8
Lj1P766T34 Lonicera japonica HOM05D005300 ORTHO05D006622 1.3e-161 573.5 451 67.0
Potri.014G154000 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.8e-161 573.2 452 70.1
Psat0s4267g0040 Pisum sativum HOM05D005300 ORTHO05D006622 2.3e-161 572.8 451 68.7
TWI36G1224 Tripterygium wilfordii HOM05D005300 ORTHO05D006622 2.3e-161 572.8 460 67.4
Sabra02G0174700 Salix brachista HOM05D005300 ORTHO05D006622 1.9e-160 569.7 451 69.2
Aqoxy1G02098 Aquilegia oxysepala HOM05D005300 ORTHO05D006622 3.3e-160 568.9 451 67.4
Ca_03278_v3 Cicer arietinum L. HOM05D005300 ORTHO05D006622 4.3e-160 568.5 448 68.3
Peaxi162Scf00007g00072 Petunia axillaris HOM05D005300 ORTHO05D006622 4.3e-160 568.5 417 71.2
QL08p032961 Quercus lobata HOM05D005300 ORTHO05D006622 5.6e-160 568.2 453 66.4
Sabra14G0116500 Salix brachista HOM05D005300 ORTHO05D006622 9.6e-160 567.4 451 68.5
Phvul.011G103000 Phaseolus vulgaris HOM05D005300 ORTHO05D006622 1.3e-159 567.0 442 69.0
MELO3C019273.2 Cucumis melo HOM05D005300 ORTHO05D006622 1.6e-159 566.6 405 72.6
MSTRG.14149 Avicennia marina HOM05D005300 ORTHO05D006622 2.8e-159 565.8 451 67.0
EL10Ac4g10369 Beta vulgaris HOM05D005300 ORTHO05D006622 3.7e-159 565.5 451 68.7
CSS0024072 Camellia sinensis var. sinensis HOM05D005300 ORTHO05D006622 6.2e-159 564.7 450 67.6
ClCG02G008830 Citrullus lanatus HOM05D005300 ORTHO05D006622 8.2e-159 564.3 439 68.1
Potri.002G228600 Populus trichocarpa HOM05D005300 ORTHO05D006622 1.1e-158 563.9 454 68.5
ECA240G1660 Erigeron canadensis HOM05D005300 ORTHO05D006622 5.3e-158 561.6 433 68.8
Sed0016669 Sechium edule HOM05D005300 ORTHO05D006622 3.8e-156 555.4 452 68.1
Sc21g0001390 Simmondsia chinensis HOM05D005300 ORTHO05D006622 3.8e-156 555.4 448 66.1
Migut.H01227 Erythranthe guttata HOM05D005300 ORTHO05D006622 6.5e-156 554.7 452 64.6
PSO675G7879 Papaver somniferum HOM05D005300 ORTHO05D006622 6.5e-156 554.7 450 65.1
Eucgr.A01121 Eucalyptus grandis HOM05D005300 ORTHO05D006622 8.4e-156 554.3 457 67.0
SalBow1G7639 Salvia bowleyana HOM05D005300 ORTHO05D006622 8.4e-156 554.3 445 67.0
AUR62000009 Chenopodium quinoa HOM05D005300 ORTHO05D006622 1.4e-155 553.5 461 66.4
Cc05_g04360 Coffea canephora HOM05D005300 ORTHO05D006622 3.2e-155 552.4 450 66.7
Lsat_1_v5_gn_9_107520 Lactuca sativa HOM05D005300 ORTHO05D006622 1.2e-154 550.4 433 68.1
AUR62019178 Chenopodium quinoa HOM05D005300 ORTHO05D006622 7.9e-154 547.7 451 66.7
AUR62019179 Chenopodium quinoa HOM05D005300 ORTHO05D006622 7.9e-154 547.7 451 66.7
PSO541G4463 Papaver somniferum HOM05D005300 ORTHO05D006622 1.0e-153 547.4 450 64.0
FAN09G2150 Fragaria x ananassa HOM05D005300 ORTHO05D006622 2.3e-153 546.2 432 68.1
HanXRQChr10g0295521 Helianthus annuus HOM05D005300 ORTHO05D006622 4.3e-152 542.0 432 66.4
Rhsim04G0052800 Rhododendron simsii HOM05D005300 ORTHO05D006622 7.4e-152 541.2 444 64.6
DCAR_012943 Daucus carota HOM05D005300 ORTHO05D006622 2.8e-151 539.3 441 66.0
SGA_v2.0_scaffold159G37576 Striga asiatica HOM05D005300 ORTHO05D006622 8.2e-151 537.7 448 64.7
Dinv39717 Davidia involucrata HOM05D005300 ORTHO05D006622 5.0e-148 528.5 341 76.8
Lalb_Chr19g0135951 Lupinus albus HOM05D005300 ORTHO05D006622 1.0e-145 520.8 362 73.5
Actinidia08387 Actinidia chinensis HOM05D005300 ORTHO05D006622 1.3e-140 503.8 402 66.9
CiPaw.03G159400 Carya illinoinensis HOM05D005300 ORTHO05D006622 6.1e-138 495.0 456 60.3
BcaC05g24426 Brassica carinata HOM05D005300 ORTHO05D006622 9.1e-134 481.1 278 88.8
ATR0794G038 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.0e-132 477.6 379 67.5
Nitab4.5_0009179g0010 Nicotiana tabacum HOM05D005300 ORTHO05D006622 1.2e-130 470.7 320 75.3
CsaV3_2G034890 Cucumis sativus L. HOM05D005300 ORTHO05D006622 7.0e-126 454.9 307 75.2
GSVIVG01030436001 Vitis vinifera HOM05D005300 ORTHO05D006622 5.9e-125 451.8 455 56.7
MBI02_g21883_MAGBIO Magnolia biondii HOM05D005300 ORTHO05D006622 3.2e-123 446.0 311 72.7
Zm00001eb219720 Zea mays HOM05D005300 ORTHO05D006622 1.2e-120 437.6 371 62.0
Dinv05423 Davidia involucrata HOM05D005300 ORTHO05D006622 2.0e-120 436.8 289 75.4
Zm00001eb049010 Zea mays HOM05D005300 ORTHO05D006622 3.7e-119 432.6 373 61.7
Os03g0579000 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D006622 1.2e-117 427.6 432 55.6
CDE12G0066 Ceratophyllum demersum HOM05D005300 ORTHO05D006622 2.9e-116 422.9 301 70.8
Mapoly0064s0026 Marchantia polymorpha HOM05D005300 ORTHO05D006622 5.5e-115 418.7 372 57.3
Nitab4.5_0002137g0020 Nicotiana tabacum HOM05D005300 ORTHO05D006622 5.5e-115 418.7 282 75.2
AagrBONN_evm.TU.Sc2ySwM_344.3933 Anthoceros agrestis HOM05D005300 ORTHO05D006622 2.0e-112 410.2 371 57.4
SMO351G0125 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.7e-111 406.0 369 57.7
Haze_12853 Corylus avellana HOM05D005300 ORTHO05D006622 3.7e-103 379.4 281 70.5
Pp3c9_3170 Physcomitrium patens HOM05D005300 ORTHO05D006622 4.1e-102 375.9 361 56.5
CDE01G0785 Ceratophyllum demersum HOM05D001211 ORTHO05D001084 2.9e-100 369.8 297 64.3
Pp3c19_19130 Physcomitrium patens HOM05D005300 ORTHO05D006622 3.9e-100 369.4 364 55.8
CBR_g50915 Chara braunii HOM05D005300 ORTHO05D006622 2.0e-96 357.1 383 53.0
Pp3c18_14380 Physcomitrium patens HOM05D005300 ORTHO05D006622 1.3e-95 354.4 377 53.1
PRCOL_00005585 Prasinoderma coloniale HOM05D005300 ORTHO05D006622 9.2e-94 348.2 355 52.4
SEGI_01159 Sequoiadendron giganteum HOM05D005300 ORTHO05D006622 1.3e-92 344.4 327 57.8
BcaB06g28596 Brassica carinata HOM05D005300 ORTHO05D006622 3.6e-90 336.3 248 72.2
MCO09G462 Micromonas commoda HOM05D005300 ORTHO05D006622 1.9e-86 323.9 368 52.2
Cre03.g144164 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D006622 2.5e-83 313.5 383 46.0
BcaC02g07921 Brassica carinata HOM05D005300 ORTHO05D006622 9.2e-78 295.0 442 47.5
C04p61940 Brassica napus HOM05D005300 ORTHO05D006622 2.6e-64 250.4 439 42.6
A04p24950 Brassica napus HOM05D005300 ORTHO05D006622 6.7e-52 209.1 222 57.7
HPP92_012410 Vanilla planifolia HOM05D005300 ORTHO05D006622 1.9e-51 207.6 150 74.0
ATR0069G018 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.2e-38 163.7 164 51.8
ATR0681G167 Amborella trichopoda HOM05D005300 ORTHO05D006622 6.7e-36 156.0 112 68.8
Zm00001eb417680 Zea mays HOM05D005300 ORTHO05D006622 1.1e-33 148.7 163 50.3
ATR0069G030 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.2e-29 135.2 83 74.7
ATR0753G011 Amborella trichopoda HOM05D005300 ORTHO05D006622 3.9e-28 130.2 126 54.8
ATR0820G169 Amborella trichopoda HOM05D005300 ORTHO05D006622 2.5e-27 127.5 171 42.7
unitig_749.g13943 Utricularia gibba HOM05D005300 ORTHO05D006622 6.5e-23 112.8 73 78.1
ATR0775G001 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.4e-20 105.1 87 69.0
Os05g0388025 Oryza sativa ssp. japonica HOM05D005300 ORTHO05D299932 3.8e-15 87.0 75 53.3
SMO163G0076 Selaginella moellendorffii HOM05D005300 ORTHO05D006622 3.8e-15 87.0 102 49.0
Cre17.g730100 Chlamydomonas reinhardtii HOM05D005300 ORTHO05D146069 2.8e-10 70.9 186 33.9
BolC4t27673H Brassica oleracea HOM05D005300 ORTHO05D006622 2.7e-08 64.3 136 39.7
ATR0681G370 Amborella trichopoda HOM05D005300 ORTHO05D006622 1.3e-07 62.0 54 64.8


User provided reference genes

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