Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 1.9e-231 805.4 388 100.0
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 2.4e-226 788.5 388 98.7
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 4.6e-222 774.2 389 95.9
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.3e-221 772.7 389 95.9
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.9e-221 771.2 389 95.4
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 1.5e-220 769.2 393 94.7
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.6e-214 749.2 386 93.8
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 2.1e-214 748.8 393 92.6
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 4.6e-214 747.7 392 92.6
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 1.6e-211 739.2 394 91.6
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 1.6e-211 739.2 394 91.6
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 8.1e-211 736.9 396 90.9
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 2.4e-210 735.3 392 92.6
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 1.2e-209 733.0 392 92.3
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 1.2e-209 733.0 391 92.1
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 3.4e-209 731.5 391 91.8
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 5.6e-204 714.1 389 88.7
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.1e-203 710.3 373 91.4
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 1.2e-201 706.4 396 89.6
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 2.9e-200 701.8 389 87.1
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 1.8e-194 682.6 368 91.6
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 1.2e-193 679.9 369 91.6
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 2.0e-185 652.5 384 82.8
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 1.4e-183 646.4 386 81.9
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 3.2e-183 645.2 379 83.4
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 4.2e-183 644.8 393 79.4
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 5.5e-183 644.4 396 79.0
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 9.4e-183 643.7 393 78.9
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 1.6e-182 642.9 397 79.1
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 6.1e-182 641.0 393 79.6
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.4e-181 639.8 391 80.1
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 3.0e-181 638.6 389 79.9
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 6.7e-181 637.5 396 80.1
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 8.8e-181 637.1 351 86.0
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 8.8e-181 637.1 389 80.2
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.1e-180 636.7 383 81.5
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.5e-180 636.3 388 79.6
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 1.5e-180 636.3 389 78.9
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 2.5e-180 635.6 402 78.4
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 2.5e-180 635.6 392 79.6
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 2.5e-180 635.6 360 85.0
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 3.3e-180 635.2 396 79.3
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 4.3e-180 634.8 388 79.4
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 7.4e-180 634.0 351 86.0
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 9.7e-180 633.6 353 86.1
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 1.7e-179 632.9 343 87.8
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 1.7e-179 632.9 345 87.2
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 2.2e-179 632.5 391 79.8
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 2.2e-179 632.5 400 77.2
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 3.7e-179 631.7 393 78.6
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 3.7e-179 631.7 389 80.5
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 4.8e-179 631.3 355 84.5
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 6.3e-179 630.9 391 79.0
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 6.3e-179 630.9 391 79.3
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 8.2e-179 630.6 394 78.4
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.8e-178 629.4 391 78.8
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 1.8e-178 629.4 396 78.8
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 1.8e-178 629.4 384 78.6
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 2.4e-178 629.0 370 80.0
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.4e-178 629.0 397 77.8
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.4e-178 629.0 397 77.6
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 3.1e-178 628.6 385 79.5
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 6.9e-178 627.5 390 78.7
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 9.1e-178 627.1 391 78.0
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.0e-177 625.9 393 77.6
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 2.0e-177 625.9 349 84.8
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 2.6e-177 625.5 386 78.5
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 2.6e-177 625.5 393 78.9
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 3.4e-177 625.2 367 83.1
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.4e-177 625.2 390 77.4
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 5.9e-177 624.4 391 78.0
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 7.7e-177 624.0 380 79.7
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 1.3e-176 623.2 387 78.6
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.3e-176 623.2 340 86.2
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 3.2e-175 618.6 404 75.0
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 7.2e-175 617.5 338 86.7
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 3.6e-174 615.1 365 80.3
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 3.6e-174 615.1 394 76.6
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 4.7e-174 614.8 389 76.3
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 7.9e-174 614.0 386 78.0
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 1.0e-173 613.6 393 76.3
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 3.9e-173 611.7 356 80.9
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 5.1e-173 611.3 389 76.6
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 5.1e-173 611.3 397 74.6
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 5.1e-173 611.3 373 78.6
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 8.8e-173 610.5 341 84.5
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 1.1e-172 610.1 370 79.5
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 2.6e-172 609.0 393 76.1
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 2.6e-172 609.0 362 82.0
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 3.3e-172 608.6 391 77.0
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 4.4e-172 608.2 342 85.4
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 4.8e-171 604.7 340 85.6
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.2e-169 600.1 422 71.1
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.6e-169 599.0 403 74.2
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 3.4e-169 598.6 427 71.4
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 4.5e-169 598.2 340 84.1
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 5.9e-169 597.8 405 73.1
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 7.7e-169 597.4 397 74.3
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 1.0e-168 597.0 396 74.5
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 1.3e-168 596.7 376 77.7
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 2.9e-168 595.5 358 79.9
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 3.8e-168 595.1 339 82.3
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-167 592.8 388 74.0
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 5.5e-167 591.3 301 90.7
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 1.8e-165 586.3 308 88.6
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 7.4e-164 580.9 361 80.1
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 3.7e-163 578.6 317 85.8
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 3.8e-160 568.5 371 75.2
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 3.2e-159 565.5 361 77.3
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 2.6e-156 555.8 398 70.6
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 2.6e-156 555.8 393 72.8
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 8.2e-155 550.8 370 71.6
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 3.1e-154 548.9 347 76.4
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 3.1e-154 548.9 373 74.3
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 5.9e-153 544.7 497 58.6
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.9e-152 542.3 341 73.9
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 1.5e-151 540.0 550 54.2
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 1.9e-151 539.7 367 71.1
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 1.8e-149 533.1 549 55.4
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.2e-148 530.4 337 73.9
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 4.4e-148 528.5 303 79.9
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 3.8e-144 515.4 243 97.9
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 4.7e-134 481.9 364 65.7
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.3e-131 473.8 313 73.2
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 4.3e-127 458.8 397 62.0
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 5.4e-122 441.8 345 61.2
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 7.0e-122 441.4 307 66.4
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 9.9e-116 421.0 289 73.4
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 4.3e-111 405.6 254 77.6
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 8.1e-110 401.4 220 86.4
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 5.4e-106 388.7 212 87.3
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 6.6e-104 381.7 236 80.9
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 6.2e-102 375.2 316 58.2
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 3.1e-101 372.9 339 54.3
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.5e-95 354.0 261 69.3
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.2e-90 336.3 205 77.1
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 4.6e-89 332.4 288 54.2
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 1.3e-67 261.2 319 42.6
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.2e-66 256.5 321 42.7
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 3.2e-66 256.5 310 44.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 1.2e-65 254.6 340 39.7
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.2e-65 254.6 127 92.1
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.7e-65 253.4 387 37.7
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.4e-60 236.5 310 40.6
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 4.8e-54 216.1 179 63.1
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 4.8e-54 216.1 334 38.0
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 2.9e-51 206.8 258 41.1
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 7.4e-47 192.2 114 82.5
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 7.7e-44 182.2 164 58.5
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 7.5e-31 139.0 115 66.1
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 4.5e-28 129.8 92 70.7
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.6e-23 114.0 56 87.5
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 7.5e-23 112.5 158 42.4
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 1.0e-19 102.1 62 80.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 6.6e-19 99.4 165 44.2
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 2.6e-15 87.4 93 55.9
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 9.8e-15 85.5 49 77.6
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 5.0e-11 73.2 33 87.9
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 6.2e-09 66.2 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 5.8e-07 59.7 31 80.6


User provided reference genes

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