Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p17910 Brassica napus HOM05D004410 ORTHO05D006134 2.3e-152 542.3 308 100.0
A03p12910 Brassica napus HOM05D004410 ORTHO05D006134 2.4e-141 505.8 289 99.7
C03p15070 Brassica napus HOM05D004410 ORTHO05D006134 2.5e-138 495.7 289 92.7
BolC3t13949H Brassica oleracea HOM05D004410 ORTHO05D006134 2.5e-138 495.7 289 92.7
Sp6g19010 Schrenkiella parvula HOM05D004410 ORTHO05D006134 2.2e-134 482.6 289 90.0
Thhalv10014295m.g Eutrema salsugineum HOM05D004410 ORTHO05D006134 3.7e-134 481.9 289 86.9
AL8G33250 Arabidopsis lyrata HOM05D004410 ORTHO05D006134 2.3e-128 462.6 290 83.1
Aa31sc36G40 Aethionema arabicum HOM05D004410 ORTHO05D006134 4.4e-127 458.4 293 81.9
Carub.0008s1778 Capsella rubella HOM05D004410 ORTHO05D006134 7.5e-127 457.6 290 82.1
BcaB05g22331 Brassica carinata HOM05D004410 ORTHO05D006134 3.5e-124 448.7 289 83.7
CARHR271080 Cardamine hirsuta HOM05D004410 ORTHO05D006134 3.5e-124 448.7 292 80.1
AT5G57280 Arabidopsis thaliana HOM05D004410 ORTHO05D006134 4.6e-124 448.4 290 80.7
BraA03t10599Z Brassica rapa HOM05D004410 ORTHO05D006134 8.6e-123 444.1 257 99.6
THA.LOC104817784 Tarenaya hassleriana HOM05D004410 ORTHO05D006134 1.2e-119 433.7 294 76.9
Cpa.g.sc95.31 Carica papaya HOM05D004410 ORTHO05D006134 1.4e-117 426.8 291 75.3
Eucgr.L02823 Eucalyptus grandis HOM05D004410 ORTHO05D006134 2.3e-115 419.5 291 73.5
Eucgr.C02260 Eucalyptus grandis HOM05D004410 ORTHO05D006134 3.9e-115 418.7 291 73.2
Gorai.004G025800 Gossypium raimondii HOM05D004410 ORTHO05D006134 3.9e-115 418.7 292 74.7
Thecc.09G180400 Theobroma cacao HOM05D004410 ORTHO05D006134 5.1e-115 418.3 292 74.7
Gohir.D08G028700 Gossypium hirsutum HOM05D004410 ORTHO05D006134 2.5e-114 416.0 292 74.0
Duzib170G0185 Durio zibethinus HOM05D004410 ORTHO05D006134 3.3e-114 415.6 292 74.0
TAR626G0361 Trochodendron aralioides HOM05D004410 ORTHO05D006134 5.6e-114 414.8 294 74.1
Potri.001G338700 Populus trichocarpa HOM05D004410 ORTHO05D006134 7.3e-114 414.5 291 71.8
Ciclev10009088m.g Citrus clementina HOM05D004410 ORTHO05D006134 1.2e-113 413.7 293 72.4
Cfa005486 Carpinus fangiana HOM05D004410 ORTHO05D006134 1.6e-113 413.3 292 72.9
COL.COLO4_23558 Corchorus olitorius HOM05D004410 ORTHO05D006134 2.8e-113 412.5 292 73.6
Potri.018G049800 Populus trichocarpa HOM05D004410 ORTHO05D006134 3.6e-113 412.1 291 71.5
Cfa013429 Carpinus fangiana HOM05D004410 ORTHO05D006134 4.7e-113 411.8 292 72.6
CANSAT56G1932 Cannabis sativa HOM05D004410 ORTHO05D006134 8.1e-113 411.0 294 71.8
CiPaw.08G034000 Carya illinoinensis HOM05D004410 ORTHO05D006134 1.1e-112 410.6 292 71.6
Glyma.17G060900 Glycine max HOM05D004410 ORTHO05D006134 1.1e-112 410.6 291 74.2
Manes.06G021200 Manihot esculenta HOM05D004410 ORTHO05D006134 1.1e-112 410.6 293 72.4
Gohir.A08G018100 Gossypium hirsutum HOM05D004410 ORTHO05D006134 1.8e-112 409.8 292 72.9
Lj5C681T1 Lonicera japonica HOM05D004410 ORTHO05D006134 1.8e-112 409.8 291 75.3
VMungo1215G0063 Vigna mungo HOM05D004410 ORTHO05D006134 4.0e-112 408.7 292 76.0
Dinv26445 Davidia involucrata HOM05D004410 ORTHO05D006134 5.2e-112 408.3 294 73.5
Lj7C624G8 Lonicera japonica HOM05D004410 ORTHO05D006134 6.9e-112 407.9 293 75.4
arahy.Tifrunner.gnm1.ann1.2H7I9L Arachis hypogaea HOM05D004410 ORTHO05D006134 1.2e-111 407.1 290 71.4
Sabra03G0001500 Salix brachista HOM05D004410 ORTHO05D006134 1.2e-111 407.1 305 69.2
arahy.Tifrunner.gnm1.ann1.FB81IM Arachis hypogaea HOM05D004410 ORTHO05D006134 1.5e-111 406.8 290 71.4
PSO210G0218 Papaver somniferum HOM05D004410 ORTHO05D006134 3.4e-111 405.6 291 72.9
PGR044G0126 Punica granatum HOM05D004410 ORTHO05D006134 4.4e-111 405.2 322 66.1
PSO210G4717 Papaver somniferum HOM05D004410 ORTHO05D006134 1.3e-110 403.7 291 72.5
Solyc06g072250.3 Solanum lycopersicum HOM05D004410 ORTHO05D006134 1.3e-110 403.7 290 70.3
Sopen06g028570 Solanum pennellii HOM05D004410 ORTHO05D006134 1.3e-110 403.7 290 70.3
GSVIVG01010906001 Vitis vinifera HOM05D004410 ORTHO05D006134 1.3e-110 403.7 292 70.9
CSS0020745 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 2.2e-110 402.9 293 70.6
SalBow8G1532 Salvia bowleyana HOM05D004410 ORTHO05D006134 2.2e-110 402.9 293 74.1
Lsat_1_v5_gn_8_69561 Lactuca sativa HOM05D004410 ORTHO05D005614 3.8e-110 402.1 317 71.3
Oeu038397.1 Olea europaea HOM05D004410 ORTHO05D006134 8.4e-110 401.0 292 71.6
ECA236G3126 Erigeron canadensis HOM05D004410 ORTHO05D006134 1.1e-109 400.6 293 75.4
Lalb_Chr07g0180591 Lupinus albus HOM05D004410 ORTHO05D006134 1.1e-109 400.6 291 70.4
CAN.G65.73 Capsicum annuum HOM05D004410 ORTHO05D006134 1.9e-109 399.8 290 70.0
Nitab4.5_0000339g0120 Nicotiana tabacum HOM05D004410 ORTHO05D006134 1.9e-109 399.8 290 72.8
Glyma.13G099200 Glycine max HOM05D004410 ORTHO05D006134 2.4e-109 399.4 291 80.4
Rhsim12G0146500 Rhododendron simsii HOM05D004410 ORTHO05D006134 2.4e-109 399.4 291 71.5
Migut.D01496 Erythranthe guttata HOM05D004410 ORTHO05D006134 5.4e-109 398.3 293 69.3
Ca_21245_v3 Cicer arietinum L. HOM05D004410 ORTHO05D006134 7.1e-109 397.9 288 71.9
Ah.14g083650 Amaranthus hybridus HOM05D004410 ORTHO05D006134 9.3e-109 397.5 291 69.1
AUR62021333 Chenopodium quinoa HOM05D004410 ORTHO05D006134 9.3e-109 397.5 289 70.9
PGSC0003DMG400027051 Solanum tuberosum HOM05D004410 ORTHO05D006134 9.3e-109 397.5 292 78.1
unitig_26.g9274 Utricularia gibba HOM05D004410 ORTHO05D006134 1.2e-108 397.1 293 77.8
CsaV3_5G008380 Cucumis sativus L. HOM05D004410 ORTHO05D006134 1.6e-108 396.7 289 69.2
RcHm_v2.0_Chr4g0400231 Rosa chinensis HOM05D004410 ORTHO05D006134 1.6e-108 396.7 290 70.0
FvH4_4g07620 Fragaria vesca HOM05D004410 ORTHO05D006134 2.1e-108 396.4 290 74.1
QL11p004818 Quercus lobata HOM05D004410 ORTHO05D006134 2.1e-108 396.4 291 72.9
Hund26318 Selenicereus undatus HOM05D004410 ORTHO05D006134 3.5e-108 395.6 292 69.2
Sc14g0001390 Simmondsia chinensis HOM05D004410 ORTHO05D006134 3.5e-108 395.6 292 68.8
MSTRG.4318 Avicennia marina HOM05D004410 ORTHO05D006134 4.6e-108 395.2 293 70.6
Cc09_g07700 Coffea canephora HOM05D004410 ORTHO05D006134 4.6e-108 395.2 293 72.7
Lj3g0017980 Lotus japonicus HOM05D004410 ORTHO05D006134 4.6e-108 395.2 292 78.1
MELO3C008596.2 Cucumis melo HOM05D004410 ORTHO05D006134 7.8e-108 394.4 291 69.1
Psat0s4042g0040 Pisum sativum HOM05D004410 ORTHO05D006134 7.8e-108 394.4 293 76.5
Phvul.003G141775 Phaseolus vulgaris HOM05D004410 ORTHO05D006134 1.7e-107 393.3 292 77.7
TPR.G5373 Trifolium pratense HOM05D004410 ORTHO05D006134 1.7e-107 393.3 291 68.7
EL10Ac8g18319 Beta vulgaris HOM05D004410 ORTHO05D006134 3.0e-107 392.5 293 71.0
HanXRQChr06g0179561 Helianthus annuus HOM05D004410 ORTHO05D006134 3.0e-107 392.5 292 72.9
Lj3g0011551 Lotus japonicus HOM05D004410 ORTHO05D006134 3.0e-107 392.5 294 77.6
Aqoxy3G03862 Aquilegia oxysepala HOM05D004410 ORTHO05D006134 3.9e-107 392.1 293 72.4
TWI36G0301 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 3.9e-107 392.1 292 69.2
AUR62033248 Chenopodium quinoa HOM05D004410 ORTHO05D006134 8.7e-107 391.0 289 69.6
FAN07G0604 Fragaria x ananassa HOM05D004410 ORTHO05D006134 8.7e-107 391.0 290 72.8
CSS0004658 Camellia sinensis var. sinensis HOM05D004410 ORTHO05D006134 1.1e-106 390.6 293 69.3
FAN22G1351 Fragaria x ananassa HOM05D004410 ORTHO05D006134 1.1e-106 390.6 290 72.1
Prupe.1G079400 Prunus persica HOM05D004410 ORTHO05D006134 1.5e-106 390.2 289 78.2
DCAR_019823 Daucus carota HOM05D004410 ORTHO05D006134 3.3e-106 389.0 281 71.9
MELO3C008923.2 Cucumis melo HOM05D004410 ORTHO05D006134 1.3e-105 387.1 291 67.4
TWI75G1515 Tripterygium wilfordii HOM05D004410 ORTHO05D006134 1.6e-105 386.7 326 62.9
Sed0003098 Sechium edule HOM05D004410 ORTHO05D006134 3.6e-105 385.6 291 67.0
MD13G1245300 Malus domestica HOM05D004410 ORTHO05D006134 4.8e-105 385.2 290 77.9
CANSAT21G0708 Cannabis sativa HOM05D004410 ORTHO05D006134 1.4e-104 383.6 289 67.5
CDE06G0833 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 1.4e-104 383.6 291 66.0
Nn8g40987 Nelumbo nucifera HOM05D004410 ORTHO05D006134 2.4e-104 382.9 272 71.3
Oeu016123.1 Olea europaea HOM05D004410 ORTHO05D006134 3.1e-104 382.5 322 64.9
FAN12G4072 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.0e-104 382.1 310 69.0
FAN17G1447 Fragaria x ananassa HOM05D004410 ORTHO05D006134 4.0e-104 382.1 308 69.2
CANSAT78G0037 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-103 379.4 290 66.9
CANSAT78G1079 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-103 379.4 289 67.5
CANSAT78G1648 Cannabis sativa HOM05D004410 ORTHO05D006134 2.6e-103 379.4 290 66.9
Ah.09g230150 Amaranthus hybridus HOM05D004410 ORTHO05D006134 5.8e-103 378.3 289 69.2
MD16G1253000 Malus domestica HOM05D004410 ORTHO05D006134 2.2e-102 376.3 291 77.0
Sabra03G0004700 Salix brachista HOM05D004410 ORTHO05D006134 6.4e-102 374.8 324 63.0
Haze_21974 Corylus avellana HOM05D004410 ORTHO05D006134 9.3e-101 370.9 234 78.6
Zm00001eb258180 Zea mays HOM05D004410 ORTHO05D006134 9.3e-101 370.9 292 64.0
SEGI_20363 Sequoiadendron giganteum HOM05D004410 ORTHO05D006134 8.7e-99 364.4 291 63.9
Os02g0804300 Oryza sativa ssp. japonica HOM05D004410 ORTHO05D006134 4.3e-98 362.1 296 63.2
Peaxi162Scf00171g00233 Petunia axillaris HOM05D004410 ORTHO05D006134 4.8e-97 358.6 269 68.0
Medtr4g007420 Medicago truncatula HOM05D004410 ORTHO05D006134 2.9e-94 349.4 294 60.9
Pp3c12_7620 Physcomitrium patens HOM05D004410 ORTHO05D006134 2.9e-94 349.4 297 61.6
Mapoly0020s0093 Marchantia polymorpha HOM05D004410 ORTHO05D006134 4.9e-94 348.6 292 64.0
ClCG11G007510 Citrullus lanatus HOM05D004410 ORTHO05D006134 8.4e-94 347.8 291 64.6
AagrBONN_evm.TU.Sc2ySwM_344.4914 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.4e-93 347.1 296 64.9
SGA_v2.0_scaffold36G14352 Striga asiatica HOM05D004410 ORTHO05D006134 1.4e-93 347.1 205 80.5
CANSAT78G0098 Cannabis sativa HOM05D004410 ORTHO05D006134 1.3e-91 340.5 218 77.1
SMO367G1042 Selaginella moellendorffii HOM05D004410 ORTHO05D006134 4.3e-90 335.5 295 62.4
vmacro16466 Vaccinium macrocarpon HOM05D004410 ORTHO05D006134 4.3e-90 335.5 385 52.5
SGA_v2.0_scaffold172G39079 Striga asiatica HOM05D004410 ORTHO05D006134 1.6e-89 333.6 192 83.3
TPR.G26767 Trifolium pratense HOM05D004410 ORTHO05D006134 4.5e-87 325.5 291 59.5
ATR0561G198 Amborella trichopoda HOM05D004410 ORTHO05D006134 5.8e-87 325.1 205 75.6
Cre09.g398104 Chlamydomonas reinhardtii HOM05D004410 ORTHO05D006134 1.8e-83 313.5 287 65.9
Medtr4g127640 Medicago truncatula HOM05D004410 ORTHO05D006134 3.7e-81 305.8 238 65.1
Nitab4.5_0003040g0070 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.0e-78 295.4 291 57.0
MCO01G124 Micromonas commoda HOM05D004410 ORTHO05D006134 6.1e-76 288.5 295 50.5
CBR_g3667 Chara braunii HOM05D004410 ORTHO05D006134 1.0e-75 287.7 289 53.6
Nitab4.5_0000782g0050 Nicotiana tabacum HOM05D004410 ORTHO05D006134 2.3e-75 286.6 298 55.0
Atru.chr12.1677 Acer truncatum HOM05D004410 ORTHO05D006134 1.7e-73 280.4 294 56.1
AagrBONN_evm.TU.Sc2ySwM_344.3468 Anthoceros agrestis HOM05D004410 ORTHO05D006134 1.1e-72 277.7 191 70.2
Actinidia40404 Actinidia chinensis HOM05D004410 ORTHO05D006134 1.5e-71 273.9 293 54.6
PRCOL_00001013 Prasinoderma coloniale HOM05D004410 ORTHO05D006134 1.5e-71 273.9 295 50.8
MBI13_g31549_MAGBIO Magnolia biondii HOM05D004410 ORTHO05D006134 1.0e-70 271.2 209 65.1
Dinv25402 Davidia involucrata HOM05D004410 ORTHO05D006134 4.2e-69 265.8 209 68.4
Haze_27417 Corylus avellana HOM05D004410 ORTHO05D006134 8.8e-67 258.1 295 49.8
CAN.G65.105 Capsicum annuum HOM05D004410 ORTHO05D006134 1.5e-66 257.3 168 72.6
BcaC03g14169 Brassica carinata HOM05D004410 ORTHO05D006134 4.5e-63 245.7 293 54.3
C02p14420 Brassica napus HOM05D004410 ORTHO05D006134 4.5e-63 245.7 293 54.3
BolC2t07566H Brassica oleracea HOM05D004410 ORTHO05D006134 4.5e-63 245.7 293 54.3
Nitab4.5_0000033g0380 Nicotiana tabacum HOM05D004410 ORTHO05D006134 5.7e-58 228.8 287 49.1
Cfa026974 Carpinus fangiana HOM05D004410 ORTHO05D006134 8.8e-51 204.9 270 47.4
TAR383G0389 Trochodendron aralioides HOM05D004410 ORTHO05D006134 1.1e-45 188.0 105 86.7
CANSAT78G0925 Cannabis sativa HOM05D004410 ORTHO05D006134 2.7e-44 183.3 108 82.4
Peaxi162Scf03693g00003 Petunia axillaris HOM05D004410 ORTHO05D006134 1.1e-40 171.4 228 45.2
Ca_20535_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 1.2e-39 167.9 154 60.4
Ca_20536_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.5e-39 166.4 154 59.7
Ca_30867_v3 Cicer arietinum L. HOM05D004410 ORTHO05D034587 3.5e-39 166.4 154 59.7
PSO210G2992 Papaver somniferum HOM05D004410 ORTHO05D006134 5.7e-34 149.1 85 84.7
CANSAT78G2262 Cannabis sativa HOM05D004410 ORTHO05D006134 3.7e-33 146.4 149 54.4
MCO02G313 Micromonas commoda HOM05D004410 ORTHO05D006134 6.3e-33 145.6 188 42.6
C03p79720 Brassica napus HOM05D004410 ORTHO05D027626 2.4e-32 143.7 73 97.3
BolC5t31886H Brassica oleracea HOM05D004410 ORTHO05D027626 2.4e-32 143.7 73 97.3
BcaC05g27254 Brassica carinata HOM05D004410 ORTHO05D027626 9.2e-32 141.7 72 97.2
Glyma.17G179900 Glycine max HOM05D004410 ORTHO05D027626 7.0e-24 115.5 68 83.8
Cfa002344 Carpinus fangiana HOM05D000705 ORTHO05D004052 5.0e-22 109.4 118 53.4
A02p08640 Brassica napus HOM05D004410 ORTHO05D097625 4.3e-21 106.3 185 41.6
Ca_20516_v3 Cicer arietinum L. HOM05D004410 ORTHO05D147600 1.6e-20 104.4 128 46.1
TAR383G0746 Trochodendron aralioides HOM05D004410 ORTHO05D006134 2.3e-19 100.5 69 71.0
Psat2g093080 Pisum sativum HOM05D000872 ORTHO05D000777 1.5e-18 97.8 85 58.8
Medtr4g007390 Medicago truncatula HOM05D004410 ORTHO05D006134 1.7e-14 84.3 59 66.1
CDE02G0278 Ceratophyllum demersum HOM05D004410 ORTHO05D006134 3.0e-14 83.6 106 42.5
PRCOL_00005471 Prasinoderma coloniale HOM05D004553 ORTHO05D005426 6.6e-14 82.4 231 32.0
PSO724G1151 Papaver somniferum HOM05D004410 ORTHO05D305184 8.1e-12 75.5 86 52.3
GSVIVG01006242001 Vitis vinifera HOM05D004410 ORTHO05D006134 2.0e-10 70.9 58 62.1


User provided reference genes

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