Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A10p09780 Brassica napus HOM05D000078 ORTHO05D000025 4.2e-43 177.6 86 100.0
BraA10t43060Z Brassica rapa HOM05D000078 ORTHO05D000025 4.2e-43 177.6 86 100.0
BcaC04g20613 Brassica carinata HOM05D000078 ORTHO05D000025 3.1e-38 161.4 86 91.9
C09p41500 Brassica napus HOM05D000078 ORTHO05D000025 3.1e-38 161.4 86 91.9
BolC9t57030H Brassica oleracea HOM05D000078 ORTHO05D000025 3.1e-38 161.4 86 91.9
BcaB08g35556 Brassica carinata HOM05D000078 ORTHO05D000025 2.0e-32 142.1 86 84.9
Sp6g14240 Schrenkiella parvula HOM05D000078 ORTHO05D000025 2.1e-26 122.1 89 73.0
Thhalv10015252m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 2.4e-22 108.6 87 70.1
Carub.0008s1208 Capsella rubella HOM05D000078 ORTHO05D000025 1.3e-20 102.8 88 60.2
AT5G51990 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 1.1e-19 99.8 87 62.1
CARHR264930 Cardamine hirsuta HOM05D000078 ORTHO05D000025 5.5e-19 97.4 87 59.8
AL8G26320 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 2.7e-18 95.1 87 56.3
AT4G25490 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 6.3e-15 84.0 87 54.0
Thhalv10027405m.g Eutrema salsugineum HOM05D000078 ORTHO05D000025 9.1e-14 80.1 87 54.0
Carub.0007s1552 Capsella rubella HOM05D000078 ORTHO05D000025 2.7e-13 78.6 90 50.0
THA.LOC104798736 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 2.7e-13 78.6 70 52.9
AL7G27600 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 3.5e-13 78.2 95 48.4
THA.LOC104811482 Tarenaya hassleriana HOM05D000078 ORTHO05D000025 3.5e-13 78.2 54 63.0
Carub.0007s1550 Capsella rubella HOM05D000078 ORTHO05D000025 1.7e-12 75.9 87 48.3
Aa31LG3G8410 Aethionema arabicum HOM05D000078 ORTHO05D000025 2.9e-12 75.1 55 65.5
Carub.0007s1551 Capsella rubella HOM05D000078 ORTHO05D000025 6.6e-12 73.9 87 47.1
Cpa.g.sc20.67 Carica papaya HOM05D000078 ORTHO05D000025 6.6e-12 73.9 60 63.3
Sp7g23510 Schrenkiella parvula HOM05D000078 ORTHO05D000025 6.6e-12 73.9 95 47.4
AL7G27630 Arabidopsis lyrata HOM05D000078 ORTHO05D000025 3.3e-11 71.6 87 49.4
BcaB01g04139 Brassica carinata HOM05D000078 ORTHO05D000025 3.3e-11 71.6 95 48.4
Rhsim03G0176400 Rhododendron simsii HOM05D000078 ORTHO05D000025 5.5e-11 70.9 56 60.7
Aa31sc308G20 Aethionema arabicum HOM05D000078 ORTHO05D000025 7.2e-11 70.5 90 50.0
QL11p055090 Quercus lobata HOM05D000078 ORTHO05D000025 9.5e-11 70.1 53 62.3
Aa31sc308G40 Aethionema arabicum HOM05D000078 ORTHO05D000025 1.6e-10 69.3 59 59.3
AT4G25470 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 1.6e-10 69.3 77 49.4
A03p56040 Brassica napus HOM05D000078 ORTHO05D000025 1.6e-10 69.3 87 50.6
QL09p015661 Quercus lobata HOM05D000078 ORTHO05D000025 1.6e-10 69.3 53 62.3
C03p19680 Brassica napus HOM05D000078 ORTHO05D000025 2.1e-10 68.9 96 49.0
Aa31sc308G30 Aethionema arabicum HOM05D000078 ORTHO05D000025 2.8e-10 68.6 59 57.6
CARHR116920 Cardamine hirsuta HOM05D000078 ORTHO05D000025 2.8e-10 68.6 60 55.0
BolC7t45920H Brassica oleracea HOM05D000078 ORTHO05D000025 3.6e-10 68.2 57 61.4
BraA08t34065Z Brassica rapa HOM05D000078 ORTHO05D000025 3.6e-10 68.2 77 50.6
C07p54350 Brassica napus HOM05D000078 ORTHO05D000025 4.7e-10 67.8 57 61.4
BcaB03g12472 Brassica carinata HOM05D000078 ORTHO05D096345 6.1e-10 67.4 56 57.1
BcaC07g38193 Brassica carinata HOM05D000078 ORTHO05D000025 6.1e-10 67.4 66 54.5
Atru.chr1.532 Acer truncatum HOM05D000078 ORTHO05D000025 8.0e-10 67.0 48 62.5
BcaC01g06038 Brassica carinata HOM05D000078 ORTHO05D000025 8.0e-10 67.0 96 47.9
QL06p044846 Quercus lobata HOM05D000078 ORTHO05D000025 8.0e-10 67.0 52 59.6
BolC8t48611H Brassica oleracea HOM05D000078 ORTHO05D000025 1.0e-09 66.6 86 46.5
FAN03G2923 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.4e-09 66.2 71 53.5
FAN03G3325 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.4e-09 66.2 71 53.5
FAN10G2753 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.4e-09 66.2 71 53.5
TWI23G0362 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 1.4e-09 66.2 81 51.9
FAN01G0113 Fragaria x ananassa HOM05D000078 ORTHO05D000025 1.8e-09 65.9 56 58.9
Potri.012G134100 Populus trichocarpa HOM05D000078 ORTHO05D000025 1.8e-09 65.9 67 55.2
Rhsim03G0176500 Rhododendron simsii HOM05D000078 ORTHO05D000025 1.8e-09 65.9 83 44.6
AT4G25480 Arabidopsis thaliana HOM05D000078 ORTHO05D000025 2.3e-09 65.5 96 46.9
ClCG01G005660 Citrullus lanatus HOM05D000078 ORTHO05D000025 3.0e-09 65.1 76 48.7
QL06p044858 Quercus lobata HOM05D000078 ORTHO05D000025 3.0e-09 65.1 52 57.7
QL06p044892 Quercus lobata HOM05D000078 ORTHO05D000025 3.0e-09 65.1 52 57.7
CARHR232890 Cardamine hirsuta HOM05D000078 ORTHO05D000025 4.0e-09 64.7 75 52.0
FvH4_7g28950 Fragaria vesca HOM05D000078 ORTHO05D000025 4.0e-09 64.7 72 54.2
FAN06G4002 Fragaria x ananassa HOM05D000078 ORTHO05D000025 4.0e-09 64.7 72 54.2
Nn6g34267 Nelumbo nucifera HOM05D000078 ORTHO05D000025 4.0e-09 64.7 70 48.6
BcaC07g38191 Brassica carinata HOM05D000078 ORTHO05D000025 8.9e-09 63.5 86 45.3
DCAR_020226 Daucus carota HOM05D000078 ORTHO05D000025 8.9e-09 63.5 72 45.8
vmacro06732 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 8.9e-09 63.5 82 45.1
BcaC06g32809 Brassica carinata HOM05D000078 ORTHO05D000025 1.2e-08 63.2 96 46.9
MD07G1262900 Malus domestica HOM05D000078 ORTHO05D000025 1.2e-08 63.2 89 46.1
A03p16710 Brassica napus HOM05D000078 ORTHO05D000025 2.0e-08 62.4 96 44.8
BraA03t10957Z Brassica rapa HOM05D000078 ORTHO05D000025 2.0e-08 62.4 96 44.8
ClCG05G007780 Citrullus lanatus HOM05D000078 ORTHO05D000025 2.0e-08 62.4 80 48.8
Hma1.2p1_0270F.1_g108500 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 2.0e-08 62.4 53 52.8
QL08p055558 Quercus lobata HOM05D000078 ORTHO05D000025 2.0e-08 62.4 76 40.8
TWI39G0191 Tripterygium wilfordii HOM05D000078 ORTHO05D000025 2.0e-08 62.4 75 49.3
vmacro06730 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 2.0e-08 62.4 78 47.4
MELO3C006869.2 Cucumis melo HOM05D000078 ORTHO05D000025 2.6e-08 62.0 80 47.5
FAN06G4557 Fragaria x ananassa HOM05D000078 ORTHO05D000025 3.4e-08 61.6 87 49.4
CsaV3_3G016760 Cucumis sativus L. HOM05D000078 ORTHO05D000025 4.4e-08 61.2 56 55.4
QL08p055567 Quercus lobata HOM05D000078 ORTHO05D000025 4.4e-08 61.2 72 41.7
vmacro06731 Vaccinium macrocarpon HOM05D000078 ORTHO05D000025 4.4e-08 61.2 61 50.8
Lj1C991T7 Lonicera japonica HOM05D000078 ORTHO05D000025 5.7e-08 60.8 79 41.8
RcHm_v2.0_Chr1g0376641 Rosa chinensis HOM05D000078 ORTHO05D000025 5.7e-08 60.8 82 45.1
CSS0009762 Camellia sinensis var. sinensis HOM05D000078 ORTHO05D000025 7.5e-08 60.5 73 46.6
CiPaw.03G102000 Carya illinoinensis HOM05D000078 ORTHO05D000025 7.5e-08 60.5 82 46.3
QL08p055541 Quercus lobata HOM05D000078 ORTHO05D000025 7.5e-08 60.5 69 46.4
SGA_v2.0_scaffold2G01085 Striga asiatica HOM05D000078 ORTHO05D000025 7.5e-08 60.5 57 57.9
Thecc.03G169800 Theobroma cacao HOM05D000078 ORTHO05D000025 7.5e-08 60.5 84 48.8
MSTRG.8770 Avicennia marina HOM05D000078 ORTHO05D000025 9.8e-08 60.1 72 48.6
Hma1.2p1_0099F.1_g048610 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 9.8e-08 60.1 75 48.0
GSVIVG01010631001 Vitis vinifera HOM05D000078 ORTHO05D000025 9.8e-08 60.1 61 52.5
PSO782G5025 Papaver somniferum HOM05D000078 ORTHO05D000025 1.3e-07 59.7 89 42.7
QL09p015667 Quercus lobata HOM05D000078 ORTHO05D000025 1.3e-07 59.7 90 45.6
Aa31sc886G20 Aethionema arabicum HOM05D000078 ORTHO05D000025 2.2e-07 58.9 58 55.2
Haze_13764 Corylus avellana HOM05D000078 ORTHO05D000025 2.2e-07 58.9 80 42.5
Hma1.2p1_0371F.1_g138170 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 2.2e-07 58.9 59 54.2
PSO478G3057 Papaver somniferum HOM05D000078 ORTHO05D000025 2.2e-07 58.9 50 58.0
Ciclev10007068m.g Citrus clementina HOM05D000078 ORTHO05D000025 2.8e-07 58.5 60 50.0
MELO3C005367.2 Cucumis melo HOM05D000078 ORTHO05D000025 2.8e-07 58.5 54 51.9
CsaV3_5G005890 Cucumis sativus L. HOM05D000078 ORTHO05D000025 2.8e-07 58.5 77 44.2
DCAR_009399 Daucus carota HOM05D000078 ORTHO05D000025 3.7e-07 58.2 79 45.6
Prupe.2G289500 Prunus persica HOM05D000078 ORTHO05D000025 3.7e-07 58.2 85 44.7
Aqoxy7G00461 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 4.9e-07 57.8 57 50.9
Nn1g01343 Nelumbo nucifera HOM05D000078 ORTHO05D000025 4.9e-07 57.8 52 53.8
Nitab4.5_0002394g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 4.9e-07 57.8 76 42.1
Hund28363 Selenicereus undatus HOM05D000078 ORTHO05D000025 4.9e-07 57.8 65 49.2
Aqoxy7G00459 Aquilegia oxysepala HOM05D000078 ORTHO05D000025 6.3e-07 57.4 61 49.2
BraA08t34063Z Brassica rapa HOM05D000078 ORTHO05D000025 6.3e-07 57.4 85 44.7
COL.COLO4_14253 Corchorus olitorius HOM05D000078 ORTHO05D000025 6.3e-07 57.4 88 43.2
Dinv28493 Davidia involucrata HOM05D000078 ORTHO05D000025 6.3e-07 57.4 86 44.2
Sabra15G0147900 Salix brachista HOM05D000078 ORTHO05D000025 6.3e-07 57.4 60 50.0
Sed0024508 Sechium edule HOM05D000078 ORTHO05D000025 6.3e-07 57.4 77 45.5
Cc02_g03430 Coffea canephora HOM05D000078 ORTHO05D000025 8.3e-07 57.0 83 41.0
Manes.06G143102 Manihot esculenta HOM05D000078 ORTHO05D000025 8.3e-07 57.0 88 46.6
Manes.14G029600 Manihot esculenta HOM05D000078 ORTHO05D000025 8.3e-07 57.0 72 54.2
Potri.015G136400 Populus trichocarpa HOM05D000078 ORTHO05D000025 8.3e-07 57.0 77 44.2
Hma1.2p1_0371F.1_g138180 Hydrangea macrophylla HOM05D000078 ORTHO05D000025 1.1e-06 56.6 56 53.6
Lsat_1_v5_gn_2_130641 Lactuca sativa HOM05D000078 ORTHO05D000025 1.1e-06 56.6 74 48.6
Nitab4.5_0001083g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 1.1e-06 56.6 70 42.9
Sed0021532 Sechium edule HOM05D000078 ORTHO05D000025 1.1e-06 56.6 51 54.9
TAR375G0117 Trochodendron aralioides HOM05D000078 ORTHO05D000025 1.1e-06 56.6 54 50.0
Actinidia34076 Actinidia chinensis HOM05D000078 ORTHO05D000025 1.4e-06 56.2 65 49.2
PGSC0003DMG400014308 Solanum tuberosum HOM05D000078 ORTHO05D000025 1.4e-06 56.2 68 41.2
MBI04_g45828_MAGBIO Magnolia biondii HOM05D000078 ORTHO05D000025 1.8e-06 55.8 57 49.1
BcaB03g12469 Brassica carinata HOM05D000078 ORTHO05D000025 2.4e-06 55.5 42 57.1
BcaB03g12470 Brassica carinata HOM05D000078 ORTHO05D000025 2.4e-06 55.5 41 61.0
BcaB03g12471 Brassica carinata HOM05D000078 ORTHO05D000025 2.4e-06 55.5 41 61.0
MD01G1196100 Malus domestica HOM05D000078 ORTHO05D000025 2.4e-06 55.5 89 43.8
Nitab4.5_0006565g0010 Nicotiana tabacum HOM05D000078 ORTHO05D000025 2.4e-06 55.5 76 40.8
Prupe.5G089900 Prunus persica HOM05D000078 ORTHO05D000025 2.4e-06 55.5 59 45.8
QL08p055506 Quercus lobata HOM05D000078 ORTHO05D000025 3.1e-06 55.1 64 40.6
Cfa012099 Carpinus fangiana HOM05D000078 ORTHO05D000025 4.1e-06 54.7 53 49.1
Gohir.A09G039300 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.1e-06 54.7 54 50.0
Gohir.D09G040400 Gossypium hirsutum HOM05D000078 ORTHO05D000025 4.1e-06 54.7 54 50.0
Gorai.006G046200 Gossypium raimondii HOM05D000078 ORTHO05D000025 4.1e-06 54.7 54 50.0
Prupe.5G090000 Prunus persica HOM05D000078 ORTHO05D000025 4.1e-06 54.7 51 47.1
QL01p013538 Quercus lobata HOM05D000078 ORTHO05D000025 4.1e-06 54.7 56 44.6
PGSC0003DMG400014311 Solanum tuberosum HOM05D000078 ORTHO05D000025 4.1e-06 54.7 68 41.2
MD06G1072300 Malus domestica HOM05D000078 ORTHO05D000025 5.4e-06 54.3 71 42.3
Nitab4.5_0005990g0050 Nicotiana tabacum HOM05D000078 ORTHO05D000025 5.4e-06 54.3 78 47.4
QL09p015560 Quercus lobata HOM05D000078 ORTHO05D000025 5.4e-06 54.3 82 39.0
DCAR_010855 Daucus carota HOM05D000078 ORTHO05D000025 7.0e-06 53.9 83 34.9
FAN08G0994 Fragaria x ananassa HOM05D000078 ORTHO05D000025 7.0e-06 53.9 75 37.3
Peaxi162Scf00648g00119 Petunia axillaris HOM05D000078 ORTHO05D000025 7.0e-06 53.9 79 40.5
Manes.01G067500 Manihot esculenta HOM05D000078 ORTHO05D000025 9.2e-06 53.5 57 49.1
QL12p017124 Quercus lobata HOM05D000078 ORTHO05D000025 9.2e-06 53.5 79 43.0


User provided reference genes

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