Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p68290 Brassica napus HOM05D000161 ORTHO05D005857 1.1e-231 806.2 387 100.0
BraA09t42165Z Brassica rapa HOM05D000161 ORTHO05D005857 4.1e-231 804.3 387 99.7
C08p52750 Brassica napus HOM05D000161 ORTHO05D005857 4.9e-224 780.8 389 97.4
C08p52850 Brassica napus HOM05D000161 ORTHO05D005857 2.4e-223 778.5 389 97.2
BolC8t52801H Brassica oleracea HOM05D000161 ORTHO05D005857 5.4e-215 750.7 393 94.1
Thhalv10007888m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.5e-212 742.7 390 93.1
Sp1g02440 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.1e-211 738.8 391 92.3
BraA10t42474Z Brassica rapa HOM05D000161 ORTHO05D005857 4.4e-209 731.1 395 91.4
CARHR002850 Cardamine hirsuta HOM05D000161 ORTHO05D005857 5.8e-209 730.7 391 91.6
AL1G12980 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 7.6e-209 730.3 391 91.8
BcaC05g24526 Brassica carinata HOM05D000161 ORTHO05D005857 7.6e-209 730.3 397 91.7
BolC5t28975H Brassica oleracea HOM05D000161 ORTHO05D005857 7.6e-209 730.3 397 91.7
AT1G03475 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 9.9e-209 729.9 390 92.1
A10p02010 Brassica napus HOM05D000161 ORTHO05D005857 1.3e-208 729.6 394 91.4
BcaB02g06929 Brassica carinata HOM05D000161 ORTHO05D005857 1.7e-208 729.2 386 93.3
C05p01960 Brassica napus HOM05D000161 ORTHO05D005857 6.4e-208 727.2 399 90.7
BcaC07g42243 Brassica carinata HOM05D000161 ORTHO05D005857 2.4e-207 725.3 366 96.7
BcaC07g42252 Brassica carinata HOM05D000161 ORTHO05D005857 7.1e-207 723.8 364 97.0
Carub.0001s0261 Capsella rubella HOM05D000161 ORTHO05D005857 2.7e-206 721.8 397 90.4
Carub.0006s3385 Capsella rubella HOM05D000161 ORTHO05D005857 6.2e-195 684.1 389 85.1
Aa31LG5G2700 Aethionema arabicum HOM05D000161 ORTHO05D009031 9.9e-193 676.8 391 84.7
THA.LOC104826018 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 6.4e-192 674.1 388 85.3
Atru.chr8.1036 Acer truncatum HOM05D000161 ORTHO05D005857 1.3e-181 639.8 391 80.3
AL6G49730 Arabidopsis lyrata HOM05D000161 ORTHO05D005857 9.7e-180 633.6 388 79.6
Ciclev10011903m.g Citrus clementina HOM05D000161 ORTHO05D005857 1.3e-179 633.3 392 79.1
Nn7g38388 Nelumbo nucifera HOM05D000161 ORTHO05D005857 2.2e-179 632.5 395 78.5
Medtr5g098800 Medicago truncatula HOM05D000161 ORTHO05D005857 6.3e-179 630.9 392 78.3
CSS0003887 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.4e-178 629.0 347 85.3
Eucgr.K01354 Eucalyptus grandis HOM05D000161 ORTHO05D005857 2.4e-178 629.0 371 81.1
PSO384G2739 Papaver somniferum HOM05D000161 ORTHO05D005857 5.3e-178 627.9 364 82.1
arahy.Tifrunner.gnm1.ann1.S9CZ9A Arachis hypogaea HOM05D000161 ORTHO05D005857 9.0e-178 627.1 388 77.3
CAN.G465.6 Capsicum annuum HOM05D000161 ORTHO05D005857 9.0e-178 627.1 387 76.7
Potri.011G023900 Populus trichocarpa HOM05D000161 ORTHO05D005857 9.0e-178 627.1 380 80.8
PGR044G2307 Punica granatum HOM05D000161 ORTHO05D005857 9.0e-178 627.1 384 80.7
TPR.G35901 Trifolium pratense HOM05D000161 ORTHO05D005857 9.0e-178 627.1 370 80.3
Sabra11G0014900 Salix brachista HOM05D000161 ORTHO05D005857 1.2e-177 626.7 349 85.4
Dinv05290 Davidia involucrata HOM05D000161 ORTHO05D005857 1.5e-177 626.3 336 86.9
Psat2g001760 Pisum sativum HOM05D000161 ORTHO05D005857 1.5e-177 626.3 396 77.5
TWI60G0112 Tripterygium wilfordii HOM05D000161 ORTHO05D005857 1.5e-177 626.3 389 79.2
PSO017G6394 Papaver somniferum HOM05D000161 ORTHO05D005857 2.0e-177 625.9 365 80.5
Prupe.3G183400 Prunus persica HOM05D000161 ORTHO05D005857 3.4e-177 625.2 391 77.7
CiPaw.06G002700 Carya illinoinensis HOM05D000161 ORTHO05D005857 4.5e-177 624.8 343 85.7
Nitab4.5_0011255g0010 Nicotiana tabacum HOM05D000161 ORTHO05D005857 4.5e-177 624.8 389 78.9
QL04p064793 Quercus lobata HOM05D000161 ORTHO05D005857 4.5e-177 624.8 346 85.0
Manes.16G000600 Manihot esculenta HOM05D000161 ORTHO05D005857 5.9e-177 624.4 394 76.4
arahy.Tifrunner.gnm1.ann1.DVM8T3 Arachis hypogaea HOM05D000161 ORTHO05D005857 7.6e-177 624.0 388 77.1
Haze_00005 Corylus avellana HOM05D000161 ORTHO05D005857 1.0e-176 623.6 395 78.7
PGSC0003DMG400011264 Solanum tuberosum HOM05D000161 ORTHO05D005857 1.3e-176 623.2 340 85.6
PSO478G0506 Papaver somniferum HOM05D000161 ORTHO05D005857 1.7e-176 622.9 347 83.9
Solyc10g005110.3 Solanum lycopersicum HOM05D000161 ORTHO05D005857 2.2e-176 622.5 387 78.6
LjContig00081g0009344 Lotus japonicus HOM05D000161 ORTHO05D005857 2.9e-176 622.1 388 76.8
Sopen10g001130 Solanum pennellii HOM05D000161 ORTHO05D005857 2.9e-176 622.1 387 78.3
MBI18_g38427_MAGBIO Magnolia biondii HOM05D000161 ORTHO05D005857 1.1e-175 620.2 372 81.5
MD17G1131200 Malus domestica HOM05D000161 ORTHO05D005857 1.1e-175 620.2 391 77.0
QL04p064724 Quercus lobata HOM05D000161 ORTHO05D005857 1.4e-175 619.8 387 78.0
Ca_06491_v3 Cicer arietinum L. HOM05D000161 ORTHO05D005857 2.5e-175 619.0 376 79.0
Sp6g03240 Schrenkiella parvula HOM05D000161 ORTHO05D005857 2.5e-175 619.0 388 78.6
Phvul.008G289900 Phaseolus vulgaris HOM05D000161 ORTHO05D005857 3.2e-175 618.6 388 77.1
Cfa016257 Carpinus fangiana HOM05D000161 ORTHO05D005857 5.5e-175 617.8 392 78.3
CANSAT64G1800 Cannabis sativa HOM05D000161 ORTHO05D005857 7.2e-175 617.5 378 78.8
RcHm_v2.0_Chr2g0153001 Rosa chinensis HOM05D000161 ORTHO05D005857 7.2e-175 617.5 388 78.6
FAN09G1815 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.2e-174 616.7 389 78.7
Lj3g0003708 Lotus japonicus HOM05D000161 ORTHO05D005857 1.2e-174 616.7 390 78.5
FAN05G2261 Fragaria x ananassa HOM05D000161 ORTHO05D005857 1.6e-174 616.3 389 78.1
DCAR_024972 Daucus carota HOM05D000161 ORTHO05D005857 2.1e-174 615.9 336 86.6
MD09G1144600 Malus domestica HOM05D000161 ORTHO05D005857 2.1e-174 615.9 343 84.0
FAN02G1171 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.6e-174 614.8 389 77.9
FAN14G2022 Fragaria x ananassa HOM05D000161 ORTHO05D005857 4.6e-174 614.8 379 78.4
CDE02G0797 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 6.1e-174 614.4 362 80.4
FvH4_6g39170 Fragaria vesca HOM05D000161 ORTHO05D005857 6.1e-174 614.4 389 78.4
ClCG07G011020 Citrullus lanatus HOM05D000161 ORTHO05D005857 7.9e-174 614.0 390 77.4
Sc13g0008500 Simmondsia chinensis HOM05D000161 ORTHO05D005857 1.0e-173 613.6 344 84.6
Glyma.14G003200 Glycine max HOM05D000161 ORTHO05D005857 3.0e-173 612.1 386 76.7
EL10Ac3g05707 Beta vulgaris HOM05D000161 ORTHO05D005857 8.8e-173 610.5 367 79.0
Lalb_Chr04g0247041 Lupinus albus HOM05D000161 ORTHO05D005857 1.1e-172 610.1 396 74.2
Hund11764 Selenicereus undatus HOM05D000161 ORTHO05D005857 1.5e-172 609.8 340 83.5
HanXRQChr03g0090181 Helianthus annuus HOM05D000161 ORTHO05D005857 5.7e-172 607.8 384 78.1
Nitab4.5_0000075g0030 Nicotiana tabacum HOM05D000161 ORTHO05D005857 7.4e-172 607.4 395 76.2
Gohir.A08G050600 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.2e-171 605.9 387 77.3
CsaV3_4G007220 Cucumis sativus L. HOM05D000161 ORTHO05D005857 2.8e-171 605.5 398 75.6
Gorai.004G062500 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.8e-171 605.5 387 77.8
SGA_v2.0_scaffold423G51450 Striga asiatica HOM05D000161 ORTHO05D005857 4.8e-171 604.7 389 75.6
Lj6A29G59 Lonicera japonica HOM05D000161 ORTHO05D005857 6.3e-171 604.4 339 85.0
CSS0041680 Camellia sinensis var. sinensis HOM05D000161 ORTHO05D005857 2.4e-170 602.4 369 78.9
Peaxi162Scf00005g00134 Petunia axillaris HOM05D000161 ORTHO05D005857 2.4e-170 602.4 396 74.5
Aqoxy1G01372 Aquilegia oxysepala HOM05D000161 ORTHO05D005857 3.1e-170 602.1 391 74.4
Migut.M02037 Erythranthe guttata HOM05D000161 ORTHO05D005857 4.1e-170 601.7 388 75.0
Duzib138G0552 Durio zibethinus HOM05D000161 ORTHO05D005857 5.3e-170 601.3 389 76.3
Ah.07g209030 Amaranthus hybridus HOM05D000161 ORTHO05D005857 6.9e-170 600.9 380 76.6
ECA240G1954 Erigeron canadensis HOM05D000161 ORTHO05D005857 2.6e-169 599.0 337 84.9
SalBow8G0095 Salvia bowleyana HOM05D000161 ORTHO05D005857 2.6e-169 599.0 426 71.4
Rhsim02G0171600 Rhododendron simsii HOM05D000161 ORTHO05D005857 3.4e-169 598.6 377 77.2
MSTRG.16382 Avicennia marina HOM05D000161 ORTHO05D005857 7.7e-169 597.4 403 72.5
Thecc.01G176100 Theobroma cacao HOM05D000161 ORTHO05D005857 1.0e-168 597.0 372 77.4
Zm00001eb071140 Zea mays HOM05D000161 ORTHO05D005857 6.5e-168 594.3 350 80.0
ATR0763G015 Amborella trichopoda HOM05D000161 ORTHO05D005857 8.5e-168 594.0 388 75.8
Os04g0610800 Oryza sativa ssp. japonica HOM05D000161 ORTHO05D005857 1.4e-167 593.2 348 81.0
HPP92_026322 Vanilla planifolia HOM05D000161 ORTHO05D005857 1.4e-167 593.2 394 72.8
unitig_32.g11549 Utricularia gibba HOM05D000161 ORTHO05D005857 3.2e-167 592.0 337 81.3
Hma1.2p1_0166F.1_g073470 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 3.6e-166 588.6 341 82.1
TAR624G0726 Trochodendron aralioides HOM05D000161 ORTHO05D005857 1.0e-165 587.0 377 76.9
vmacro11023 Vaccinium macrocarpon HOM05D000161 ORTHO05D005857 1.8e-165 586.3 448 66.7
Gohir.A07G184900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.6e-164 582.4 374 74.6
GSVIVG01015906001 Vitis vinifera HOM05D000161 ORTHO05D005857 5.7e-164 581.3 308 87.0
Gohir.D08G060400 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.8e-163 578.9 302 88.7
Sed0024620 Sechium edule HOM05D000161 ORTHO05D005857 1.5e-161 573.2 377 75.3
TAR626G1695 Trochodendron aralioides HOM05D000161 ORTHO05D005857 2.7e-158 562.4 318 84.0
AUR62021226 Chenopodium quinoa HOM05D000161 ORTHO05D005857 8.0e-158 560.8 340 78.8
Gorai.007G172100 Gossypium raimondii HOM05D000161 ORTHO05D005857 2.3e-157 559.3 363 76.0
Pp3c21_600 Physcomitrium patens HOM05D000161 ORTHO05D005857 8.2e-155 550.8 344 75.6
AUR62016021 Chenopodium quinoa HOM05D000161 ORTHO05D005857 1.4e-154 550.1 358 74.9
Lsat_1_v5_gn_3_111240 Lactuca sativa HOM05D000161 ORTHO05D005857 1.7e-152 543.1 373 73.2
Oeu008990.3 Olea europaea HOM05D000161 ORTHO05D005857 8.5e-152 540.8 497 57.7
Oeu008737.1 Olea europaea HOM05D000161 ORTHO05D005857 4.2e-151 538.5 555 54.8
Cpa.g.sc417.1 Carica papaya HOM05D000161 ORTHO05D005857 7.2e-151 537.7 385 69.4
AagrBONN_evm.TU.Sc2ySwM_228.282 Anthoceros agrestis HOM05D000161 ORTHO05D005857 2.1e-150 536.2 364 70.3
Pp3c22_5800 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.1e-150 536.2 341 73.9
Cc09_g04450 Coffea canephora HOM05D000161 ORTHO05D005857 6.7e-149 531.2 550 52.9
SMO354G0013 Selaginella moellendorffii HOM05D000161 ORTHO05D005857 3.7e-147 525.4 303 79.5
MELO3C016226.2 Cucumis melo HOM05D000161 ORTHO05D005857 4.8e-147 525.0 390 69.0
BcaC07g42260 Brassica carinata HOM05D000161 ORTHO05D005857 8.2e-147 524.2 243 99.2
Mapoly0039s0053 Marchantia polymorpha HOM05D000161 ORTHO05D005857 8.2e-147 524.2 335 72.8
MCO07G306 Micromonas commoda HOM05D000161 ORTHO05D005857 1.4e-133 480.3 339 67.6
Gorai.001G214600 Gossypium raimondii HOM05D000161 ORTHO05D005857 1.2e-129 467.2 311 72.3
CDE05G1536 Ceratophyllum demersum HOM05D000161 ORTHO05D005857 1.9e-127 459.9 363 66.1
Cre02.g085450 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 3.5e-121 439.1 342 61.1
PRCOL_00002331 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.1e-119 434.1 308 66.6
Gohir.D11G161800 Gossypium hirsutum HOM05D000161 ORTHO05D005857 2.1e-113 413.3 288 71.9
Zm00001eb430670 Zea mays HOM05D000161 ORTHO05D005857 1.6e-110 403.7 252 76.6
THA.LOC104815952 Tarenaya hassleriana HOM05D000161 ORTHO05D005857 2.7e-105 386.3 277 70.8
Thhalv10029252m.g Eutrema salsugineum HOM05D000161 ORTHO05D005857 1.9e-103 380.2 212 84.4
AT4G03205 Arabidopsis thaliana HOM05D000161 ORTHO05D005857 4.7e-102 375.6 236 80.5
Cfa025537 Carpinus fangiana HOM05D000161 ORTHO05D005857 1.5e-100 370.5 341 54.3
CBR_g45705 Chara braunii HOM05D000161 ORTHO05D005857 9.2e-98 361.3 340 53.8
Gohir.A11G154900 Gossypium hirsutum HOM05D000161 ORTHO05D005857 3.6e-94 349.4 258 69.0
Haze_26605 Corylus avellana HOM05D000161 ORTHO05D005857 2.1e-89 333.6 288 54.9
Gohir.D07G191700 Gossypium hirsutum HOM05D000161 ORTHO05D005857 1.9e-87 327.0 203 75.9
Mapoly0070s0075 Marchantia polymorpha HOM05D000161 ORTHO05D005857 2.1e-65 253.8 320 41.9
AagrBONN_evm.TU.Sc2ySwM_228.3299 Anthoceros agrestis HOM05D000161 ORTHO05D005857 3.5e-65 253.1 322 42.2
CBR_g23778 Chara braunii HOM05D000161 ORTHO05D005857 3.5e-65 253.1 400 37.5
MCO09G037 Micromonas commoda HOM05D000161 ORTHO05D005857 1.8e-64 250.8 310 43.5
PSO339G2005 Papaver somniferum HOM05D000161 ORTHO05D005857 1.8e-64 250.8 127 89.8
Pp3c15_4200 Physcomitrium patens HOM05D000161 ORTHO05D005857 2.3e-64 250.4 323 42.4
Cre02.g092600 Chlamydomonas reinhardtii HOM05D000161 ORTHO05D005857 6.5e-59 232.3 311 40.5
arahy.Tifrunner.gnm1.ann1.I5BL8A Arachis hypogaea HOM05D000161 ORTHO05D005857 3.7e-54 216.5 179 62.6
PRCOL_00006910 Prasinoderma coloniale HOM05D000161 ORTHO05D005857 1.8e-53 214.2 328 39.0
SEGI_02394 Sequoiadendron giganteum HOM05D000161 ORTHO05D005857 1.3e-51 208.0 247 42.1
Hma1.2p1_2159F.1_g315510 Hydrangea macrophylla HOM05D000161 ORTHO05D005857 8.2e-46 188.7 115 80.9
arahy.Tifrunner.gnm1.ann1.0Q00UB Arachis hypogaea HOM05D000235 ORTHO05D000147 1.7e-43 181.0 155 59.4
arahy.Tifrunner.gnm1.ann1.F4AYRR Arachis hypogaea HOM05D000161 ORTHO05D005857 4.8e-30 136.3 92 71.7
CARHR251650 Cardamine hirsuta HOM05D000161 ORTHO05D115956 8.8e-24 115.5 107 63.6
SHI00986 Sapria himalayana HOM05D000161 ORTHO05D005857 2.0e-23 114.4 56 87.5
CARHR251640 Cardamine hirsuta HOM05D000161 ORTHO05D116224 3.4e-23 113.6 157 43.9
arahy.Tifrunner.gnm1.ann1.0Z8MR5 Arachis hypogaea HOM05D000161 ORTHO05D003903 5.4e-21 106.3 62 80.6
RcHm_v2.0_Chr6g0298511 Rosa chinensis HOM05D000161 ORTHO05D340689 5.2e-16 89.7 163 44.2
CAN.G129.44 Capsicum annuum HOM05D000161 ORTHO05D005857 1.2e-15 88.6 97 55.7
arahy.Tifrunner.gnm1.ann1.6HI1EE Arachis hypogaea HOM05D000161 ORTHO05D005857 1.4e-13 81.6 49 71.4
arahy.Tifrunner.gnm1.ann1.1EXH41 Arachis hypogaea HOM05D000161 ORTHO05D003770 8.6e-11 72.4 33 84.8
arahy.Tifrunner.gnm1.ann1.DD88BD Arachis hypogaea HOM05D000161 ORTHO05D086871 4.7e-09 66.6 34 76.5
QL05p043498 Quercus lobata HOM05D020871 ORTHO05D337541 7.5e-07 59.3 43 60.5


User provided reference genes

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