Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p65920 Brassica napus HOM05D001988 ORTHO05D019859 9.2e-110 400.2 199 100.0
BcaC07g38386 Brassica carinata HOM05D001988 ORTHO05D006298 1.8e-52 209.9 444 37.2
C08p11420 Brassica napus HOM05D001988 ORTHO05D006298 1.8e-52 209.9 444 37.2
BolC8t48823H Brassica oleracea HOM05D001988 ORTHO05D006298 1.8e-52 209.9 444 37.2
Thhalv10007194m.g Eutrema salsugineum HOM05D001988 ORTHO05D006298 3.0e-52 209.1 446 36.8
A08p35180 Brassica napus HOM05D001988 ORTHO05D006298 5.2e-52 208.4 445 36.4
BraA08t35427Z Brassica rapa HOM05D001988 ORTHO05D006298 5.2e-52 208.4 445 36.4
BcaC07g42533 Brassica carinata HOM05D001988 ORTHO05D006298 5.7e-51 204.9 448 37.1
AL1G18820 Arabidopsis lyrata HOM05D001988 ORTHO05D006298 3.1e-49 199.1 451 35.7
Aa31sc314G30 Aethionema arabicum HOM05D001988 ORTHO05D006298 7.7e-48 194.5 453 34.9
BcaB03g13337 Brassica carinata HOM05D001988 ORTHO05D006298 3.8e-47 192.2 173 65.3
AT1G08410 Arabidopsis thaliana HOM05D001988 ORTHO05D006298 8.5e-47 191.0 178 61.8
Carub.0001s0776 Capsella rubella HOM05D001988 ORTHO05D006298 7.2e-46 188.0 178 60.7
Sp1g07060 Schrenkiella parvula HOM05D001988 ORTHO05D006298 9.4e-46 187.6 457 35.0
CARHR008290 Cardamine hirsuta HOM05D001988 ORTHO05D006298 2.3e-44 183.0 462 34.0
BolC8t52532H Brassica oleracea HOM05D001988 ORTHO05D019859 4.0e-44 182.2 209 54.1
THA.LOC104826449 Tarenaya hassleriana HOM05D001988 ORTHO05D006298 4.8e-42 175.3 450 33.6
COL.COLO4_25404 Corchorus olitorius HOM05D001988 ORTHO05D006298 9.4e-38 161.0 457 31.5
MD10G1037500 Malus domestica HOM05D001988 ORTHO05D006298 8.0e-37 157.9 457 30.9
Eucgr.J00579 Eucalyptus grandis HOM05D001988 ORTHO05D006298 2.3e-36 156.4 460 31.7
FvH4_3g26290 Fragaria vesca HOM05D001988 ORTHO05D006298 2.3e-36 156.4 454 30.4
FAN21G2899 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.3e-36 156.4 454 30.4
Atru.chr3.3101 Acer truncatum HOM05D001988 ORTHO05D006298 3.0e-36 156.0 444 31.5
CiPaw.13G129100 Carya illinoinensis HOM05D001988 ORTHO05D006298 3.0e-36 156.0 173 55.5
MD05G1034700 Malus domestica HOM05D001988 ORTHO05D006298 3.0e-36 156.0 448 30.8
Hma1.2p1_0101F.1_g049570 Hydrangea macrophylla HOM05D001988 ORTHO05D006298 5.2e-36 155.2 442 31.9
Thecc.09G271000 Theobroma cacao HOM05D001988 ORTHO05D006298 6.8e-36 154.8 458 30.6
Haze_23572 Corylus avellana HOM05D001988 ORTHO05D006298 8.8e-36 154.5 173 54.3
Duzib168G1815 Durio zibethinus HOM05D001988 ORTHO05D006298 1.2e-35 154.1 171 53.2
RcHm_v2.0_Chr5g0048681 Rosa chinensis HOM05D001988 ORTHO05D006298 1.2e-35 154.1 454 30.0
Manes.04G062600 Manihot esculenta HOM05D001988 ORTHO05D006298 2.0e-35 153.3 459 30.9
Atru.chr3.3098 Acer truncatum HOM05D001988 ORTHO05D006298 2.6e-35 152.9 162 57.4
Cfa010182 Carpinus fangiana HOM05D001988 ORTHO05D006298 2.6e-35 152.9 173 54.3
Ciclev10028074m.g Citrus clementina HOM05D001988 ORTHO05D006298 2.6e-35 152.9 461 31.0
FAN11G2867 Fragaria x ananassa HOM05D001988 ORTHO05D006298 4.4e-35 152.1 169 53.3
VMungo1127G1842 Vigna mungo HOM05D001988 ORTHO05D006298 1.7e-34 150.2 454 30.6
Dinv33543 Davidia involucrata HOM05D001988 ORTHO05D006298 2.2e-34 149.8 167 53.9
Peaxi162Scf00429g00122 Petunia axillaris HOM05D001988 ORTHO05D006298 2.2e-34 149.8 183 51.9
BraA09t41936Z Brassica rapa HOM05D001988 ORTHO05D019859 2.8e-34 149.4 194 51.0
Sc21g0006750 Simmondsia chinensis HOM05D001988 ORTHO05D006298 2.8e-34 149.4 444 31.3
C08p50020 Brassica napus HOM05D001988 ORTHO05D019859 6.3e-34 148.3 192 52.6
Nitab4.5_0002792g0050 Nicotiana tabacum HOM05D001988 ORTHO05D006298 8.3e-34 147.9 176 50.6
arahy.Tifrunner.gnm1.ann1.Q3UIYI Arachis hypogaea HOM05D001988 ORTHO05D006298 1.1e-33 147.5 174 50.0
ECA238G3826 Erigeron canadensis HOM05D001988 ORTHO05D006298 1.4e-33 147.1 171 54.4
QL01p019440 Quercus lobata HOM05D001988 ORTHO05D006298 1.4e-33 147.1 172 52.9
Actinidia07284 Actinidia chinensis HOM05D001988 ORTHO05D006298 1.8e-33 146.7 174 52.9
Gorai.006G116700 Gossypium raimondii HOM05D001988 ORTHO05D006298 1.8e-33 146.7 171 51.5
PGR119G1622 Punica granatum HOM05D001988 ORTHO05D006298 1.8e-33 146.7 452 30.5
FAN25G3604 Fragaria x ananassa HOM05D001988 ORTHO05D006298 2.4e-33 146.4 167 52.7
Aqoxy2G00626 Aquilegia oxysepala HOM05D001988 ORTHO05D006298 4.1e-33 145.6 454 30.4
arahy.Tifrunner.gnm1.ann1.JS7C8X Arachis hypogaea HOM05D001988 ORTHO05D006298 4.1e-33 145.6 174 49.4
AUR62020220 Chenopodium quinoa HOM05D001988 ORTHO05D006298 4.1e-33 145.6 466 30.0
Oeu051473.1 Olea europaea HOM05D001988 ORTHO05D006298 4.1e-33 145.6 173 50.9
Gohir.D09G099733 Gossypium hirsutum HOM05D001988 ORTHO05D006298 5.4e-33 145.2 171 50.9
CSS0034246 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D006298 9.1e-33 144.4 175 52.6
CANSAT54G0076 Cannabis sativa HOM05D001988 ORTHO05D006298 1.2e-32 144.1 162 51.9
Rhsim13G0196900 Rhododendron simsii HOM05D001988 ORTHO05D006298 1.2e-32 144.1 167 53.3
Nitab4.5_0007630g0020 Nicotiana tabacum HOM05D001988 ORTHO05D006298 1.6e-32 143.7 176 48.9
Cpa.g.sc103.19 Carica papaya HOM05D001988 ORTHO05D006298 2.0e-32 143.3 175 49.1
Phvul.011G099700 Phaseolus vulgaris HOM05D001988 ORTHO05D006298 2.0e-32 143.3 171 50.3
HanXRQChr14g0431711 Helianthus annuus HOM05D001988 ORTHO05D006298 2.7e-32 142.9 432 30.3
PGSC0003DMG400003001 Solanum tuberosum HOM05D001988 ORTHO05D006298 2.7e-32 142.9 182 50.0
EL10Ac7g16285 Beta vulgaris HOM05D001988 ORTHO05D006298 3.5e-32 142.5 463 29.2
MBI12_g38624_MAGBIO Magnolia biondii HOM05D001988 ORTHO05D006298 4.5e-32 142.1 430 31.2
Gohir.A09G100300 Gossypium hirsutum HOM05D001988 ORTHO05D006298 5.9e-32 141.7 171 49.1
Hund18799 Selenicereus undatus HOM05D001988 ORTHO05D006298 5.9e-32 141.7 176 51.1
Prupe.1G535500 Prunus persica HOM05D001988 ORTHO05D006298 7.7e-32 141.4 442 29.9
Sabra09G0009700 Salix brachista HOM05D001988 ORTHO05D006298 7.7e-32 141.4 177 50.8
Solyc11g071910.2 Solanum lycopersicum HOM05D001988 ORTHO05D006298 1.0e-31 141.0 186 48.4
vmacro03951 Vaccinium macrocarpon HOM05D001988 ORTHO05D006298 1.3e-31 140.6 167 52.7
Ca_02972_v3 Cicer arietinum L. HOM05D001988 ORTHO05D006298 1.7e-31 140.2 456 29.2
Potri.009G017000 Populus trichocarpa HOM05D001988 ORTHO05D006298 1.7e-31 140.2 177 49.7
SalBow3G3263 Salvia bowleyana HOM05D001988 ORTHO05D006298 2.9e-31 139.4 170 51.8
MSTRG.17675 Avicennia marina HOM05D001988 ORTHO05D006298 3.8e-31 139.0 174 48.3
CsaV3_1G015690 Cucumis sativus L. HOM05D001988 ORTHO05D006298 5.0e-31 138.7 172 50.6
Glyma.12G095400 Glycine max HOM05D001988 ORTHO05D006298 5.0e-31 138.7 176 49.4
Lalb_Chr03g0028461 Lupinus albus HOM05D001988 ORTHO05D006298 5.0e-31 138.7 174 48.3
TAR636G0458 Trochodendron aralioides HOM05D001988 ORTHO05D006298 5.0e-31 138.7 174 50.6
Dinv18851 Davidia involucrata HOM05D001988 ORTHO05D006298 6.5e-31 138.3 175 52.0
Lsat_1_v5_gn_2_35440 Lactuca sativa HOM05D001988 ORTHO05D006298 6.5e-31 138.3 430 29.8
Lj3g0025777 Lotus japonicus HOM05D001988 ORTHO05D006298 8.5e-31 137.9 172 50.0
Sopen11g029580 Solanum pennellii HOM05D001988 ORTHO05D006298 8.5e-31 137.9 184 48.4
TPR.G4623 Trifolium pratense HOM05D001988 ORTHO05D006298 8.5e-31 137.9 451 29.0
Nn6g34638 Nelumbo nucifera HOM05D001988 ORTHO05D006298 1.1e-30 137.5 458 29.3
MELO3C026106.2 Cucumis melo HOM05D001988 ORTHO05D006298 1.5e-30 137.1 171 49.7
AUR62001563 Chenopodium quinoa HOM05D001988 ORTHO05D006298 2.5e-30 136.3 173 51.4
Migut.G01069 Erythranthe guttata HOM05D001988 ORTHO05D006298 7.2e-30 134.8 183 48.1
Migut.N02439 Erythranthe guttata HOM05D001988 ORTHO05D006298 7.2e-30 134.8 200 45.0
CsaV3_4G030600 Cucumis sativus L. HOM05D001988 ORTHO05D006298 1.2e-29 134.0 169 48.5
ClCG04G002140 Citrullus lanatus HOM05D001988 ORTHO05D006298 1.6e-29 133.7 173 48.6
Zm00001eb031980 Zea mays HOM05D001988 ORTHO05D006298 1.6e-29 133.7 453 29.8
Sed0009678 Sechium edule HOM05D001988 ORTHO05D006298 3.6e-29 132.5 172 49.4
Glyma.11G175746 Glycine max HOM05D001988 ORTHO05D006298 6.1e-29 131.7 174 47.7
PSO339G1785 Papaver somniferum HOM05D001988 ORTHO05D006298 6.1e-29 131.7 447 29.3
unitig_699.g19173 Utricularia gibba HOM05D001988 ORTHO05D006298 8.0e-29 131.3 176 45.5
Os12g0618300 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D006298 1.4e-28 130.6 452 29.2
PSO384G2941 Papaver somniferum HOM05D001988 ORTHO05D006298 2.3e-28 129.8 447 29.3
Ah.15g092110 Amaranthus hybridus HOM05D001988 ORTHO05D006298 3.0e-28 129.4 457 28.7
ClCG01G010890 Citrullus lanatus HOM05D001988 ORTHO05D006298 3.0e-28 129.4 173 48.0
MELO3C008925.2 Cucumis melo HOM05D001988 ORTHO05D006298 8.8e-28 127.9 166 46.4
Medtr4g050490 Medicago truncatula HOM05D001988 ORTHO05D006298 1.2e-27 127.5 454 28.2
Glyma.13G312200 Glycine max HOM05D001988 ORTHO05D006298 5.7e-27 125.2 160 48.8
Thhalv10001955m.g Eutrema salsugineum HOM05D001988 ORTHO05D006298 3.7e-26 122.5 402 30.3
DCAR_006456 Daucus carota HOM05D001988 ORTHO05D006298 6.3e-26 121.7 177 45.8
Sed0023260 Sechium edule HOM05D001988 ORTHO05D006298 1.1e-25 120.9 167 47.3
SGA_v2.0_scaffold268G46203 Striga asiatica HOM05D001988 ORTHO05D006298 2.4e-25 119.8 405 29.1
CDE06G0259 Ceratophyllum demersum HOM05D001988 ORTHO05D006298 3.1e-25 119.4 447 27.7
Glyma.12G189600 Glycine max HOM05D001988 ORTHO05D006298 7.0e-25 118.2 152 49.3
A04p20690 Brassica napus HOM05D001988 ORTHO05D006298 4.5e-24 115.5 400 30.5
Sp4g10000 Schrenkiella parvula HOM05D001988 ORTHO05D006298 5.9e-24 115.2 414 29.7
Aa31LG5G8630 Aethionema arabicum HOM05D001988 ORTHO05D006298 1.3e-23 114.0 409 28.4
BcaB06g28123 Brassica carinata HOM05D001988 ORTHO05D006298 3.8e-23 112.5 408 29.7
Cc01_g07790 Coffea canephora HOM05D001988 ORTHO05D006298 5.0e-23 112.1 151 47.7
Lj2A953T34 Lonicera japonica HOM05D001988 ORTHO05D006298 6.6e-23 111.7 159 49.1
CARHR119700 Cardamine hirsuta HOM05D001988 ORTHO05D006298 5.6e-22 108.6 118 57.6
Lalb_Chr19g0136211 Lupinus albus HOM05D001988 ORTHO05D006298 1.0e-20 104.4 143 46.2
Gohir.D09G099700 Gossypium hirsutum HOM05D001988 ORTHO05D006298 5.2e-20 102.1 79 70.9
Gohir.D09G099766 Gossypium hirsutum HOM05D001988 ORTHO05D006298 5.2e-20 102.1 79 70.9
Os03g0647500 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D019859 5.2e-20 102.1 79 68.4
ATR0006G002 Amborella trichopoda HOM05D001988 ORTHO05D006298 6.8e-20 101.7 79 69.6
AL4G21100 Arabidopsis lyrata HOM05D001988 ORTHO05D006298 1.5e-19 100.5 81 66.7
AT2G27200 Arabidopsis thaliana HOM05D001988 ORTHO05D006298 1.5e-19 100.5 81 66.7
Actinidia37501 Actinidia chinensis HOM05D001988 ORTHO05D006298 2.0e-19 100.1 75 68.0
Carub.0004s0777 Capsella rubella HOM05D001988 ORTHO05D006298 2.0e-19 100.1 81 66.7
Actinidia24258 Actinidia chinensis HOM05D001988 ORTHO05D006298 9.8e-19 97.8 79 65.8
GSVIVG01037592001 Vitis vinifera HOM05D001988 ORTHO05D006298 1.7e-18 97.1 57 84.2
BcaC07g41945 Brassica carinata HOM05D001988 ORTHO05D019859 2.9e-18 96.3 60 83.3
Psat7g204840 Pisum sativum HOM05D001988 ORTHO05D006298 2.9e-18 96.3 461 25.8
HPP92_017674 Vanilla planifolia HOM05D001988 ORTHO05D006298 6.4e-18 95.1 98 56.1
SMO174G0010 Selaginella moellendorffii HOM05D001988 ORTHO05D006298 8.3e-18 94.7 61 73.8
BcaC02g08272 Brassica carinata HOM05D001988 ORTHO05D006298 1.4e-17 94.0 178 42.1
C04p56520 Brassica napus HOM05D001988 ORTHO05D006298 1.4e-17 94.0 178 42.1
BolC4t27178H Brassica oleracea HOM05D001988 ORTHO05D006298 1.4e-17 94.0 178 42.1
BraA04t17642Z Brassica rapa HOM05D001988 ORTHO05D006298 1.8e-17 93.6 178 42.1
Mapoly0045s0113 Marchantia polymorpha HOM05D001988 ORTHO05D006298 3.2e-17 92.8 97 52.6
Pp3c3_21040 Physcomitrium patens HOM05D001988 ORTHO05D006298 7.0e-17 91.7 129 48.1
AagrBONN_evm.TU.Sc2ySwM_344.3830 Anthoceros agrestis HOM05D001988 ORTHO05D006298 2.0e-16 90.1 199 36.2
CBR_g32036 Chara braunii HOM05D001988 ORTHO05D006298 2.0e-16 90.1 108 50.0
MCO12G197 Micromonas commoda HOM05D001988 ORTHO05D006298 2.7e-16 89.7 98 54.1
HPP92_017697 Vanilla planifolia HOM05D001988 ORTHO05D006298 5.9e-16 88.6 167 41.9
SEGI_23026 Sequoiadendron giganteum HOM05D001988 ORTHO05D006298 7.8e-16 88.2 165 40.6
Cre16.g680944 Chlamydomonas reinhardtii HOM05D001988 ORTHO05D006298 1.5e-14 84.0 109 47.7
CSS0044690 Camellia sinensis var. sinensis HOM05D001988 ORTHO05D019859 7.3e-14 81.6 80 60.0
Cfa024445 Carpinus fangiana HOM05D001988 ORTHO05D006298 4.4e-11 72.4 56 57.1
PRCOL_00001880 Prasinoderma coloniale HOM05D001988 ORTHO05D006298 5.8e-11 72.0 95 45.3
BcaC03g16925 Brassica carinata HOM05D001988 ORTHO05D039682 2.2e-10 70.1 63 60.3
Glyma.07G176900 Glycine max HOM05D001988 ORTHO05D006298 2.4e-09 66.6 32 93.8
Os05g0580800 Oryza sativa ssp. japonica HOM05D001988 ORTHO05D301116 2.4e-09 66.6 34 85.3
C02p48260 Brassica napus HOM05D001988 ORTHO05D039682 5.0e-07 58.9 28 92.9


User provided reference genes

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