Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p65830 Brassica napus HOM05D000104 ORTHO05D006397 0.0e+00 1100.9 583 100.0
BraA09t41927Z Brassica rapa HOM05D000104 ORTHO05D006397 0.0e+00 1095.9 585 99.7
C08p49920 Brassica napus HOM05D000104 ORTHO05D006397 3.3e-224 781.9 790 61.4
BolC8t52520H Brassica oleracea HOM05D000104 ORTHO05D006397 9.0e-222 773.9 823 59.5
BcaB07g34102 Brassica carinata HOM05D000104 ORTHO05D006397 1.3e-148 530.8 457 67.6
C05p06690 Brassica napus HOM05D000104 ORTHO05D006397 1.3e-148 530.8 457 67.6
BolC5t29429H Brassica oleracea HOM05D000104 ORTHO05D006397 2.3e-148 530.0 457 67.6
Sp1g07260 Schrenkiella parvula HOM05D000104 ORTHO05D006397 6.6e-148 528.5 416 70.7
A06p05580 Brassica napus HOM05D000329 ORTHO05D006397 4.3e-147 525.8 469 66.3
BraA06t23766Z Brassica rapa HOM05D000329 ORTHO05D006397 9.5e-147 524.6 469 66.1
Thhalv10006555m.g Eutrema salsugineum HOM05D000104 ORTHO05D006397 1.7e-140 503.8 416 68.0
AT1G08600 Arabidopsis thaliana HOM05D000104 ORTHO05D006397 8.6e-140 501.5 406 70.2
AL1G19030 Arabidopsis lyrata HOM05D000104 ORTHO05D006397 4.9e-135 485.7 406 68.2
Aa31sc449G60 Aethionema arabicum HOM05D000104 ORTHO05D006397 2.0e-128 463.8 414 65.0
Carub.0001s0796 Capsella rubella HOM05D000104 ORTHO05D006397 1.7e-119 434.1 352 68.8
THA.LOC104805785 Tarenaya hassleriana HOM05D000104 ORTHO05D006397 3.5e-117 426.4 422 59.7
BcaC07g41936 Brassica carinata HOM05D000104 ORTHO05D006397 7.9e-117 425.2 267 89.9
Dinv12942 Davidia involucrata HOM05D000104 ORTHO05D006397 1.6e-90 337.8 334 57.2
Gohir.A11G245400 Gossypium hirsutum HOM05D000104 ORTHO05D006397 3.7e-90 336.7 389 52.2
TWI60G0140 Tripterygium wilfordii HOM05D000104 ORTHO05D006397 3.7e-90 336.7 339 57.5
Gohir.D11G255300 Gossypium hirsutum HOM05D000104 ORTHO05D006397 8.2e-90 335.5 386 52.8
Gorai.007G273900 Gossypium raimondii HOM05D000104 ORTHO05D006397 1.1e-89 335.1 386 52.8
Manes.09G147000 Manihot esculenta HOM05D000104 ORTHO05D006397 1.1e-89 335.1 345 55.9
TAR362G0360 Trochodendron aralioides HOM05D000104 ORTHO05D006397 1.4e-89 334.7 360 54.2
CARHR008500 Cardamine hirsuta HOM05D000104 ORTHO05D006397 6.9e-89 332.4 259 70.7
Ciclev10030509m.g Citrus clementina HOM05D000104 ORTHO05D006397 2.2e-87 327.4 344 53.5
Sabra19G0033000 Salix brachista HOM05D000104 ORTHO05D006397 2.2e-87 327.4 393 49.1
Potri.013G048500 Populus trichocarpa HOM05D000104 ORTHO05D006397 1.9e-86 324.3 392 50.3
QL03p029602 Quercus lobata HOM05D000104 ORTHO05D006397 4.2e-86 323.2 367 52.0
CiPaw.08G118700 Carya illinoinensis HOM05D000104 ORTHO05D006397 5.5e-86 322.8 408 49.5
Thecc.05G267600 Theobroma cacao HOM05D000104 ORTHO05D006397 5.5e-86 322.8 480 46.5
Potri.019G021500 Populus trichocarpa HOM05D000104 ORTHO05D006397 7.2e-86 322.4 393 49.6
CANSAT54G2768 Cannabis sativa HOM05D000104 ORTHO05D006397 4.6e-85 319.7 369 51.5
MD00G1149200 Malus domestica HOM05D000104 ORTHO05D006397 4.6e-85 319.7 410 50.5
FvH4_6g01581 Fragaria vesca HOM05D000104 ORTHO05D006397 1.4e-84 318.2 333 55.9
GSVIVG01023393001 Vitis vinifera HOM05D000104 ORTHO05D006397 1.8e-84 317.8 372 50.5
CsaV3_2G009970 Cucumis sativus L. HOM05D000104 ORTHO05D006397 2.3e-84 317.4 343 53.9
PGR004G1676 Punica granatum HOM05D000104 ORTHO05D006397 2.3e-84 317.4 345 53.3
Eucgr.H04218 Eucalyptus grandis HOM05D000104 ORTHO05D006397 6.7e-84 315.8 344 52.0
arahy.Tifrunner.gnm1.ann1.21AGFE Arachis hypogaea HOM05D000104 ORTHO05D006397 8.8e-84 315.5 335 56.1
ECA238G2794 Erigeron canadensis HOM05D000104 ORTHO05D006397 8.8e-84 315.5 394 48.7
Duzib128G0174 Durio zibethinus HOM05D000104 ORTHO05D006397 2.0e-83 314.3 394 50.0
FAN09G4154 Fragaria x ananassa HOM05D000104 ORTHO05D006397 3.3e-83 313.5 333 55.3
Prupe.6G351600 Prunus persica HOM05D000104 ORTHO05D006397 3.3e-83 313.5 379 50.7
Ca_10025_v3 Cicer arietinum L. HOM05D000104 ORTHO05D006397 4.4e-83 313.2 411 48.7
MELO3C008639.2 Cucumis melo HOM05D000104 ORTHO05D006397 4.4e-83 313.2 349 53.3
MD04G1232200 Malus domestica HOM05D000104 ORTHO05D006397 5.7e-83 312.8 420 48.8
FAN14G5045 Fragaria x ananassa HOM05D000104 ORTHO05D006397 9.7e-83 312.0 315 56.8
FAN02G0967 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.8e-82 310.5 312 57.7
RcHm_v2.0_Chr3g0449401 Rosa chinensis HOM05D000104 ORTHO05D006397 3.7e-82 310.1 355 53.0
VMungo0720G2029 Vigna mungo HOM05D000104 ORTHO05D006397 4.8e-82 309.7 331 54.4
arahy.Tifrunner.gnm1.ann1.N8MZL6 Arachis hypogaea HOM05D000104 ORTHO05D006397 1.8e-81 307.8 415 49.6
FAN05G1722 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.4e-81 307.4 381 50.4
Glyma.10G165000 Glycine max HOM05D000104 ORTHO05D006397 2.4e-81 307.4 331 54.1
Actinidia34760 Actinidia chinensis HOM05D000104 ORTHO05D006397 3.1e-81 307.0 466 44.2
Lalb_Chr06g0168221 Lupinus albus HOM05D000104 ORTHO05D006397 3.1e-81 307.0 408 48.0
Medtr1g080420 Medicago truncatula HOM05D000104 ORTHO05D006397 4.1e-81 306.6 313 55.0
HanXRQChr11g0327241 Helianthus annuus HOM05D000104 ORTHO05D006397 9.1e-81 305.4 420 46.9
FAN05G2560 Fragaria x ananassa HOM05D000104 ORTHO05D006397 1.2e-80 305.1 381 50.1
Sc09g0001860 Simmondsia chinensis HOM05D000104 ORTHO05D006397 1.5e-80 304.7 316 52.8
CDE02G4509 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 5.9e-80 302.8 356 50.8
Rhsim09G0133300 Rhododendron simsii HOM05D000104 ORTHO05D006397 5.9e-80 302.8 419 45.6
Psat6g144360 Pisum sativum HOM05D000104 ORTHO05D006397 7.7e-80 302.4 422 46.2
TPR.G26620 Trifolium pratense HOM05D000104 ORTHO05D006397 7.7e-80 302.4 406 47.8
Sopen04g020860 Solanum pennellii HOM05D000104 ORTHO05D006397 1.3e-79 301.6 308 52.6
vmacro10381 Vaccinium macrocarpon HOM05D000104 ORTHO05D006397 1.3e-79 301.6 373 48.5
Nn1g02987 Nelumbo nucifera HOM05D000104 ORTHO05D006397 2.2e-79 300.8 309 54.4
Lsat_1_v5_gn_2_15881 Lactuca sativa HOM05D000104 ORTHO05D006397 2.9e-79 300.4 329 52.9
Phvul.L001951 Phaseolus vulgaris HOM05D000104 ORTHO05D006397 2.9e-79 300.4 331 53.5
Atru.chr2.1068 Acer truncatum HOM05D000104 ORTHO05D006397 3.8e-79 300.1 459 42.3
Glyma.20G227200 Glycine max HOM05D000104 ORTHO05D006397 5.0e-79 299.7 331 53.2
unitig_37.g12285 Utricularia gibba HOM05D000104 ORTHO05D006397 1.1e-78 298.5 295 54.6
CSS0004215 Camellia sinensis var. sinensis HOM05D000104 ORTHO05D006397 1.9e-78 297.7 389 47.6
Sabra13G0044700 Salix brachista HOM05D000104 ORTHO05D006397 4.2e-78 296.6 419 46.3
Lj5g0000218 Lotus japonicus HOM05D000104 ORTHO05D006397 7.2e-78 295.8 399 46.9
ClCG11G010390 Citrullus lanatus HOM05D000104 ORTHO05D006397 9.4e-78 295.4 284 57.7
Migut.F02058 Erythranthe guttata HOM05D000104 ORTHO05D006397 4.7e-77 293.1 387 47.3
MSTRG.27435 Avicennia marina HOM05D000104 ORTHO05D006397 1.1e-75 288.5 365 46.6
COL.COLO4_15520 Corchorus olitorius HOM05D000104 ORTHO05D006397 1.1e-75 288.5 390 47.4
EL10Ac4g09754 Beta vulgaris HOM05D000104 ORTHO05D006397 2.6e-75 287.3 482 42.1
Ah.02g118350 Amaranthus hybridus HOM05D000104 ORTHO05D006397 5.7e-75 286.2 347 50.7
DCAR_028378 Daucus carota HOM05D000104 ORTHO05D006397 1.7e-74 284.6 299 54.2
ATR0787G043 Amborella trichopoda HOM05D000104 ORTHO05D006397 6.3e-74 282.7 318 51.9
HPP92_015192 Vanilla planifolia HOM05D000104 ORTHO05D006397 8.2e-74 282.3 380 46.6
Nitab4.5_0000061g0050 Nicotiana tabacum HOM05D000104 ORTHO05D006397 4.1e-73 280.0 309 51.1
SalBow1G3403 Salvia bowleyana HOM05D000104 ORTHO05D006397 4.5e-72 276.6 329 49.8
PSO764G0152 Papaver somniferum HOM05D000104 ORTHO05D006397 6.5e-71 272.7 371 46.1
AUR62006982 Chenopodium quinoa HOM05D000104 ORTHO05D006397 8.5e-71 272.3 334 50.6
Aqoxy5G00143 Aquilegia oxysepala HOM05D000104 ORTHO05D006397 4.2e-70 270.0 450 40.4
SGA_v2.0_scaffold62G21465 Striga asiatica HOM05D000104 ORTHO05D006397 3.6e-69 266.9 275 55.6
Sed0014493 Sechium edule HOM05D000104 ORTHO05D006397 8.0e-69 265.8 263 57.4
Nitab4.5_0002088g0030 Nicotiana tabacum HOM05D000104 ORTHO05D006397 3.0e-68 263.8 287 51.6
Migut.F01812 Erythranthe guttata HOM05D000104 ORTHO05D006397 2.2e-66 257.7 270 52.2
Cpa.g.sc51.11 Carica papaya HOM05D000104 ORTHO05D006397 1.8e-65 254.6 274 52.6
Lj2A45G39 Lonicera japonica HOM05D000104 ORTHO05D006397 1.8e-65 254.6 227 59.0
Hund07179 Selenicereus undatus HOM05D000104 ORTHO05D006397 4.1e-65 253.4 343 45.8
Cc09_g02930 Coffea canephora HOM05D000104 ORTHO05D006397 7.0e-65 252.7 451 42.6
FAN14G4089 Fragaria x ananassa HOM05D000104 ORTHO05D006397 2.0e-64 251.1 254 55.1
Solyc04g050160.4 Solanum lycopersicum HOM05D000104 ORTHO05D006397 3.5e-64 250.4 234 56.0
Os10g0457700 Oryza sativa ssp. japonica HOM05D000104 ORTHO05D006397 2.9e-63 247.3 334 47.0
Actinidia38931 Actinidia chinensis HOM05D000104 ORTHO05D006397 2.0e-56 224.6 356 41.3
Haze_04401 Corylus avellana HOM05D000104 ORTHO05D006397 4.2e-54 216.9 303 44.6
SEGI_02699 Sequoiadendron giganteum HOM05D000104 ORTHO05D006397 4.2e-54 216.9 290 47.2
Zm00001eb046650 Zea mays HOM05D000104 ORTHO05D006397 1.2e-53 215.3 461 38.6
Peaxi162Scf00373g01416 Petunia axillaris HOM05D000104 ORTHO05D006397 1.0e-52 212.2 226 52.7
SMO115G0122 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 7.0e-49 199.5 368 38.9
CAN.G29.15 Capsicum annuum HOM05D000104 ORTHO05D006397 2.8e-45 187.6 240 46.2
Mapoly0058s0081 Marchantia polymorpha HOM05D000104 ORTHO05D006397 4.7e-45 186.8 295 41.0
CARHR008510 Cardamine hirsuta HOM05D000104 ORTHO05D006397 2.3e-44 184.5 179 57.0
SHI15632 Sapria himalayana HOM05D000104 ORTHO05D006397 8.9e-44 182.6 293 40.6
SMO340G0266 Selaginella moellendorffii HOM05D000104 ORTHO05D006397 3.0e-39 167.5 247 40.9
Pp3c14_22150 Physcomitrium patens HOM05D000104 ORTHO05D006397 3.3e-38 164.1 378 33.6
AagrBONN_evm.TU.Sc2ySwM_344.2543 Anthoceros agrestis HOM05D000104 ORTHO05D006397 1.7e-34 151.8 298 34.6
AagrBONN_evm.TU.Sc2ySwM_368.1354 Anthoceros agrestis HOM05D002647 ORTHO05D002935 2.0e-32 144.8 272 38.2
Sed0024552 Sechium edule HOM05D000104 ORTHO05D006397 3.5e-32 144.1 137 53.3
SMO240G0025 Selaginella moellendorffii HOM05D059233 ORTHO05D006397 6.0e-32 143.3 250 39.2
CDE09G0961 Ceratophyllum demersum HOM05D000104 ORTHO05D006397 1.5e-30 138.7 190 50.0
AagrBONN_evm.TU.Sc2ySwM_368.1355 Anthoceros agrestis HOM05D000104 ORTHO05D006397 3.3e-30 137.5 317 35.6
VMungo0720G0899 Vigna mungo HOM05D000104 ORTHO05D006397 1.5e-27 128.6 181 42.0
Cpa.g.sc51.15 Carica papaya HOM05D000104 ORTHO05D006397 7.5e-27 126.3 137 48.9
CBR_g50040 Chara braunii HOM05D000104 ORTHO05D006397 3.5e-24 117.5 260 34.6
AUR62000629 Chenopodium quinoa HOM05D000104 ORTHO05D006397 8.6e-23 112.8 169 40.2
CDE09G0386 Ceratophyllum demersum HOM05D000104 ORTHO05D028698 1.1e-22 112.5 138 43.5
Solyc04g050150.4 Solanum lycopersicum HOM05D000104 ORTHO05D006397 1.9e-22 111.7 200 38.5
Peaxi162Scf00373g01415 Petunia axillaris HOM05D000104 ORTHO05D006397 4.7e-21 107.1 269 32.7
Nn1g02977 Nelumbo nucifera HOM05D000104 ORTHO05D006397 3.1e-20 104.4 212 34.9
ECA238G3223 Erigeron canadensis HOM05D000104 ORTHO05D006397 4.9e-18 97.1 189 34.4
Lj2C45G10 Lonicera japonica HOM05D000104 ORTHO05D006397 1.2e-16 92.4 278 29.1
Actinidia38932 Actinidia chinensis HOM05D000104 ORTHO05D006397 1.1e-12 79.3 138 37.0
SalBow4G2470 Salvia bowleyana HOM05D017717 ORTHO05D006397 9.0e-12 76.3 59 59.3
QL03p029625 Quercus lobata HOM05D000104 ORTHO05D028698 1.3e-10 72.4 120 38.3
FAN16G3191 Fragaria x ananassa HOM05D000104 ORTHO05D019205 1.9e-06 58.5 85 44.7
FAN15G0988 Fragaria x ananassa HOM05D000104 ORTHO05D019205 2.5e-06 58.2 123 36.6


User provided reference genes

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