Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p56510 Brassica napus HOM05D002292 ORTHO05D012147 3.6e-122 441.8 256 100.0
BolC3t16989H Brassica oleracea HOM05D002292 ORTHO05D012147 2.0e-85 319.7 245 75.9
BolC7t43283H Brassica oleracea HOM05D002292 ORTHO05D012147 1.7e-84 316.6 245 75.5
C07p27520 Brassica napus HOM05D002292 ORTHO05D012147 3.8e-84 315.5 242 76.0
A01p22400 Brassica napus HOM05D002292 ORTHO05D012147 1.4e-81 307.0 244 75.0
A02p31100 Brassica napus HOM05D002292 ORTHO05D012147 3.7e-79 298.9 242 72.7
BcaC06g34529 Brassica carinata HOM05D002292 ORTHO05D012147 3.4e-72 275.8 244 70.1
BcaC05g28124 Brassica carinata HOM05D002292 ORTHO05D012147 9.2e-70 267.7 229 70.3
BraA02t06265Z Brassica rapa HOM05D002292 ORTHO05D012147 6.2e-42 175.3 167 68.3
BcaC01g03915 Brassica carinata HOM05D002292 ORTHO05D012147 7.9e-37 158.3 230 50.0
C02p31010 Brassica napus HOM05D005083 ORTHO05D012147 7.9e-37 158.3 160 76.2
A08p20450 Brassica napus HOM05D002105 ORTHO05D001271 3.9e-20 102.8 125 58.4
BraA08t34001Z Brassica rapa HOM05D002105 ORTHO05D001271 1.1e-19 101.3 125 57.6
BcaC07g38286 Brassica carinata HOM05D002105 ORTHO05D012147 1.9e-19 100.5 125 57.6
C08p10310 Brassica napus HOM05D002105 ORTHO05D001271 1.9e-19 100.5 125 57.6
BolC8t48712H Brassica oleracea HOM05D002105 ORTHO05D001271 1.9e-19 100.5 125 57.6
BcaB03g12536 Brassica carinata HOM05D002105 ORTHO05D001271 1.0e-15 88.2 123 52.0
BcaC06g32618 Brassica carinata HOM05D002292 ORTHO05D003256 1.1e-14 84.7 71 64.8
A03p58120 Brassica napus HOM05D002292 ORTHO05D003256 1.1e-14 84.7 71 64.8
C07p56240 Brassica napus HOM05D002292 ORTHO05D003256 1.1e-14 84.7 71 64.8
BraA03t14878Z Brassica rapa HOM05D002292 ORTHO05D003256 1.1e-14 84.7 71 64.8
C05p41580 Brassica napus HOM05D002292 ORTHO05D012147 1.9e-14 84.0 242 36.0
BolC7t46102H Brassica oleracea HOM05D002292 ORTHO05D003256 2.5e-14 83.6 71 64.8
Thhalv10024363m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 2.5e-14 83.6 71 63.4
BcaNung01564 Brassica carinata HOM05D002292 ORTHO05D003256 5.5e-14 82.4 71 63.4
BolC1t01065H Brassica oleracea HOM05D002292 ORTHO05D003256 7.9e-13 78.6 71 60.6
Sp7g26440 Schrenkiella parvula HOM05D002292 ORTHO05D003256 1.0e-12 78.2 71 60.6
BcaC09g51648 Brassica carinata HOM05D002292 ORTHO05D003256 1.8e-12 77.4 71 59.2
A01p09480 Brassica napus HOM05D002292 ORTHO05D003256 1.8e-12 77.4 71 59.2
C01p11030 Brassica napus HOM05D002292 ORTHO05D003256 1.8e-12 77.4 71 59.2
BraA01t00890Z Brassica rapa HOM05D002292 ORTHO05D003256 1.8e-12 77.4 71 59.2
BcaC07g38333 Brassica carinata HOM05D002292 ORTHO05D003256 6.7e-12 75.5 50 70.0
C08p10870 Brassica napus HOM05D002292 ORTHO05D003256 6.7e-12 75.5 50 70.0
BolC8t48762H Brassica oleracea HOM05D002292 ORTHO05D003256 6.7e-12 75.5 50 70.0
BcaB03g12574 Brassica carinata HOM05D002292 ORTHO05D003256 1.1e-11 74.7 73 54.8
Aa31LG2G21960 Aethionema arabicum HOM05D002292 ORTHO05D003256 2.0e-11 73.9 74 54.1
arahy.Tifrunner.gnm1.ann1.ULM3VA Arachis hypogaea HOM05D002292 ORTHO05D003256 2.5e-11 73.6 77 51.9
arahy.Tifrunner.gnm1.ann1.WEN01S Arachis hypogaea HOM05D002292 ORTHO05D003256 2.5e-11 73.6 77 51.9
A08p20050 Brassica napus HOM05D002292 ORTHO05D003256 2.5e-11 73.6 50 68.0
BraA08t33964Z Brassica rapa HOM05D002292 ORTHO05D003256 2.5e-11 73.6 74 54.1
Glyma.06G289400 Glycine max HOM05D002292 ORTHO05D003256 2.5e-11 73.6 71 56.3
Carub.0003s3506 Capsella rubella HOM05D002292 ORTHO05D003256 3.3e-11 73.2 71 54.9
Carub.0007s1223 Capsella rubella HOM05D002292 ORTHO05D003256 3.3e-11 73.2 38 86.8
CARHR236240 Cardamine hirsuta HOM05D002292 ORTHO05D003256 3.3e-11 73.2 53 64.2
Nn1g00672 Nelumbo nucifera HOM05D002292 ORTHO05D003256 5.7e-11 72.4 74 51.4
Sabra17G0012000 Salix brachista HOM05D002292 ORTHO05D003256 5.7e-11 72.4 75 53.3
AT4G28470 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 7.4e-11 72.0 72 54.2
AL7G24090 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 9.7e-11 71.6 72 55.6
BraA03t14760Z Brassica rapa HOM05D002105 ORTHO05D012147 9.7e-11 71.6 115 50.4
CSS0001743 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 9.7e-11 71.6 58 60.3
CARHR111150 Cardamine hirsuta HOM05D002292 ORTHO05D003256 9.7e-11 71.6 38 84.2
Cc05_g07700 Coffea canephora HOM05D002292 ORTHO05D003256 9.7e-11 71.6 71 53.5
Phvul.L001621 Phaseolus vulgaris HOM05D002292 ORTHO05D003256 9.7e-11 71.6 71 54.9
Potri.017G014800 Populus trichocarpa HOM05D002292 ORTHO05D003256 1.3e-10 71.2 74 52.7
THA.LOC104804050 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 1.3e-10 71.2 71 54.9
Sp3g33820 Schrenkiella parvula HOM05D002292 ORTHO05D003256 1.7e-10 70.9 71 53.5
Sed0000760 Sechium edule HOM05D002292 ORTHO05D003256 1.7e-10 70.9 71 53.5
Sed0014471 Sechium edule HOM05D002292 ORTHO05D003256 1.7e-10 70.9 71 53.5
TPR.G5998 Trifolium pratense HOM05D002292 ORTHO05D003256 1.7e-10 70.9 71 54.9
Manes.13G142400 Manihot esculenta HOM05D002292 ORTHO05D003256 2.2e-10 70.5 73 53.4
Psat4g001960 Pisum sativum HOM05D002292 ORTHO05D003256 2.2e-10 70.5 76 52.6
PGR142G0833 Punica granatum HOM05D002292 ORTHO05D003256 2.2e-10 70.5 71 53.5
CsaV3_7G003090 Cucumis sativus L. HOM05D002292 ORTHO05D003256 2.8e-10 70.1 41 78.0
Duzib248G0284 Durio zibethinus HOM05D002292 ORTHO05D003256 2.8e-10 70.1 71 54.9
Eucgr.K01053 Eucalyptus grandis HOM05D002292 ORTHO05D003256 2.8e-10 70.1 71 53.5
Glyma.12G117600 Glycine max HOM05D002292 ORTHO05D003256 2.8e-10 70.1 71 53.5
Medtr4g078780 Medicago truncatula HOM05D002292 ORTHO05D003256 2.8e-10 70.1 71 53.5
VMungo1127G1900 Vigna mungo HOM05D002292 ORTHO05D003256 2.8e-10 70.1 71 53.5
ATR0691G112 Amborella trichopoda HOM05D002292 ORTHO05D003256 3.7e-10 69.7 39 79.5
AL7G25270 Arabidopsis lyrata HOM05D002105 ORTHO05D001271 3.7e-10 69.7 121 65.3
EL10Ac9g20812 Beta vulgaris HOM05D002292 ORTHO05D003256 3.7e-10 69.7 38 84.2
BcaC06g36750 Brassica carinata HOM05D002292 ORTHO05D003256 3.7e-10 69.7 53 62.3
C07p00430 Brassica napus HOM05D002292 ORTHO05D003256 3.7e-10 69.7 53 62.3
BolC7t40489H Brassica oleracea HOM05D002292 ORTHO05D003256 3.7e-10 69.7 53 62.3
AUR62036052 Chenopodium quinoa HOM05D002292 ORTHO05D003256 3.7e-10 69.7 38 84.2
AUR62038984 Chenopodium quinoa HOM05D002292 ORTHO05D003256 3.7e-10 69.7 38 84.2
Ca_18922_v3 Cicer arietinum L. HOM05D002292 ORTHO05D003256 3.7e-10 69.7 71 53.5
MELO3C018868.2 Cucumis melo HOM05D002292 ORTHO05D003256 3.7e-10 69.7 38 84.2
Gohir.A01G019500 Gossypium hirsutum HOM05D002292 ORTHO05D003256 3.7e-10 69.7 71 54.9
Gohir.D01G018000 Gossypium hirsutum HOM05D002292 ORTHO05D003256 3.7e-10 69.7 71 54.9
Gorai.002G020200 Gossypium raimondii HOM05D002292 ORTHO05D003256 3.7e-10 69.7 71 54.9
Nn6g33691 Nelumbo nucifera HOM05D002292 ORTHO05D003256 3.7e-10 69.7 38 84.2
Potri.007G137200 Populus trichocarpa HOM05D002292 ORTHO05D003256 3.7e-10 69.7 38 84.2
AL3G53630 Arabidopsis lyrata HOM05D002292 ORTHO05D003256 4.8e-10 69.3 71 52.1
BcaB03g16854 Brassica carinata HOM05D002292 ORTHO05D003256 4.8e-10 69.3 38 81.6
Ciclev10014210m.g Citrus clementina HOM05D002292 ORTHO05D003256 4.8e-10 69.3 71 52.1
ECA246G1445 Erigeron canadensis HOM05D002292 ORTHO05D003256 4.8e-10 69.3 70 54.3
Rhsim06G0137300 Rhododendron simsii HOM05D002292 ORTHO05D003256 4.8e-10 69.3 130 39.2
COL.COLO4_18044 Corchorus olitorius HOM05D002292 ORTHO05D003256 6.3e-10 68.9 71 53.5
ECA232G1044 Erigeron canadensis HOM05D002292 ORTHO05D003256 6.3e-10 68.9 70 54.3
PSO210G1937 Papaver somniferum HOM05D002292 ORTHO05D003256 6.3e-10 68.9 81 46.9
GSVIVG01020602001 Vitis vinifera HOM05D002292 ORTHO05D003256 6.3e-10 68.9 71 53.5
AT2G20580 Arabidopsis thaliana HOM05D002292 ORTHO05D003256 8.2e-10 68.6 71 52.1
Migut.M00151 Erythranthe guttata HOM05D002292 ORTHO05D003256 8.2e-10 68.6 71 52.1
Psat7g137480 Pisum sativum HOM05D002292 ORTHO05D003256 8.2e-10 68.6 71 52.1
TPR.G9354 Trifolium pratense HOM05D002292 ORTHO05D003256 8.2e-10 68.6 71 52.1
Atru.chr6.2873 Acer truncatum HOM05D002292 ORTHO05D003256 1.1e-09 68.2 74 50.0
Cfa023332 Carpinus fangiana HOM05D002292 ORTHO05D003256 1.1e-09 68.2 71 52.1
Duzib052G0792 Durio zibethinus HOM05D002292 ORTHO05D003256 1.1e-09 68.2 71 53.5
Thhalv10001903m.g Eutrema salsugineum HOM05D002292 ORTHO05D003256 1.1e-09 68.2 41 75.6
Lj8C108T4 Lonicera japonica HOM05D002292 ORTHO05D003256 1.1e-09 68.2 71 52.1
Lj3g0005030 Lotus japonicus HOM05D002292 ORTHO05D003256 1.1e-09 68.2 41 75.6
Prupe.3G134800 Prunus persica HOM05D002292 ORTHO05D003256 1.1e-09 68.2 71 52.1
CiPaw.03G181100 Carya illinoinensis HOM05D002292 ORTHO05D003256 1.4e-09 67.8 38 81.6
Dinv01517 Davidia involucrata HOM05D002292 ORTHO05D003256 1.4e-09 67.8 38 81.6
Dinv10166 Davidia involucrata HOM05D002292 ORTHO05D003256 1.4e-09 67.8 38 81.6
HanXRQChr17g0541921 Helianthus annuus HOM05D002292 ORTHO05D003256 1.4e-09 67.8 70 52.9
Lalb_Chr19g0135111 Lupinus albus HOM05D002292 ORTHO05D003256 1.4e-09 67.8 71 52.1
Os06g0699900 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 1.4e-09 67.8 71 50.7
Sc21g0003680 Simmondsia chinensis HOM05D002292 ORTHO05D003256 1.4e-09 67.8 71 52.1
Thecc.02G185600 Theobroma cacao HOM05D002292 ORTHO05D003256 1.4e-09 67.8 71 53.5
TWI14G1271 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 1.4e-09 67.8 38 81.6
Aa31LG8G13530 Aethionema arabicum HOM05D002292 ORTHO05D003256 1.8e-09 67.4 71 53.5
Aqoxy4G01267 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 1.8e-09 67.4 53 60.4
Lalb_Chr03g0029631 Lupinus albus HOM05D002292 ORTHO05D003256 1.8e-09 67.4 71 52.1
PSO339G0848 Papaver somniferum HOM05D002292 ORTHO05D003256 1.8e-09 67.4 38 78.9
PSO384G0954 Papaver somniferum HOM05D002292 ORTHO05D003256 1.8e-09 67.4 38 78.9
SEGI_41616 Sequoiadendron giganteum HOM05D002292 ORTHO05D003256 1.8e-09 67.4 74 45.9
Zm00001eb208050 Zea mays HOM05D002292 ORTHO05D003256 1.8e-09 67.4 71 52.1
Zm00001eb232220 Zea mays HOM05D002292 ORTHO05D003256 1.8e-09 67.4 71 52.1
CANSAT64G2461 Cannabis sativa HOM05D002292 ORTHO05D003256 2.4e-09 67.0 42 71.4
Cpa.g.c26338 Carica papaya HOM05D002292 ORTHO05D003256 2.4e-09 67.0 71 52.1
CiPaw.04G128800 Carya illinoinensis HOM05D002292 ORTHO05D003256 2.4e-09 67.0 74 47.3
FvH4_6g26640 Fragaria vesca HOM05D002292 ORTHO05D003256 2.4e-09 67.0 73 47.9
FAN14G5439 Fragaria x ananassa HOM05D002292 ORTHO05D003256 2.4e-09 67.0 73 47.9
MD17G1234500 Malus domestica HOM05D002292 ORTHO05D003256 2.4e-09 67.0 53 60.4
Actinidia30456 Actinidia chinensis HOM05D002292 ORTHO05D003256 3.1e-09 66.6 38 78.9
MSTRG.15130 Avicennia marina HOM05D002292 ORTHO05D003256 3.1e-09 66.6 71 50.7
A07p00160 Brassica napus HOM05D002292 ORTHO05D003256 3.1e-09 66.6 53 58.5
FAN02G3233 Fragaria x ananassa HOM05D002292 ORTHO05D003256 3.1e-09 66.6 73 47.9
SGA_v2.0_scaffold34G13924 Striga asiatica HOM05D002292 ORTHO05D003256 3.1e-09 66.6 38 78.9
TAR369G0508 Trochodendron aralioides HOM05D002292 ORTHO05D003256 3.1e-09 66.6 81 45.7
TAR369G0796 Trochodendron aralioides HOM05D002292 ORTHO05D003256 3.1e-09 66.6 81 45.7
Manes.12G089500 Manihot esculenta HOM05D002292 ORTHO05D003256 4.1e-09 66.2 41 73.2
Os09g0326800 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 4.1e-09 66.2 72 48.6
Lsat_1_v5_gn_6_65161 Lactuca sativa HOM05D002292 ORTHO05D003256 5.3e-09 65.9 37 81.1
MD09G1242100 Malus domestica HOM05D002292 ORTHO05D003256 5.3e-09 65.9 71 49.3
Os02g0146700 Oryza sativa ssp. japonica HOM05D002292 ORTHO05D003256 5.3e-09 65.9 38 78.9
PSO210G2625 Papaver somniferum HOM05D002292 ORTHO05D003256 5.3e-09 65.9 48 64.6
PSO013G0195 Papaver somniferum HOM05D002292 ORTHO05D003256 6.9e-09 65.5 38 76.3
Solyc07g053650.4 Solanum lycopersicum HOM05D002292 ORTHO05D003256 6.9e-09 65.5 71 49.3
Sopen07g027620 Solanum pennellii HOM05D002292 ORTHO05D003256 6.9e-09 65.5 71 49.3
Aqoxy3G02563 Aquilegia oxysepala HOM05D002292 ORTHO05D003256 9.1e-09 65.1 41 70.7
FAN05G4358 Fragaria x ananassa HOM05D002292 ORTHO05D003256 9.1e-09 65.1 73 46.6
FAN09G0797 Fragaria x ananassa HOM05D002292 ORTHO05D003256 9.1e-09 65.1 73 46.6
HanXRQChr11g0326301 Helianthus annuus HOM05D002292 ORTHO05D003256 9.1e-09 65.1 37 78.4
Lalb_Chr01g0005091 Lupinus albus HOM05D002292 ORTHO05D003256 9.1e-09 65.1 71 49.3
RcHm_v2.0_Chr2g0127201 Rosa chinensis HOM05D002292 ORTHO05D003256 9.1e-09 65.1 38 76.3
CAN.G209.5 Capsicum annuum HOM05D002292 ORTHO05D003256 1.2e-08 64.7 38 76.3
TWI23G0418 Tripterygium wilfordii HOM05D002292 ORTHO05D003256 1.2e-08 64.7 34 85.3
Actinidia39328 Actinidia chinensis HOM05D002292 ORTHO05D003256 1.5e-08 64.3 50 62.0
CAN.G782.27 Capsicum annuum HOM05D002292 ORTHO05D003256 1.5e-08 64.3 70 50.0
Mapoly0136s0010 Marchantia polymorpha HOM05D002292 ORTHO05D003256 1.5e-08 64.3 48 64.6
Oeu016909.1 Olea europaea HOM05D002292 ORTHO05D003256 1.5e-08 64.3 76 46.1
PGSC0003DMG402009395 Solanum tuberosum HOM05D002292 ORTHO05D003256 1.5e-08 64.3 38 73.7
CSS0036482 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 2.0e-08 63.9 71 50.7
QL08p040049 Quercus lobata HOM05D002292 ORTHO05D003256 2.0e-08 63.9 38 76.3
Hund01060 Selenicereus undatus HOM05D002292 ORTHO05D003256 3.4e-08 63.2 38 76.3
QL08p040017 Quercus lobata HOM05D002292 ORTHO05D003256 4.5e-08 62.8 38 73.7
HPP92_006722 Vanilla planifolia HOM05D002292 ORTHO05D003256 5.9e-08 62.4 71 47.9
CSS0019547 Camellia sinensis var. sinensis HOM05D002292 ORTHO05D003256 7.7e-08 62.0 71 49.3
Pp3c19_20260 Physcomitrium patens HOM05D002292 ORTHO05D003256 7.7e-08 62.0 48 62.5
SMO147G0251 Selaginella moellendorffii HOM05D002292 ORTHO05D003256 7.7e-08 62.0 54 57.4
PSO349G0008 Papaver somniferum HOM05D002292 ORTHO05D003256 1.0e-07 61.6 57 50.9
TPR.G37007 Trifolium pratense HOM05D002292 ORTHO05D003256 1.0e-07 61.6 37 75.7
TPR.G37079 Trifolium pratense HOM05D002292 ORTHO05D003256 1.0e-07 61.6 37 75.7
AagrBONN_evm.TU.Sc2ySwM_228.5526 Anthoceros agrestis HOM05D002292 ORTHO05D003256 1.3e-07 61.2 44 63.6
PGSC0003DMG400021858 Solanum tuberosum HOM05D002292 ORTHO05D012147 1.3e-07 61.2 72 45.8
Gorai.004G198500 Gossypium raimondii HOM05D002292 ORTHO05D003256 2.2e-07 60.5 38 73.7
Pp3c18_12670 Physcomitrium patens HOM05D002292 ORTHO05D003256 2.2e-07 60.5 53 54.7
C07p55520 Brassica napus HOM05D002105 ORTHO05D001271 2.9e-07 60.1 115 42.6
BolC7t46031H Brassica oleracea HOM05D002105 ORTHO05D001271 2.9e-07 60.1 115 42.6
THA.LOC104824690 Tarenaya hassleriana HOM05D002292 ORTHO05D003256 2.9e-07 60.1 78 43.6
Gohir.D08G188500 Gossypium hirsutum HOM05D002292 ORTHO05D003256 3.8e-07 59.7 71 47.9
Sabra07G0110300 Salix brachista HOM05D002292 ORTHO05D003256 3.8e-07 59.7 49 63.3
Oeu036078.1 Olea europaea HOM05D002292 ORTHO05D003256 6.5e-07 58.9 76 47.4
QL10p029699 Quercus lobata HOM05D002292 ORTHO05D008330 6.5e-07 58.9 38 71.1
Sopen10g004040 Solanum pennellii HOM05D002292 ORTHO05D003256 8.5e-07 58.5 67 46.3
CBR_g30307 Chara braunii HOM05D002292 ORTHO05D003256 1.1e-06 58.2 43 65.1
RcHm_v2.0_Chr4g0418261 Rosa chinensis HOM05D002292 ORTHO05D003256 1.4e-06 57.8 44 65.9
Dinv06862 Davidia involucrata HOM05D002292 ORTHO05D003256 1.9e-06 57.4 73 47.9
SGA_v2.0_scaffold70G23495 Striga asiatica HOM05D002292 ORTHO05D003256 1.9e-06 57.4 48 60.4
CDE08G0095 Ceratophyllum demersum HOM05D002105 ORTHO05D001271 4.2e-06 56.2 143 44.8
FvH4_4g14560 Fragaria vesca HOM05D002292 ORTHO05D003256 5.5e-06 55.8 40 67.5


User provided reference genes

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