Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p28540 Brassica napus HOM05D001642 ORTHO05D016140 6.4e-23 109.8 51 100.0
BraA09t38416Z Brassica rapa HOM05D001642 ORTHO05D002129 8.3e-23 109.4 50 100.0
BcaC04g21061 Brassica carinata HOM05D001642 ORTHO05D002129 1.4e-22 108.6 50 98.0
C09p36110 Brassica napus HOM05D001642 ORTHO05D002129 1.4e-22 108.6 50 98.0
BolC9t56451H Brassica oleracea HOM05D001642 ORTHO05D002129 1.4e-22 108.6 50 98.0
BcaB01g01504 Brassica carinata HOM05D001642 ORTHO05D002129 8.9e-17 89.4 56 76.8
Sp6g06780 Schrenkiella parvula HOM05D001642 ORTHO05D002129 1.1e-14 82.4 50 74.0
BcaB05g23889 Brassica carinata HOM05D001642 ORTHO05D002129 9.2e-14 79.3 47 76.6
BcaC01g04665 Brassica carinata HOM05D001642 ORTHO05D002129 2.1e-13 78.2 50 72.0
A03p29090 Brassica napus HOM05D001642 ORTHO05D002129 2.1e-13 78.2 50 72.0
BolC3t15827H Brassica oleracea HOM05D001642 ORTHO05D002129 2.1e-13 78.2 50 72.0
BraA03t12104Z Brassica rapa HOM05D001642 ORTHO05D002129 2.1e-13 78.2 50 72.0
C03p35150 Brassica napus HOM05D001642 ORTHO05D002129 4.6e-13 77.0 50 70.0
Thhalv10028377m.g Eutrema salsugineum HOM05D001642 ORTHO05D002129 4.6e-13 77.0 47 72.3
BcaB05g22668 Brassica carinata HOM05D001642 ORTHO05D002129 7.8e-13 76.3 59 64.4
Aa31LG4G17930 Aethionema arabicum HOM05D001642 ORTHO05D002129 5.1e-12 73.6 63 58.7
AL6G44760 Arabidopsis lyrata HOM05D001642 ORTHO05D002129 5.1e-12 73.6 45 71.1
AT4G10710 Arabidopsis thaliana HOM05D001642 ORTHO05D002129 5.1e-12 73.6 45 71.1
CARHR255890 Cardamine hirsuta HOM05D001642 ORTHO05D002129 5.1e-12 73.6 47 66.0
Carub.0006s2948 Capsella rubella HOM05D001642 ORTHO05D002129 3.3e-11 70.9 45 66.7
Aa31LG6G7390 Aethionema arabicum HOM05D001642 ORTHO05D002129 2.1e-10 68.2 64 53.1
THA.LOC104815267 Tarenaya hassleriana HOM05D001642 ORTHO05D002129 2.8e-10 67.8 50 60.0
Prupe.6G306600 Prunus persica HOM05D001642 ORTHO05D002129 1.4e-09 65.5 44 61.4
CANSAT54G2357 Cannabis sativa HOM05D001642 ORTHO05D002129 2.4e-09 64.7 60 48.3
Hma1.2p1_0716F.1_g208070 Hydrangea macrophylla HOM05D001642 ORTHO05D016140 6.9e-09 63.2 44 56.8
Hma1.2p1_1170F.1_g263480 Hydrangea macrophylla HOM05D001642 ORTHO05D016140 6.9e-09 63.2 44 56.8
RcHm_v2.0_Chr2g0111311 Rosa chinensis HOM05D001642 ORTHO05D002129 1.5e-08 62.0 46 54.3
Sabra13G0003700 Salix brachista HOM05D001642 ORTHO05D002129 1.5e-08 62.0 56 53.6
TAR365G0980 Trochodendron aralioides HOM05D001642 ORTHO05D002129 1.5e-08 62.0 57 49.1
ClCG01G025060 Citrullus lanatus HOM05D001642 ORTHO05D002129 2.0e-08 61.6 47 51.1
Dinv24499 Davidia involucrata HOM05D001642 ORTHO05D002129 2.0e-08 61.6 44 59.1
Potri.013G004500 Populus trichocarpa HOM05D001642 ORTHO05D002129 2.0e-08 61.6 56 51.8
CANSAT54G2192 Cannabis sativa HOM05D001642 ORTHO05D002129 2.6e-08 61.2 60 46.7
Ciclev10010953m.g Citrus clementina HOM05D001642 ORTHO05D002129 3.4e-08 60.8 60 46.7
GSVIVG01031308001 Vitis vinifera HOM05D001642 ORTHO05D002129 4.4e-08 60.5 44 54.5
Potri.005G005000 Populus trichocarpa HOM05D001642 ORTHO05D002129 5.8e-08 60.1 56 50.0
TWI32G0544 Tripterygium wilfordii HOM05D001642 ORTHO05D002129 5.8e-08 60.1 42 59.5
Oeu060659.1 Olea europaea HOM05D001642 ORTHO05D002129 7.6e-08 59.7 45 55.6
TWI34G1342 Tripterygium wilfordii HOM05D001642 ORTHO05D002129 7.6e-08 59.7 42 59.5
arahy.Tifrunner.gnm1.ann1.CVX4HS Arachis hypogaea HOM05D001642 ORTHO05D002129 9.9e-08 59.3 45 53.3
arahy.Tifrunner.gnm1.ann1.LDJL5U Arachis hypogaea HOM05D001642 ORTHO05D002129 9.9e-08 59.3 45 53.3
Haze_04012 Corylus avellana HOM05D001642 ORTHO05D002129 9.9e-08 59.3 45 53.3
Manes.04G151900 Manihot esculenta HOM05D001642 ORTHO05D002129 9.9e-08 59.3 54 51.9
Nitab4.5_0005558g0040 Nicotiana tabacum HOM05D001642 ORTHO05D002129 9.9e-08 59.3 42 57.1
Sed0012617 Sechium edule HOM05D001642 ORTHO05D002129 9.9e-08 59.3 44 50.0
TAR365G0482 Trochodendron aralioides HOM05D001642 ORTHO05D002129 9.9e-08 59.3 62 45.2
TAR365G0965 Trochodendron aralioides HOM05D001642 ORTHO05D002129 9.9e-08 59.3 62 45.2
CAN.G1110.39 Capsicum annuum HOM05D001642 ORTHO05D002129 1.3e-07 58.9 42 57.1
MELO3C007085.2 Cucumis melo HOM05D001642 ORTHO05D002129 1.3e-07 58.9 47 46.8
Prupe.6G306700 Prunus persica HOM05D001642 ORTHO05D002129 1.3e-07 58.9 45 51.1
Sabra13G0003800 Salix brachista HOM05D001642 ORTHO05D002129 1.3e-07 58.9 43 55.8
GSVIVG01031306001 Vitis vinifera HOM05D001642 ORTHO05D002129 1.3e-07 58.9 42 54.8
Lj1g0018863 Lotus japonicus HOM05D001642 ORTHO05D002129 1.7e-07 58.5 45 55.6
Sed0013603 Sechium edule HOM05D001642 ORTHO05D002129 1.7e-07 58.5 62 41.9
Actinidia35499 Actinidia chinensis HOM05D001642 ORTHO05D002129 2.2e-07 58.2 44 54.5
Nn3g18368 Nelumbo nucifera HOM05D001642 ORTHO05D002129 2.2e-07 58.2 62 41.9
Cfa006744 Carpinus fangiana HOM05D001642 ORTHO05D002129 2.9e-07 57.8 45 51.1
CsaV3_6G052250 Cucumis sativus L. HOM05D001642 ORTHO05D002129 2.9e-07 57.8 44 47.7
Gohir.A13G177400 Gossypium hirsutum HOM05D001642 ORTHO05D002129 2.9e-07 57.8 43 55.8
Gohir.D13G184000 Gossypium hirsutum HOM05D001642 ORTHO05D002129 2.9e-07 57.8 43 55.8
Gorai.013G209300 Gossypium raimondii HOM05D001642 ORTHO05D002129 2.9e-07 57.8 43 55.8
Solyc10g006770.4 Solanum lycopersicum HOM05D001642 ORTHO05D002129 2.9e-07 57.8 46 50.0
Sopen10g002690 Solanum pennellii HOM05D001642 ORTHO05D002129 2.9e-07 57.8 46 50.0
PGSC0003DMG400025001 Solanum tuberosum HOM05D001642 ORTHO05D002129 2.9e-07 57.8 46 50.0
Aqoxy5G01998 Aquilegia oxysepala HOM05D001642 ORTHO05D002129 3.8e-07 57.4 56 46.4
MD12G1201500 Malus domestica HOM05D001642 ORTHO05D002129 3.8e-07 57.4 44 52.3
Manes.04G151800 Manihot esculenta HOM05D001642 ORTHO05D002129 3.8e-07 57.4 54 50.0
Potri.013G004600 Populus trichocarpa HOM05D001642 ORTHO05D002129 3.8e-07 57.4 41 56.1
MSTRG.27916 Avicennia marina HOM05D001642 ORTHO05D002129 4.9e-07 57.0 42 57.1
Dinv30931 Davidia involucrata HOM05D001642 ORTHO05D002129 4.9e-07 57.0 42 54.8
Oeu061926.1 Olea europaea HOM05D001642 ORTHO05D002129 4.9e-07 57.0 46 50.0
Rhsim11G0099900 Rhododendron simsii HOM05D001642 ORTHO05D002129 4.9e-07 57.0 44 52.3
CiPaw.07G034700 Carya illinoinensis HOM05D001642 ORTHO05D002129 6.4e-07 56.6 41 53.7
CDE01G0203 Ceratophyllum demersum HOM05D001642 ORTHO05D002129 6.4e-07 56.6 48 45.8
FvH4_1g19730 Fragaria vesca HOM05D001642 ORTHO05D002129 6.4e-07 56.6 46 47.8
Gohir.A11G275000 Gossypium hirsutum HOM05D001642 ORTHO05D002129 6.4e-07 56.6 44 52.3
Gorai.007G308600 Gossypium raimondii HOM05D001642 ORTHO05D002129 6.4e-07 56.6 44 52.3
Phvul.006G086400 Phaseolus vulgaris HOM05D001642 ORTHO05D002129 6.4e-07 56.6 60 45.0
Phvul.006G086500 Phaseolus vulgaris HOM05D001642 ORTHO05D002129 6.4e-07 56.6 60 45.0
QL03p009293 Quercus lobata HOM05D001642 ORTHO05D002129 6.4e-07 56.6 63 39.7
Sabra05G0015800 Salix brachista HOM05D001642 ORTHO05D002129 6.4e-07 56.6 56 48.2
Sc16g0009300 Simmondsia chinensis HOM05D001642 ORTHO05D002129 6.4e-07 56.6 39 59.0
Cpa.g.sc48.210 Carica papaya HOM05D001642 ORTHO05D002129 8.4e-07 56.2 44 50.0
CiPaw.07G034600 Carya illinoinensis HOM05D001642 ORTHO05D002129 8.4e-07 56.2 41 53.7
Duzib128G0933 Durio zibethinus HOM05D001642 ORTHO05D002129 8.4e-07 56.2 43 53.5
Glyma.18G044600 Glycine max HOM05D001642 ORTHO05D002129 8.4e-07 56.2 45 51.1
Lj5C321T11 Lonicera japonica HOM05D001642 ORTHO05D002129 8.4e-07 56.2 60 43.3
Sabra05G0001800 Salix brachista HOM05D001642 ORTHO05D002129 8.4e-07 56.2 55 47.3
Sabra05G0015900 Salix brachista HOM05D001642 ORTHO05D002129 8.4e-07 56.2 55 47.3
VMungo0540G0662 Vigna mungo HOM05D001642 ORTHO05D002129 8.4e-07 56.2 60 45.0
ECA236G2649 Erigeron canadensis HOM05D001642 ORTHO05D002129 1.1e-06 55.8 45 51.1
FAN19G3179 Fragaria x ananassa HOM05D001642 ORTHO05D002129 1.1e-06 55.8 42 52.4
Thecc.05G327700 Theobroma cacao HOM05D001642 ORTHO05D002129 1.1e-06 55.8 42 54.8
vmacro23464 Vaccinium macrocarpon HOM05D001642 ORTHO05D002129 1.1e-06 55.8 45 48.9
CSS0002222 Camellia sinensis var. sinensis HOM05D001642 ORTHO05D002129 1.4e-06 55.5 42 54.8
CSS0026403 Camellia sinensis var. sinensis HOM05D001642 ORTHO05D002129 1.4e-06 55.5 42 54.8
FAN26G2915 Fragaria x ananassa HOM05D001642 ORTHO05D002129 1.4e-06 55.5 46 45.7
Gohir.D11G285400 Gossypium hirsutum HOM05D001642 ORTHO05D002129 1.4e-06 55.5 44 52.3
MD04G1188700 Malus domestica HOM05D001642 ORTHO05D002129 1.4e-06 55.5 44 50.0
MD04G1188800 Malus domestica HOM05D001642 ORTHO05D002129 1.4e-06 55.5 41 53.7
Peaxi162Scf00020g00229 Petunia axillaris HOM05D001642 ORTHO05D002129 1.4e-06 55.5 47 44.7
QL11p000167 Quercus lobata HOM05D001642 ORTHO05D002129 1.4e-06 55.5 43 48.8
unitig_62.g23641 Utricularia gibba HOM05D001642 ORTHO05D002129 1.4e-06 55.5 40 55.0
Zm00001eb229990 Zea mays HOM05D001642 ORTHO05D002129 1.4e-06 55.5 50 44.0
Ciclev10010951m.g Citrus clementina HOM05D001642 ORTHO05D002129 1.9e-06 55.1 43 51.2
Lj6g0001510 Lotus japonicus HOM05D001642 ORTHO05D002129 1.9e-06 55.1 45 51.1
Lalb_Chr18g0053751 Lupinus albus HOM05D001642 ORTHO05D002129 1.9e-06 55.1 42 50.0
Manes.08G108300 Manihot esculenta HOM05D001642 ORTHO05D002129 1.9e-06 55.1 41 53.7
Rhsim02G0168200 Rhododendron simsii HOM05D001642 ORTHO05D002129 1.9e-06 55.1 42 52.4
Thecc.05G327600 Theobroma cacao HOM05D001642 ORTHO05D002129 1.9e-06 55.1 43 48.8
Atru.chr12.1599 Acer truncatum HOM05D001642 ORTHO05D002129 2.4e-06 54.7 45 48.9
Atru.chr12.1600 Acer truncatum HOM05D001642 ORTHO05D002129 2.4e-06 54.7 45 48.9
Cfa006743 Carpinus fangiana HOM05D001642 ORTHO05D002129 2.4e-06 54.7 41 51.2
Haze_04013 Corylus avellana HOM05D001642 ORTHO05D002129 2.4e-06 54.7 41 51.2
Medtr6g009500 Medicago truncatula HOM05D001642 ORTHO05D002129 2.4e-06 54.7 53 49.1
Potri.005G005300 Populus trichocarpa HOM05D001642 ORTHO05D002129 2.4e-06 54.7 41 53.7
Sopen01g044490 Solanum pennellii HOM05D001642 ORTHO05D002129 2.4e-06 54.7 46 45.7
Atru.chr2.1956 Acer truncatum HOM05D001642 ORTHO05D002129 3.2e-06 54.3 48 41.7
CAN.G1374.12 Capsicum annuum HOM05D001642 ORTHO05D002129 3.2e-06 54.3 46 45.7
Duzib106G1569 Durio zibethinus HOM05D001642 ORTHO05D002129 3.2e-06 54.3 46 50.0
Lalb_Chr15g0085261 Lupinus albus HOM05D001642 ORTHO05D016140 3.2e-06 54.3 45 48.9
Psat5g142680 Pisum sativum HOM05D001642 ORTHO05D002129 3.2e-06 54.3 42 50.0
FAN28G0446 Fragaria x ananassa HOM05D001642 ORTHO05D002129 4.2e-06 53.9 46 45.7
Glyma.11G210335 Glycine max HOM05D001642 ORTHO05D002129 4.2e-06 53.9 45 48.9
Glyma.18G044500 Glycine max HOM05D001642 ORTHO05D002129 4.2e-06 53.9 45 51.1
Medtr3g064470 Medicago truncatula HOM05D001642 ORTHO05D002129 4.2e-06 53.9 45 51.1
Nitab4.5_0002783g0010 Nicotiana tabacum HOM05D001642 ORTHO05D002129 4.2e-06 53.9 46 45.7
Nitab4.5_0009690g0010 Nicotiana tabacum HOM05D001642 ORTHO05D002129 4.2e-06 53.9 46 45.7
PSO170G0832 Papaver somniferum HOM05D001642 ORTHO05D002129 4.2e-06 53.9 47 44.7
Eucgr.J01613 Eucalyptus grandis HOM05D001642 ORTHO05D002129 5.4e-06 53.5 42 50.0
Gohir.A13G177300 Gossypium hirsutum HOM05D001642 ORTHO05D002129 5.4e-06 53.5 41 51.2
Gorai.013G209200 Gossypium raimondii HOM05D001642 ORTHO05D002129 5.4e-06 53.5 41 51.2
Lalb_Chr20g0117101 Lupinus albus HOM05D001642 ORTHO05D002129 5.4e-06 53.5 45 46.7
MD12G1201600 Malus domestica HOM05D001642 ORTHO05D002129 5.4e-06 53.5 39 51.3
CDE12G0244 Ceratophyllum demersum HOM05D001642 ORTHO05D002129 7.1e-06 53.1 48 43.8
Ca_17066_v3 Cicer arietinum L. HOM05D001642 ORTHO05D002129 7.1e-06 53.1 45 48.9
Duzib177G0327 Durio zibethinus HOM05D001642 ORTHO05D002129 7.1e-06 53.1 41 48.8
Glyma.11G210662 Glycine max HOM05D001642 ORTHO05D002129 7.1e-06 53.1 42 52.4
SGA_v2.0_scaffold104G30153 Striga asiatica HOM05D001642 ORTHO05D002129 7.1e-06 53.1 45 48.9
FAN03G3220 Fragaria x ananassa HOM05D001642 ORTHO05D002129 9.3e-06 52.8 62 40.3
PSO017G1336 Papaver somniferum HOM05D001642 ORTHO05D002129 9.3e-06 52.8 47 42.6
PGR042G3655 Punica granatum HOM05D001642 ORTHO05D002129 9.3e-06 52.8 47 46.8
SGA_v2.0_scaffold45G17012 Striga asiatica HOM05D001642 ORTHO05D002129 9.3e-06 52.8 43 51.2
TPR.G26670 Trifolium pratense HOM05D001642 ORTHO05D002129 9.3e-06 52.8 48 45.8


User provided reference genes

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