Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p07230 Brassica napus HOM05D004839 ORTHO05D006012 4.3e-270 934.5 623 100.0
C09p08080 Brassica napus HOM05D004839 ORTHO05D006012 1.7e-250 869.4 629 95.2
BolC9t53722H Brassica oleracea HOM05D004839 ORTHO05D006012 1.1e-249 866.7 636 93.7
BcaC04g23462 Brassica carinata HOM05D004839 ORTHO05D006012 7.1e-249 864.0 629 94.6
BraA09t36373Z Brassica rapa HOM05D004839 ORTHO05D006012 1.1e-217 760.4 515 89.3
C02p61390 Brassica napus HOM05D004839 ORTHO05D006012 8.2e-213 744.2 633 82.8
Sp2g24400 Schrenkiella parvula HOM05D004839 ORTHO05D006012 1.4e-212 743.4 639 81.1
BolC2t12188H Brassica oleracea HOM05D004839 ORTHO05D006012 2.5e-209 732.6 632 82.3
A02p41460 Brassica napus HOM05D004839 ORTHO05D006012 7.9e-200 701.0 634 79.3
Thhalv10003808m.g Eutrema salsugineum HOM05D004839 ORTHO05D006012 2.0e-198 696.4 652 77.6
Carub.0008s2182 Capsella rubella HOM05D004839 ORTHO05D006012 2.4e-196 689.5 515 82.5
AT5G61150 Arabidopsis thaliana HOM05D004839 ORTHO05D006012 1.3e-194 683.7 635 77.6
CARHR274840 Cardamine hirsuta HOM05D004839 ORTHO05D006012 1.3e-189 667.2 633 77.3
THA.LOC104818342 Tarenaya hassleriana HOM05D004839 ORTHO05D006012 1.4e-188 663.7 636 73.4
Aa31LG11G2200 Aethionema arabicum HOM05D004839 ORTHO05D006012 8.5e-186 654.4 657 75.3
AL8G37800 Arabidopsis lyrata HOM05D004839 ORTHO05D006012 5.7e-174 615.1 647 72.3
Ciclev10019267m.g Citrus clementina HOM05D004839 ORTHO05D006012 5.4e-148 528.9 647 60.4
Gorai.008G198100 Gossypium raimondii HOM05D004839 ORTHO05D006012 7.8e-147 525.0 643 63.9
Gohir.D12G184700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.0e-146 523.1 643 63.8
Gohir.A12G181900 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.3e-145 519.6 643 63.8
PGR044G2204 Punica granatum HOM05D004839 ORTHO05D006012 1.2e-144 517.7 649 58.2
Duzib205G0813 Durio zibethinus HOM05D004839 ORTHO05D006012 1.4e-143 514.2 640 62.2
Haze_07703 Corylus avellana HOM05D004839 ORTHO05D006012 1.2e-142 511.1 637 62.6
Manes.14G084900 Manihot esculenta HOM05D004839 ORTHO05D006012 4.4e-142 509.2 635 59.2
Atru.chr9.403 Acer truncatum HOM05D004839 ORTHO05D006012 5.4e-140 502.3 640 58.8
Dinv17400 Davidia involucrata HOM05D004839 ORTHO05D006012 3.5e-139 499.6 640 59.4
Dinv10521 Davidia involucrata HOM05D004839 ORTHO05D006012 4.3e-137 492.7 539 61.0
QL10p019188 Quercus lobata HOM05D004839 ORTHO05D006012 9.5e-137 491.5 640 59.5
Eucgr.K02520 Eucalyptus grandis HOM05D004839 ORTHO05D006012 1.8e-135 487.3 642 57.5
Sabra12G0046900 Salix brachista HOM05D004839 ORTHO05D006012 6.4e-133 478.8 633 56.6
Cc04_g13220 Coffea canephora HOM05D004839 ORTHO05D006012 1.4e-132 477.6 644 58.7
TWI81G0494 Tripterygium wilfordii HOM05D004839 ORTHO05D006012 3.2e-132 476.5 652 55.1
Manes.06G085750 Manihot esculenta HOM05D004839 ORTHO05D006012 2.7e-131 473.4 692 52.7
Actinidia25779 Actinidia chinensis HOM05D004839 ORTHO05D006012 6.6e-130 468.8 641 60.7
CiPaw.11G051800 Carya illinoinensis HOM05D004839 ORTHO05D006012 1.5e-129 467.6 640 59.2
Prupe.5G203800 Prunus persica HOM05D004839 ORTHO05D006012 4.0e-127 459.5 544 60.1
TAR374G0643 Trochodendron aralioides HOM05D004839 ORTHO05D006012 3.4e-126 456.4 639 54.0
Sc04g0004870 Simmondsia chinensis HOM05D004839 ORTHO05D006012 2.2e-125 453.8 638 51.3
TAR622G0763 Trochodendron aralioides HOM05D004839 ORTHO05D006012 1.1e-124 451.4 639 55.6
CSS0002450 Camellia sinensis var. sinensis HOM05D004839 ORTHO05D006012 2.4e-124 450.3 641 58.5
ECA246G0121 Erigeron canadensis HOM05D004839 ORTHO05D006012 3.2e-124 449.9 531 54.2
Lsat_1_v5_gn_5_23161 Lactuca sativa HOM05D004839 ORTHO05D006012 1.0e-122 444.9 650 51.4
Nn4g23407 Nelumbo nucifera HOM05D004839 ORTHO05D006012 1.7e-122 444.1 638 56.6
Potri.012G065600 Populus trichocarpa HOM05D004839 ORTHO05D006012 2.3e-122 443.7 634 56.8
Thecc.03G099900 Theobroma cacao HOM05D004839 ORTHO05D006012 2.3e-122 443.7 500 59.2
MBI16_g41829_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 8.7e-122 441.8 652 55.1
Migut.D01694 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.1e-121 441.4 643 54.4
Lsat_1_v5_gn_1_13541 Lactuca sativa HOM05D004839 ORTHO05D006012 1.1e-121 441.4 537 53.8
MD14G1210500 Malus domestica HOM05D004839 ORTHO05D006012 1.5e-121 441.0 541 55.5
SalBow5G5272 Salvia bowleyana HOM05D004839 ORTHO05D006012 2.5e-121 440.3 647 54.1
Lj5A104T41 Lonicera japonica HOM05D004839 ORTHO05D006012 2.1e-120 437.2 637 51.8
MD06G1201400 Malus domestica HOM05D004839 ORTHO05D006012 2.1e-120 437.2 444 59.5
Aqoxy3G03618 Aquilegia oxysepala HOM05D004839 ORTHO05D006012 3.6e-120 436.4 536 58.2
EL10Ac5g11115 Beta vulgaris HOM05D004839 ORTHO05D006012 4.0e-119 433.0 638 51.6
Glyma.04G163400 Glycine max HOM05D004839 ORTHO05D006012 6.9e-119 432.2 525 59.6
FvH4_5g14030 Fragaria vesca HOM05D004839 ORTHO05D006012 2.0e-118 430.6 633 52.3
AUR62008513 Chenopodium quinoa HOM05D004839 ORTHO05D006012 2.6e-118 430.3 561 50.4
FAN08G2012 Fragaria x ananassa HOM05D004839 ORTHO05D006012 2.2e-117 427.2 634 52.2
GSVIVG01007883001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.9e-116 424.1 549 59.4
Nitab4.5_0001410g0060 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.1e-115 420.6 662 54.2
Glyma.06G202100 Glycine max HOM05D004839 ORTHO05D006012 1.0e-114 418.3 420 58.1
HanXRQChr05g0157271 Helianthus annuus HOM05D004839 ORTHO05D006012 1.0e-114 418.3 540 54.3
Lj1g0002650 Lotus japonicus HOM05D004839 ORTHO05D006012 1.0e-114 418.3 522 54.8
Oeu001010.1 Olea europaea HOM05D004839 ORTHO05D006012 1.0e-114 418.3 425 59.1
MSTRG.11357 Avicennia marina HOM05D004839 ORTHO05D006012 2.3e-114 417.2 638 51.1
RcHm_v2.0_Chr7g0182791 Rosa chinensis HOM05D004839 ORTHO05D006012 3.0e-114 416.8 633 58.6
AUR62021577 Chenopodium quinoa HOM05D004839 ORTHO05D006012 6.7e-114 415.6 524 52.1
arahy.Tifrunner.gnm1.ann1.PN7U9Z Arachis hypogaea HOM05D004839 ORTHO05D006012 3.3e-113 413.3 664 55.0
DCAR_023142 Daucus carota HOM05D004839 ORTHO05D006012 5.6e-113 412.5 558 52.3
Sopen03g034280 Solanum pennellii HOM05D004839 ORTHO05D006012 9.6e-113 411.8 522 58.4
Sed0026784 Sechium edule HOM05D004839 ORTHO05D006012 2.1e-112 410.6 508 54.9
Solyc03g115240.4 Solanum lycopersicum HOM05D004839 ORTHO05D006012 3.6e-112 409.8 641 56.3
arahy.Tifrunner.gnm1.ann1.8FG0EB Arachis hypogaea HOM05D004839 ORTHO05D006012 4.8e-112 409.5 532 57.3
ClCG04G011890 Citrullus lanatus HOM05D004839 ORTHO05D006012 2.4e-111 407.1 639 52.7
Ah.11g047930 Amaranthus hybridus HOM05D004839 ORTHO05D006012 5.3e-111 406.0 642 48.4
Lalb_Chr13g0296121 Lupinus albus HOM05D004839 ORTHO05D006012 1.5e-110 404.4 451 55.0
CAN.G479.17 Capsicum annuum HOM05D004839 ORTHO05D006012 2.0e-110 404.1 671 54.7
Hund02595 Selenicereus undatus HOM05D004839 ORTHO05D006012 4.5e-110 402.9 692 50.6
Actinidia04835 Actinidia chinensis HOM05D004839 ORTHO05D006012 5.8e-110 402.5 436 57.6
MELO3C002019.2 Cucumis melo HOM05D004839 ORTHO05D006012 7.6e-110 402.1 554 53.6
TPR.G11937 Trifolium pratense HOM05D004839 ORTHO05D006012 7.6e-110 402.1 636 54.2
VMungo1309G1059 Vigna mungo HOM05D004839 ORTHO05D006012 7.6e-110 402.1 424 57.1
Nitab4.5_0001485g0220 Nicotiana tabacum HOM05D004839 ORTHO05D006012 2.2e-109 400.6 563 53.8
Phvul.009G192800 Phaseolus vulgaris HOM05D004839 ORTHO05D006012 2.9e-109 400.2 424 57.3
MSTRG.22981 Avicennia marina HOM05D004839 ORTHO05D006012 3.8e-109 399.8 634 53.2
Psat0s569g0080 Pisum sativum HOM05D004839 ORTHO05D006012 2.4e-108 397.1 528 54.2
Peaxi162Scf00201g10021 Petunia axillaris HOM05D004839 ORTHO05D006012 7.9e-107 392.1 412 58.5
CDE04G3432 Ceratophyllum demersum HOM05D004839 ORTHO05D006012 1.0e-106 391.7 664 46.7
Ca_02963_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 3.9e-106 389.8 483 60.2
unitig_749.g13436 Utricularia gibba HOM05D004839 ORTHO05D006012 3.3e-105 386.7 539 48.4
CsaV3_1G005900 Cucumis sativus L. HOM05D000422 ORTHO05D003570 4.3e-105 386.3 546 51.5
FAN13G1538 Fragaria x ananassa HOM05D004839 ORTHO05D006012 1.3e-104 384.8 631 45.2
HPP92_018601 Vanilla planifolia HOM05D004839 ORTHO05D006012 1.3e-104 384.8 560 48.4
Lalb_Chr07g0184911 Lupinus albus HOM05D004839 ORTHO05D006012 1.6e-104 384.4 651 50.5
Sed0023482 Sechium edule HOM05D004839 ORTHO05D006012 2.4e-103 380.6 543 51.2
SGA_v2.0_scaffold114G31924 Striga asiatica HOM05D004839 ORTHO05D006012 1.2e-102 378.3 677 44.6
Medtr3g024380 Medicago truncatula HOM05D004839 ORTHO05D006012 1.2e-99 368.2 630 52.9
Medtr3g024360 Medicago truncatula HOM05D004839 ORTHO05D006012 1.0e-98 365.2 630 53.8
PSO017G5800 Papaver somniferum HOM05D004839 ORTHO05D006012 1.8e-98 364.4 556 49.3
PSO478G1197 Papaver somniferum HOM05D004839 ORTHO05D006012 1.8e-98 364.4 555 49.0
Zm00001eb298660 Zea mays HOM05D004839 ORTHO05D006012 3.3e-97 360.1 567 48.9
ATR0064G044 Amborella trichopoda HOM05D004839 ORTHO05D006012 1.1e-95 355.1 361 56.8
Os12g0579000 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.6e-91 341.3 465 49.7
SEGI_03099 Sequoiadendron giganteum HOM05D004839 ORTHO05D006012 3.9e-90 336.7 548 49.1
Zm00001eb118140 Zea mays HOM05D004839 ORTHO05D006012 5.7e-89 332.8 580 46.2
GSVIVG01007906001 Vitis vinifera HOM05D004839 ORTHO05D006012 1.1e-87 328.6 368 60.3
Gohir.D13G091100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 1.5e-86 324.7 376 62.0
COL.COLO4_37593 Corchorus olitorius HOM05D004839 ORTHO05D006012 2.6e-86 323.9 625 39.8
Gohir.D07G141700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.4e-86 323.6 376 61.4
Gohir.D12G082100 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.4e-86 323.6 376 61.7
Gohir.D12G082302 Gossypium hirsutum HOM05D004839 ORTHO05D006012 3.4e-86 323.6 376 61.4
Lalb_Chr07g0184901 Lupinus albus HOM05D004839 ORTHO05D006012 3.4e-86 323.6 452 47.8
vmacro16504 Vaccinium macrocarpon HOM05D004839 ORTHO05D006012 2.5e-84 317.4 697 42.8
Pp3c14_2440 Physcomitrium patens HOM05D004839 ORTHO05D006012 3.2e-76 290.4 358 50.6
Mapoly0001s0516 Marchantia polymorpha HOM05D004839 ORTHO05D006012 4.4e-73 280.0 342 48.8
AagrBONN_evm.TU.Sc2ySwM_228.780 Anthoceros agrestis HOM05D004839 ORTHO05D006012 2.0e-70 271.2 320 50.6
Os07g0109600 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 5.0e-69 266.5 478 45.6
Os03g0756500 Oryza sativa ssp. japonica HOM05D004839 ORTHO05D006012 1.1e-68 265.4 342 45.9
Nn030s41597 Nelumbo nucifera HOM05D004839 ORTHO05D006012 3.3e-65 253.8 311 60.5
SMO301G0010 Selaginella moellendorffii HOM05D004839 ORTHO05D006012 1.1e-60 238.8 384 42.4
MBI05_g39010_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 1.5e-57 228.4 454 40.7
SGA_v2.0_scaffold313G48307 Striga asiatica HOM05D004839 ORTHO05D006012 8.6e-53 212.6 314 44.3
MSTRG.22984 Avicennia marina HOM05D004839 ORTHO05D006012 1.2e-51 208.8 276 46.0
Migut.I00327 Erythranthe guttata HOM05D004839 ORTHO05D006012 1.1e-47 195.7 407 37.6
CBR_g54910 Chara braunii HOM05D004839 ORTHO05D000002 2.0e-46 191.4 276 45.7
Oeu001821.1 Olea europaea HOM05D004839 ORTHO05D006012 5.7e-41 173.3 246 45.1
MD06G1201100 Malus domestica HOM05D004839 ORTHO05D006012 1.7e-32 145.2 134 62.7
Oeu008253.1 Olea europaea HOM05D004839 ORTHO05D006012 3.2e-31 141.0 189 51.9
Gohir.D01G045700 Gossypium hirsutum HOM05D004839 ORTHO05D006012 4.1e-31 140.6 338 44.1
arahy.Tifrunner.gnm1.ann1.YGY8HB Arachis hypogaea HOM05D010000 ORTHO05D006012 2.3e-29 134.8 177 49.2
MBI05_g05675_MAGBIO Magnolia biondii HOM05D004839 ORTHO05D006012 6.6e-29 133.3 454 31.1
Lsat_1_v5_gn_3_57821 Lactuca sativa HOM05D004839 ORTHO05D006012 1.5e-28 132.1 103 67.0
RhsimUnG0229200 Rhododendron simsii HOM05D004839 ORTHO05D006012 3.3e-28 131.0 274 47.8
MCO04G392 Micromonas commoda HOM05D004839 ORTHO05D006012 5.6e-20 103.6 376 29.8
SalBow5G1942 Salvia bowleyana HOM05D004839 ORTHO05D006012 1.1e-18 99.4 255 36.1
Oeu022173.1 Olea europaea HOM05D004839 ORTHO05D006012 1.5e-17 95.5 288 31.6
Cpa.g.c41089 Carica papaya HOM05D004839 ORTHO05D006012 4.9e-16 90.5 97 51.5
Cre16.g694204 Chlamydomonas reinhardtii HOM05D004839 ORTHO05D006012 1.4e-15 89.0 333 28.5
Cpa.g.c34487 Carica papaya HOM05D004839 ORTHO05D006012 7.8e-14 83.2 148 62.8
arahy.Tifrunner.gnm1.ann1.WE96GU Arachis hypogaea HOM05D004839 ORTHO05D006012 1.9e-12 78.6 184 40.8
MD06G1201000 Malus domestica HOM05D004839 ORTHO05D006012 7.3e-12 76.6 60 71.7
MD06G1200900 Malus domestica HOM05D004839 ORTHO05D006012 2.4e-10 71.6 130 46.2
Peaxi162Scf00201g00231 Petunia axillaris HOM05D004839 ORTHO05D006012 2.4e-10 71.6 53 64.2
Ca_02964_v3 Cicer arietinum L. HOM05D004839 ORTHO05D006012 2.4e-07 61.6 146 39.0


User provided reference genes

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