Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A09p06460 Brassica napus HOM05D005740 ORTHO05D007085 2.1e-169 599.0 305 100.0
C09p07180 Brassica napus HOM05D005740 ORTHO05D007085 3.8e-163 578.2 306 96.4
BcaC04g23547 Brassica carinata HOM05D005740 ORTHO05D007085 8.4e-163 577.0 306 96.1
BraA09t36289Z Brassica rapa HOM05D005740 ORTHO05D007085 5.1e-160 567.8 305 95.7
Sp2g22850 Schrenkiella parvula HOM05D005740 ORTHO05D007085 5.5e-146 521.2 315 86.3
Thhalv10004495m.g Eutrema salsugineum HOM05D005740 ORTHO05D007085 7.9e-145 517.3 313 86.3
BcaNung01238 Brassica carinata HOM05D005740 ORTHO05D007085 4.1e-141 505.0 314 84.7
BcaB04g19814 Brassica carinata HOM05D005740 ORTHO05D007085 1.7e-139 499.6 305 86.2
Carub.0006s2231 Capsella rubella HOM05D005740 ORTHO05D007085 4.2e-138 495.0 308 84.4
AL6G36080 Arabidopsis lyrata HOM05D005740 ORTHO05D007085 8.0e-137 490.7 309 83.8
CARHR188930 Cardamine hirsuta HOM05D005740 ORTHO05D007085 8.8e-136 487.3 308 82.8
AT5G24490 Arabidopsis thaliana HOM05D005740 ORTHO05D007085 7.5e-135 484.2 309 82.8
Aa31LG11G3730 Aethionema arabicum HOM05D005740 ORTHO05D007085 4.4e-127 458.4 313 78.6
THA.LOC104798985 Tarenaya hassleriana HOM05D005740 ORTHO05D007085 2.1e-121 439.5 315 74.0
Duzib205G0029 Durio zibethinus HOM05D005740 ORTHO05D007085 2.5e-106 389.4 313 67.4
COL.COLO4_14370 Corchorus olitorius HOM05D005740 ORTHO05D007085 2.3e-104 382.9 253 75.1
Thecc.03G208700 Theobroma cacao HOM05D005740 ORTHO05D007085 4.4e-103 378.6 321 65.7
Manes.05G197600 Manihot esculenta HOM05D005740 ORTHO05D007085 5.8e-103 378.3 310 64.5
Gohir.D08G116100 Gossypium hirsutum HOM05D005740 ORTHO05D007085 1.9e-101 373.2 323 65.3
BcaC09g52277 Brassica carinata HOM05D005740 ORTHO05D007085 2.4e-101 372.9 234 83.8
Potri.012G005800 Populus trichocarpa HOM05D005740 ORTHO05D007085 7.0e-101 371.3 312 64.1
BcaC09g49688 Brassica carinata HOM05D005740 ORTHO05D007085 2.0e-100 369.8 309 69.6
arahy.Tifrunner.gnm1.ann1.2GB72X Arachis hypogaea HOM05D005740 ORTHO05D007085 3.9e-99 365.5 290 66.2
MD07G1298900 Malus domestica HOM05D005740 ORTHO05D007085 3.9e-99 365.5 248 73.8
Sed0000166 Sechium edule HOM05D005740 ORTHO05D007085 3.9e-99 365.5 309 64.1
TWI23G0506 Tripterygium wilfordii HOM05D005740 ORTHO05D007085 5.0e-99 365.2 320 61.2
arahy.Tifrunner.gnm1.ann1.88XX4I Arachis hypogaea HOM05D005740 ORTHO05D007085 8.6e-99 364.4 290 65.9
Cfa016160 Carpinus fangiana HOM05D005740 ORTHO05D007085 1.9e-98 363.2 285 67.4
Gorai.004G125000 Gossypium raimondii HOM05D005740 ORTHO05D007085 1.9e-98 363.2 310 66.1
Potri.015G002200 Populus trichocarpa HOM05D005740 ORTHO05D007085 4.3e-98 362.1 314 62.7
ClCG02G000010 Citrullus lanatus HOM05D005740 ORTHO05D007085 9.5e-98 360.9 250 73.6
Haze_00297 Corylus avellana HOM05D005740 ORTHO05D007085 3.6e-97 359.0 284 65.1
QL09p007195 Quercus lobata HOM05D005740 ORTHO05D007085 3.6e-97 359.0 264 67.0
Ciclev10021260m.g Citrus clementina HOM05D005740 ORTHO05D007085 1.4e-96 357.1 244 73.4
Phvul.009G045100 Phaseolus vulgaris HOM05D005740 ORTHO05D007085 1.8e-96 356.7 270 68.5
Cpa.g.sc3.153 Carica papaya HOM05D005740 ORTHO05D007085 2.3e-96 356.3 317 60.9
CiPaw.05G205100 Carya illinoinensis HOM05D005740 ORTHO05D007085 2.3e-96 356.3 264 67.4
CsaV3_2G019690 Cucumis sativus L. HOM05D005740 ORTHO05D007085 4.0e-96 355.5 242 73.1
Glyma.04G228400 Glycine max HOM05D005740 ORTHO05D007085 6.8e-96 354.8 309 64.7
Glyma.06G136500 Glycine max HOM05D005740 ORTHO05D007085 1.2e-95 354.0 308 64.9
ECA232G2160 Erigeron canadensis HOM05D005740 ORTHO05D007085 4.4e-95 352.1 238 71.8
VMungo1309G0132 Vigna mungo HOM05D005740 ORTHO05D007085 5.8e-95 351.7 309 63.8
Nn3g18795 Nelumbo nucifera HOM05D005740 ORTHO05D007085 7.5e-95 351.3 336 59.8
Sabra15G0001400 Salix brachista HOM05D005740 ORTHO05D007085 7.5e-95 351.3 313 60.1
PGSC0003DMG400027021 Solanum tuberosum HOM05D005740 ORTHO05D007085 1.3e-94 350.5 305 61.6
Prupe.2G318800 Prunus persica HOM05D005740 ORTHO05D007085 1.7e-94 350.1 317 61.8
Eucgr.A01406 Eucalyptus grandis HOM05D005740 ORTHO05D007085 2.2e-94 349.7 292 63.4
Sopen06g029440 Solanum pennellii HOM05D005740 ORTHO05D007085 2.2e-94 349.7 305 61.6
DCAR_020372 Daucus carota HOM05D005740 ORTHO05D007085 6.4e-94 348.2 248 70.2
GSVIVG01038643001 Vitis vinifera HOM05D005740 ORTHO05D007085 6.4e-94 348.2 236 73.7
SalBow6G1442 Salvia bowleyana HOM05D005740 ORTHO05D007085 1.9e-93 346.7 315 61.0
Gohir.A08G104500 Gossypium hirsutum HOM05D005740 ORTHO05D007085 4.1e-93 345.5 322 61.8
MSTRG.26978 Avicennia marina HOM05D005740 ORTHO05D007085 7.1e-93 344.7 282 64.9
Solyc06g073090.3 Solanum lycopersicum HOM05D005740 ORTHO05D007085 7.1e-93 344.7 304 61.5
HanXRQChr04g0105951 Helianthus annuus HOM05D005740 ORTHO05D007085 1.2e-92 344.0 287 64.5
MBI12_g14495_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 2.1e-92 343.2 303 61.1
PGR042G0341 Punica granatum HOM05D005740 ORTHO05D007085 4.6e-92 342.0 310 59.0
C01p22900 Brassica napus HOM05D005740 ORTHO05D007085 1.0e-91 340.9 234 78.2
C01p22870 Brassica napus HOM05D005740 ORTHO05D007085 1.3e-91 340.5 234 78.6
Lalb_Chr08g0239611 Lupinus albus HOM05D005740 ORTHO05D007085 3.0e-91 339.3 278 65.5
AUR62035622 Chenopodium quinoa HOM05D005740 ORTHO05D007085 3.9e-91 339.0 241 70.1
Lsat_1_v5_gn_9_50040 Lactuca sativa HOM05D005740 ORTHO05D007085 6.6e-91 338.2 235 70.6
EL10Ac3g05180 Beta vulgaris HOM05D005740 ORTHO05D007085 8.6e-91 337.8 307 60.6
Ca_16779_v3 Cicer arietinum L. HOM05D005740 ORTHO05D007085 1.5e-90 337.0 249 66.7
Medtr3g092720 Medicago truncatula HOM05D005740 ORTHO05D007085 3.3e-90 335.9 293 60.1
Lj1g0025829 Lotus japonicus HOM05D005740 ORTHO05D007085 4.3e-90 335.5 291 62.2
SGA_v2.0_scaffold18G08464 Striga asiatica HOM05D005740 ORTHO05D007085 5.6e-90 335.1 290 61.7
CANSAT21G1962 Cannabis sativa HOM05D005740 ORTHO05D007085 7.3e-90 334.7 307 59.3
CDE05G3242 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 7.3e-90 334.7 317 55.8
TAR375G0796 Trochodendron aralioides HOM05D005740 ORTHO05D007085 1.2e-89 334.0 237 72.2
CSS0030523 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.1e-89 333.2 246 68.7
BcaC09g52279 Brassica carinata HOM05D005740 ORTHO05D007085 2.8e-89 332.8 208 82.7
CSS0042637 Camellia sinensis var. sinensis HOM05D005740 ORTHO05D007085 2.8e-89 332.8 246 68.7
Psat5g072000 Pisum sativum HOM05D005740 ORTHO05D007085 3.6e-89 332.4 295 60.7
Nitab4.5_0002895g0020 Nicotiana tabacum HOM05D005740 ORTHO05D007085 6.2e-89 331.6 312 59.9
FAN10G2230 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-88 330.9 237 69.6
FAN01G0684 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.4e-88 330.5 237 69.6
Sc13g0010280 Simmondsia chinensis HOM05D005740 ORTHO05D007085 1.4e-88 330.5 246 67.1
Nitab4.5_0000115g0060 Nicotiana tabacum HOM05D005740 ORTHO05D007085 4.0e-88 328.9 255 66.7
PSO063G0961 Papaver somniferum HOM05D005740 ORTHO05D007085 5.2e-88 328.6 242 66.9
Ah.07g204700 Amaranthus hybridus HOM05D005740 ORTHO05D007085 6.8e-88 328.2 243 67.9
CDE02G4511 Ceratophyllum demersum HOM05D005740 ORTHO05D007085 8.9e-88 327.8 314 55.1
ATR1155G047 Amborella trichopoda HOM05D005740 ORTHO05D007085 1.2e-87 327.4 234 69.2
FAN03G0834 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.5e-87 327.0 227 71.4
PSO782G4352 Papaver somniferum HOM05D005740 ORTHO05D007085 1.5e-87 327.0 233 69.1
FvH4_7g32900 Fragaria vesca HOM05D005740 ORTHO05D007085 4.4e-87 325.5 237 70.9
unitig_748.g7278 Utricularia gibba HOM05D005740 ORTHO05D007085 4.4e-87 325.5 303 59.1
Aqoxy7G02158 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 7.6e-87 324.7 282 62.8
Migut.F00153 Erythranthe guttata HOM05D005740 ORTHO05D007085 1.3e-86 323.9 223 71.3
RcHm_v2.0_Chr1g0382861 Rosa chinensis HOM05D005740 ORTHO05D007085 1.7e-86 323.6 244 68.0
C01p22930 Brassica napus HOM05D005740 ORTHO05D007085 2.9e-86 322.8 274 67.2
Actinidia34269 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.4e-85 320.5 241 64.3
Peaxi162Scf00618g00020 Petunia axillaris HOM05D005740 ORTHO05D007085 2.1e-84 316.6 241 68.0
Actinidia28282 Actinidia chinensis HOM05D005740 ORTHO05D007085 1.7e-83 313.5 244 67.6
MELO3C023190.2 Cucumis melo HOM05D005740 ORTHO05D007085 1.7e-83 313.5 220 71.8
Migut.F00988 Erythranthe guttata HOM05D005740 ORTHO05D007085 5.1e-83 312.0 226 67.3
HPP92_015050 Vanilla planifolia HOM05D005740 ORTHO05D007085 9.6e-82 307.8 274 59.1
Rhsim03G0215400 Rhododendron simsii HOM05D005740 ORTHO05D007085 1.4e-80 303.9 239 63.2
AUR62006005 Chenopodium quinoa HOM05D005740 ORTHO05D007085 2.0e-79 300.1 221 67.9
A06p35310 Brassica napus HOM05D005740 ORTHO05D007085 3.4e-79 299.3 205 76.1
BraA06t26457Z Brassica rapa HOM05D005740 ORTHO05D007085 3.4e-79 299.3 205 76.1
Lj3A895G46 Lonicera japonica HOM05D005740 ORTHO05D007085 3.8e-78 295.8 253 61.7
TPR.G33623 Trifolium pratense HOM05D005740 ORTHO05D007085 3.2e-77 292.7 215 66.5
vmacro06441 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 7.1e-77 291.6 312 51.9
vmacro22782 Vaccinium macrocarpon HOM05D005740 ORTHO05D007085 1.2e-76 290.8 314 51.6
Hund09713 Selenicereus undatus HOM05D005740 ORTHO05D007085 3.3e-74 282.7 313 51.4
Aqoxy7G02157 Aquilegia oxysepala HOM05D005740 ORTHO05D007085 2.8e-73 279.6 210 67.1
Os03g0856500 Oryza sativa ssp. japonica HOM05D005740 ORTHO05D007085 5.3e-72 275.4 264 55.7
Zm00001eb064950 Zea mays HOM05D005740 ORTHO05D007085 6.9e-72 275.0 253 56.1
AagrBONN_evm.TU.Sc2ySwM_362.2025 Anthoceros agrestis HOM05D005740 ORTHO05D007085 1.5e-66 257.3 248 54.8
Mapoly0136s0019 Marchantia polymorpha HOM05D005740 ORTHO05D007085 6.2e-65 251.9 247 53.8
Pp3c18_22260 Physcomitrium patens HOM05D005740 ORTHO05D007085 3.1e-64 249.6 222 57.7
CBR_g44535 Chara braunii HOM05D005740 ORTHO05D007085 1.2e-63 247.7 235 54.5
Pp3c21_1350 Physcomitrium patens HOM05D005740 ORTHO05D007085 1.2e-63 247.7 222 58.1
Atru.chr12.2428 Acer truncatum HOM05D005740 ORTHO05D007085 6.4e-62 241.9 216 62.0
CAN.G65.152 Capsicum annuum HOM05D005740 ORTHO05D007085 2.3e-59 233.4 184 67.4
SMO145G0182 Selaginella moellendorffii HOM05D005740 ORTHO05D007085 2.5e-58 229.9 214 53.7
Dinv29211 Davidia involucrata HOM05D005740 ORTHO05D007085 4.8e-57 225.7 221 59.7
FAN10G1912 Fragaria x ananassa HOM05D005740 ORTHO05D007085 1.1e-53 214.5 169 63.9
Actinidia08698 Actinidia chinensis HOM05D005740 ORTHO05D007085 4.2e-53 212.6 213 54.9
Potri.012G026375 Populus trichocarpa HOM05D005740 ORTHO05D007085 5.1e-51 205.7 172 61.0
C01p22950 Brassica napus HOM05D005740 ORTHO05D007085 4.5e-47 192.6 154 69.5
MCO12G039 Micromonas commoda HOM05D005740 ORTHO05D007085 4.4e-34 149.4 209 41.1
Potri.012G009001 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.8e-33 146.7 123 61.8
Cre05.g237450 Chlamydomonas reinhardtii HOM05D005740 ORTHO05D007085 1.8e-32 144.1 233 38.6
Potri.011G055100 Populus trichocarpa HOM05D005740 ORTHO05D007085 6.9e-32 142.1 191 45.5
BolC1t02230H Brassica oleracea HOM05D005740 ORTHO05D007085 3.2e-29 133.3 70 91.4
PRCOL_00006097 Prasinoderma coloniale HOM05D005740 ORTHO05D007085 1.4e-24 117.9 209 30.6
CAN.G65.153 Capsicum annuum HOM05D000273 ORTHO05D000198 1.6e-20 104.4 74 68.9
C01p22960 Brassica napus HOM05D017401 ORTHO05D020044 2.3e-19 100.5 120 54.2
Potri.011G054700 Populus trichocarpa HOM05D005740 ORTHO05D007085 2.8e-17 93.6 87 52.9
C01p22940 Brassica napus HOM05D005740 ORTHO05D007085 5.3e-16 89.4 49 85.7
Sabra12G0002000 Salix brachista HOM05D000053 ORTHO05D000035 8.5e-14 82.0 81 58.0
Sabra12G0002700 Salix brachista HOM05D005740 ORTHO05D000035 3.2e-13 80.1 131 42.7
MBI08_g17822_MAGBIO Magnolia biondii HOM05D005740 ORTHO05D007085 1.6e-12 77.8 52 71.2
Sabra12G0007800 Salix brachista HOM05D000053 ORTHO05D000035 1.2e-10 71.6 48 72.9
Sabra12G0002200 Salix brachista HOM05D005740 ORTHO05D007085 5.7e-10 69.3 70 57.1
Sabra12G0002900 Salix brachista HOM05D005740 ORTHO05D007085 2.8e-09 67.0 45 73.3
Pp3c3_26240 Physcomitrium patens HOM05D005740 ORTHO05D007085 2.9e-06 57.0 60 48.3


User provided reference genes

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