Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p20590 Brassica napus HOM05D003931 ORTHO05D004577 5.0e-173 610.9 291 100.0
C08p10100 Brassica napus HOM05D003931 ORTHO05D004577 2.7e-166 588.6 289 97.9
BolC8t48689H Brassica oleracea HOM05D003931 ORTHO05D004577 2.7e-166 588.6 289 97.9
BraA08t34015Z Brassica rapa HOM05D003931 ORTHO05D004577 3.9e-165 584.7 286 97.9
BcaC07g38266 Brassica carinata HOM05D003931 ORTHO05D004577 1.1e-164 583.2 286 97.9
BcaC07g38264 Brassica carinata HOM05D003931 ORTHO05D004577 3.3e-164 581.6 286 97.6
BcaB03g12523 Brassica carinata HOM05D003931 ORTHO05D004577 3.6e-155 551.6 286 92.7
Sp7g25000 Schrenkiella parvula HOM05D003931 ORTHO05D004577 1.6e-131 473.0 286 80.1
Thhalv10025879m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 7.4e-124 447.6 287 76.3
Thhalv10027264m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 2.9e-120 435.6 285 75.4
Sp7g25010 Schrenkiella parvula HOM05D003931 ORTHO05D004577 6.5e-120 434.5 284 75.0
Thhalv10026787m.g Eutrema salsugineum HOM05D003931 ORTHO05D004577 1.2e-118 430.3 285 72.6
BcaB03g12524 Brassica carinata HOM05D003931 ORTHO05D004577 2.7e-118 429.1 285 74.4
BolC8t48691H Brassica oleracea HOM05D003931 ORTHO05D004577 1.8e-117 426.4 201 99.0
Sp7g24990 Schrenkiella parvula HOM05D003931 ORTHO05D004577 3.0e-117 425.6 283 72.1
BraA08t34014Z Brassica rapa HOM05D003931 ORTHO05D004577 8.7e-117 424.1 285 73.0
A08p20580 Brassica napus HOM05D003931 ORTHO05D004577 1.9e-116 422.9 285 72.6
BolC1t02250H Brassica oleracea HOM05D003931 ORTHO05D004577 5.7e-116 421.4 288 72.9
Carub.0007s1381 Capsella rubella HOM05D003931 ORTHO05D004577 6.3e-115 417.9 303 69.6
A01p18190 Brassica napus HOM05D003931 ORTHO05D004577 2.4e-114 416.0 288 72.6
AL4G12480 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 3.1e-114 415.6 284 71.1
BraA01t01774Z Brassica rapa HOM05D003931 ORTHO05D004577 9.0e-114 414.1 288 71.9
BcaC07g38267 Brassica carinata HOM05D003931 ORTHO05D004577 1.2e-113 413.7 285 71.2
C08p10140 Brassica napus HOM05D003931 ORTHO05D004577 1.2e-113 413.7 285 71.2
BolC8t48692H Brassica oleracea HOM05D003931 ORTHO05D004577 1.2e-113 413.7 285 71.2
AT4G27030 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 1.5e-113 413.3 314 67.2
C01p23150 Brassica napus HOM05D003931 ORTHO05D004577 1.7e-112 409.8 290 71.0
Aa31LG5G10360 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.9e-112 409.1 292 71.6
AL7G25800 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 1.9e-111 406.4 314 66.2
AT2G22890 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 5.5e-111 404.8 287 69.3
C07p55050 Brassica napus HOM05D003931 ORTHO05D004577 7.9e-110 401.0 283 69.6
BolC7t46007H Brassica oleracea HOM05D003931 ORTHO05D004577 1.5e-108 396.7 283 68.9
CARHR049940 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.5e-108 396.7 286 67.8
A03p57020 Brassica napus HOM05D003931 ORTHO05D004577 9.7e-108 394.0 283 67.5
CARHR234700 Cardamine hirsuta HOM05D003931 ORTHO05D004577 1.1e-106 390.6 314 64.3
BcaC06g32716 Brassica carinata HOM05D003931 ORTHO05D004577 1.8e-106 389.8 283 68.2
BraA03t14771Z Brassica rapa HOM05D003931 ORTHO05D004577 2.4e-106 389.4 283 66.4
Carub.0002s0286 Capsella rubella HOM05D003931 ORTHO05D004577 6.9e-106 387.9 287 65.9
AT1G62190 Arabidopsis thaliana HOM05D003931 ORTHO05D004577 9.4e-103 377.5 287 65.5
Aa31LG5G10380 Aethionema arabicum HOM05D003931 ORTHO05D004577 2.7e-102 375.9 289 63.0
Carub.0004s0202 Capsella rubella HOM05D003931 ORTHO05D004577 2.9e-96 355.9 236 71.2
THA.LOC104809192 Tarenaya hassleriana HOM05D003931 ORTHO05D004577 6.3e-91 338.2 271 63.5
Manes.15G073200 Manihot esculenta HOM05D003931 ORTHO05D004577 2.4e-90 336.3 295 58.0
MD03G1205300 Malus domestica HOM05D003931 ORTHO05D004577 2.6e-89 332.8 310 54.8
TWI38G0918 Tripterygium wilfordii HOM05D003931 ORTHO05D004577 2.6e-89 332.8 277 59.2
CiPaw.11G187800 Carya illinoinensis HOM05D003931 ORTHO05D004577 8.5e-88 327.8 296 56.8
CsaV3_3G005230 Cucumis sativus L. HOM05D003931 ORTHO05D004577 8.5e-88 327.8 303 53.8
Ciclev10009005m.g Citrus clementina HOM05D003931 ORTHO05D004577 2.1e-86 323.2 304 55.3
FAN21G1679 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.1e-86 323.2 294 56.8
FAN21G3611 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.1e-86 323.2 294 56.8
Ah.04g165790 Amaranthus hybridus HOM05D003931 ORTHO05D004577 3.6e-86 322.4 268 56.3
ClCG10G005490 Citrullus lanatus HOM05D003931 ORTHO05D004577 3.6e-86 322.4 305 53.1
FvH4_3g22400 Fragaria vesca HOM05D003931 ORTHO05D004577 4.7e-86 322.0 294 56.5
FAN16G2486 Fragaria x ananassa HOM05D003931 ORTHO05D004577 4.7e-86 322.0 294 57.1
Migut.M01779 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.1e-86 321.6 271 57.6
MD11G1221200 Malus domestica HOM05D003931 ORTHO05D004577 6.1e-86 321.6 303 54.8
Potri.001G424700 Populus trichocarpa HOM05D003931 ORTHO05D004577 6.1e-86 321.6 269 60.2
Hma1.2p1_1271F.1_g271720 Hydrangea macrophylla HOM05D003931 ORTHO05D004577 8.0e-86 321.2 302 54.0
Glyma.18G099500 Glycine max HOM05D003931 ORTHO05D004577 1.8e-85 320.1 278 57.2
RcHm_v2.0_Chr5g0039071 Rosa chinensis HOM05D003931 ORTHO05D004577 1.8e-85 320.1 294 56.5
FAN11G2983 Fragaria x ananassa HOM05D003931 ORTHO05D004577 2.3e-85 319.7 294 56.5
Haze_09657 Corylus avellana HOM05D003931 ORTHO05D004577 3.0e-85 319.3 297 56.9
Sabra11G0123500 Salix brachista HOM05D003931 ORTHO05D004577 4.0e-85 318.9 298 54.0
MELO3C025390.2 Cucumis melo HOM05D003931 ORTHO05D004577 5.2e-85 318.5 303 52.5
Gorai.002G087700 Gossypium raimondii HOM05D003931 ORTHO05D004577 5.2e-85 318.5 281 55.9
QL08p011429 Quercus lobata HOM05D003931 ORTHO05D004577 6.7e-85 318.2 297 54.5
QL08p011634 Quercus lobata HOM05D003931 ORTHO05D004577 6.7e-85 318.2 297 54.5
QL08p011649 Quercus lobata HOM05D003931 ORTHO05D004577 6.7e-85 318.2 297 54.5
Gohir.D01G065800 Gossypium hirsutum HOM05D003931 ORTHO05D004577 1.5e-84 317.0 281 55.5
Lj6g0018199 Lotus japonicus HOM05D003931 ORTHO05D004577 2.0e-84 316.6 254 60.2
Lalb_Chr06g0171911 Lupinus albus HOM05D003931 ORTHO05D004577 2.6e-84 316.2 301 54.2
Gohir.A01G078700 Gossypium hirsutum HOM05D003931 ORTHO05D004577 4.4e-84 315.5 281 55.2
Cfa020372 Carpinus fangiana HOM05D003931 ORTHO05D004577 9.7e-84 314.3 291 55.7
Sabra16G0288300 Salix brachista HOM05D003931 ORTHO05D004577 1.3e-83 313.9 272 56.2
Atru.chr2.3378 Acer truncatum HOM05D003931 ORTHO05D004577 1.7e-83 313.5 304 52.6
Sed0028072 Sechium edule HOM05D003931 ORTHO05D004577 1.7e-83 313.5 245 58.4
HanXRQChr05g0159031 Helianthus annuus HOM05D003931 ORTHO05D004577 2.2e-83 313.2 270 55.9
Actinidia09908 Actinidia chinensis HOM05D003931 ORTHO05D004577 2.8e-83 312.8 268 56.7
Ca_14721_v3 Cicer arietinum L. HOM05D003931 ORTHO05D004577 3.7e-83 312.4 272 57.7
Aqoxy1G03269 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 4.8e-83 312.0 255 58.8
Glyma.08G314700 Glycine max HOM05D003931 ORTHO05D004577 4.8e-83 312.0 296 53.4
EL10Ac4g07844 Beta vulgaris HOM05D003931 ORTHO05D004577 1.1e-82 310.8 266 55.3
Lsat_1_v5_gn_5_6120 Lactuca sativa HOM05D003931 ORTHO05D004577 1.1e-82 310.8 260 58.1
Lalb_Chr02g0155621 Lupinus albus HOM05D003931 ORTHO05D004577 1.1e-82 310.8 273 56.8
Prupe.4G210600 Prunus persica HOM05D003931 ORTHO05D004577 1.4e-82 310.5 299 54.2
TPR.G16574 Trifolium pratense HOM05D003931 ORTHO05D004577 4.1e-82 308.9 273 56.0
VMungo0540G1582 Vigna mungo HOM05D003931 ORTHO05D004577 4.1e-82 308.9 268 56.0
arahy.Tifrunner.gnm1.ann1.07EMGU Arachis hypogaea HOM05D003931 ORTHO05D004577 9.1e-82 307.8 228 62.3
CANSAT64G1454 Cannabis sativa HOM05D003931 ORTHO05D004577 9.1e-82 307.8 266 54.1
Eucgr.F00963 Eucalyptus grandis HOM05D003931 ORTHO05D004577 9.1e-82 307.8 275 55.3
Phvul.006G040800 Phaseolus vulgaris HOM05D003931 ORTHO05D004577 1.2e-81 307.4 270 56.3
AUR62015742 Chenopodium quinoa HOM05D003931 ORTHO05D004577 2.0e-81 306.6 273 54.6
Dinv40740 Davidia involucrata HOM05D003931 ORTHO05D004577 2.0e-81 306.6 230 62.2
Lsat_1_v5_gn_5_6180 Lactuca sativa HOM05D003931 ORTHO05D004577 2.0e-81 306.6 278 53.2
Thecc.07G042800 Theobroma cacao HOM05D003931 ORTHO05D004577 2.0e-81 306.6 229 62.4
Medtr3g051220 Medicago truncatula HOM05D003931 ORTHO05D004577 4.5e-81 305.4 253 57.7
TAR626G0527 Trochodendron aralioides HOM05D003931 ORTHO05D004577 1.3e-80 303.9 285 53.0
vmacro11735 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 2.9e-80 302.8 225 63.6
Nn1g03571 Nelumbo nucifera HOM05D003931 ORTHO05D004577 3.8e-80 302.4 228 62.3
Oeu042929.1 Olea europaea HOM05D003931 ORTHO05D004577 5.0e-80 302.0 295 51.5
AUR62020469 Chenopodium quinoa HOM05D003931 ORTHO05D004577 1.1e-79 300.8 296 50.7
Psat5g180680 Pisum sativum HOM05D003931 ORTHO05D004577 1.1e-79 300.8 256 57.0
SGA_v2.0_scaffold172G38997 Striga asiatica HOM05D003931 ORTHO05D004577 1.9e-79 300.1 279 54.5
PGR083G2742 Punica granatum HOM05D003931 ORTHO05D004577 4.2e-79 298.9 233 60.1
Sc03g0008690 Simmondsia chinensis HOM05D003931 ORTHO05D004577 5.5e-79 298.5 300 50.3
MSTRG.6909 Avicennia marina HOM05D003931 ORTHO05D004577 7.2e-79 298.1 229 59.0
Lj1C870G17 Lonicera japonica HOM05D003931 ORTHO05D004577 2.1e-78 296.6 251 56.6
unitig_62.g23279 Utricularia gibba HOM05D003931 ORTHO05D004577 1.0e-77 294.3 282 51.4
Cc05_g13590 Coffea canephora HOM05D003931 ORTHO05D004577 1.4e-77 293.9 219 62.6
Cfa009708 Carpinus fangiana HOM05D003931 ORTHO05D004577 2.3e-77 293.1 219 62.6
Nitab4.5_0001604g0100 Nicotiana tabacum HOM05D003931 ORTHO05D004577 3.0e-77 292.7 281 52.0
Sc03g0008680 Simmondsia chinensis HOM05D003931 ORTHO05D004577 2.0e-76 290.0 268 54.1
Duzib213G0550 Durio zibethinus HOM05D003931 ORTHO05D004577 4.4e-76 288.9 282 51.1
Atru.chr2.3337 Acer truncatum HOM05D003931 ORTHO05D004577 4.8e-75 285.4 233 58.8
PSO675G5012 Papaver somniferum HOM05D003931 ORTHO05D004577 6.3e-75 285.0 281 50.9
Solyc07g064410.1 Solanum lycopersicum HOM05D003931 ORTHO05D004577 1.1e-74 284.3 251 51.8
CAN.G337.115 Capsicum annuum HOM05D003931 ORTHO05D004577 1.8e-74 283.5 267 50.6
Lsat_1_v5_gn_5_5140 Lactuca sativa HOM05D003931 ORTHO05D004577 1.8e-74 283.5 259 52.1
PGSC0003DMG400022225 Solanum tuberosum HOM05D003931 ORTHO05D004577 2.4e-74 283.1 225 55.6
Sopen07g032620 Solanum pennellii HOM05D003931 ORTHO05D004577 4.1e-74 282.3 225 54.7
Atru.chr2.3340 Acer truncatum HOM05D003931 ORTHO05D004577 5.4e-74 282.0 225 59.6
Sc03g0008670 Simmondsia chinensis HOM05D003931 ORTHO05D004577 9.1e-74 281.2 295 48.1
PSO541G1838 Papaver somniferum HOM05D003931 ORTHO05D004577 1.2e-73 280.8 282 50.0
QL08p011463 Quercus lobata HOM05D003931 ORTHO05D004577 1.2e-73 280.8 230 58.7
Haze_23062 Corylus avellana HOM05D003931 ORTHO05D004577 2.0e-73 280.0 226 59.7
Peaxi162Scf00450g00075 Petunia axillaris HOM05D003931 ORTHO05D004577 2.7e-73 279.6 211 59.7
ATR0752G116 Amborella trichopoda HOM05D003931 ORTHO05D004577 4.0e-69 265.8 225 56.0
Rhsim06G0216100 Rhododendron simsii HOM05D003931 ORTHO05D004577 5.2e-69 265.4 190 65.8
Prupe.4G210500 Prunus persica HOM05D003931 ORTHO05D004577 1.5e-68 263.8 204 59.8
vmacro11734 Vaccinium macrocarpon HOM05D003931 ORTHO05D004577 1.5e-68 263.8 225 53.8
DCAR_008677 Daucus carota HOM05D003931 ORTHO05D004577 2.0e-68 263.5 226 54.9
AUR62015741 Chenopodium quinoa HOM05D003931 ORTHO05D004577 5.7e-68 261.9 252 46.4
Lj6g0018599 Lotus japonicus HOM05D003931 ORTHO05D004577 2.8e-67 259.6 289 46.0
Nitab4.5_0004336g0020 Nicotiana tabacum HOM05D003931 ORTHO05D004577 4.9e-67 258.8 257 51.8
CDE05G0277 Ceratophyllum demersum HOM05D003931 ORTHO05D007395 1.4e-66 257.3 225 50.7
PGSC0003DMG400004435 Solanum tuberosum HOM05D003931 ORTHO05D004577 7.0e-66 255.0 249 49.8
Oeu062594.1 Olea europaea HOM05D003931 ORTHO05D004577 9.2e-66 254.6 228 50.9
CANSAT11G0562 Cannabis sativa HOM05D003931 ORTHO05D004577 2.7e-65 253.1 227 53.7
CSS0050113 Camellia sinensis var. sinensis HOM05D003931 ORTHO05D004577 2.0e-60 236.9 188 59.0
Cpa.g.sc97.27 Carica papaya HOM05D003931 ORTHO05D004577 7.5e-60 235.0 234 53.0
Mapoly0034s0071 Marchantia polymorpha HOM05D003931 ORTHO05D004577 2.2e-59 233.4 225 46.2
SMO364G0503 Selaginella moellendorffii HOM05D003931 ORTHO05D004577 9.2e-58 228.0 227 48.9
SEGI_34207 Sequoiadendron giganteum HOM05D003931 ORTHO05D004577 1.2e-57 227.6 227 48.0
CANSAT11G1176 Cannabis sativa HOM05D003931 ORTHO05D004577 4.6e-57 225.7 220 49.1
COL.COLO4_09644 Corchorus olitorius HOM05D003931 ORTHO05D004577 1.3e-56 224.2 279 45.5
AagrBONN_evm.TU.Sc2ySwM_368.1941 Anthoceros agrestis HOM05D003931 ORTHO05D004577 2.5e-55 219.9 273 43.6
Pp3c13_12570 Physcomitrium patens HOM05D003931 ORTHO05D004577 2.5e-55 219.9 224 45.1
Zm00001eb413170 Zea mays HOM05D003931 ORTHO05D004577 7.3e-55 218.4 272 42.6
Aqoxy1G03270 Aquilegia oxysepala HOM05D003931 ORTHO05D004577 9.5e-55 218.0 218 49.1
Eucgr.L01106 Eucalyptus grandis HOM05D003931 ORTHO05D004577 1.6e-54 217.2 266 44.0
C08p10120 Brassica napus HOM05D003931 ORTHO05D004577 1.2e-52 211.1 97 99.0
QL09p032903 Quercus lobata HOM05D003931 ORTHO05D004577 8.3e-51 204.9 155 61.9
Cfa009711 Carpinus fangiana HOM05D003931 ORTHO05D004577 5.4e-50 202.2 174 58.6
FAN11G0561 Fragaria x ananassa HOM05D003931 ORTHO05D004577 1.6e-49 200.7 235 45.5
Os08g0187900 Oryza sativa ssp. japonica HOM05D003931 ORTHO05D004577 4.6e-49 199.1 279 40.5
SGA_v2.0_scaffold9G05067 Striga asiatica HOM05D003931 ORTHO05D004577 6.6e-48 195.3 235 43.4
Cre16.g673001 Chlamydomonas reinhardtii HOM05D003931 ORTHO05D004577 8.1e-46 188.3 225 40.9
Migut.H01834 Erythranthe guttata HOM05D003931 ORTHO05D004577 3.4e-44 183.0 226 43.8
MCO05G373 Micromonas commoda HOM05D003931 ORTHO05D004577 4.4e-44 182.6 178 47.2
SGA_v2.0_scaffold9G05070 Striga asiatica HOM05D003931 ORTHO05D004577 5.8e-44 182.2 241 40.2
Haze_23061 Corylus avellana HOM05D003931 ORTHO05D004577 3.7e-43 179.5 150 58.0
Migut.H01835 Erythranthe guttata HOM05D003931 ORTHO05D004577 6.4e-43 178.7 236 40.3
CDE05G0281 Ceratophyllum demersum HOM05D003931 ORTHO05D004577 5.4e-42 175.6 155 51.0
FvH4_3g22391 Fragaria vesca HOM05D003931 ORTHO05D004577 5.4e-42 175.6 186 46.8
PRCOL_00003954 Prasinoderma coloniale HOM05D003931 ORTHO05D004577 1.0e-40 171.4 213 40.4
Zm00001eb413200 Zea mays HOM05D003931 ORTHO05D004577 1.3e-40 171.0 231 41.6
unitig_749.g13966 Utricularia gibba HOM05D003931 ORTHO05D004577 6.6e-40 168.7 215 40.5
CBR_g30523 Chara braunii HOM05D003931 ORTHO05D004577 2.5e-39 166.8 306 32.7
Migut.H01836 Erythranthe guttata HOM05D003931 ORTHO05D004577 4.7e-38 162.5 230 40.0
COL.COLO4_07219 Corchorus olitorius HOM05D003931 ORTHO05D004577 2.6e-36 156.8 124 58.9
ECA246G1165 Erigeron canadensis HOM05D003931 ORTHO05D004577 1.7e-35 154.1 149 49.7
C01p23190 Brassica napus HOM05D003931 ORTHO05D004577 2.5e-31 140.2 87 72.4
AL3G48190 Arabidopsis lyrata HOM05D003931 ORTHO05D004577 8.1e-30 135.2 96 63.5
COL.COLO4_07218 Corchorus olitorius HOM05D003931 ORTHO05D004577 5.3e-29 132.5 108 59.3
BcaC06g32715 Brassica carinata HOM05D003931 ORTHO05D004577 5.5e-10 69.3 50 66.0
unitig_26.g9960 Utricularia gibba HOM05D003931 ORTHO05D004577 4.6e-09 66.2 91 40.7


User provided reference genes

Program Settings