Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p20090 Brassica napus HOM05D004354 ORTHO05D005409 0.0e+00 1154.4 566 100.0
BraA08t33968Z Brassica rapa HOM05D004354 ORTHO05D005409 0.0e+00 1149.4 566 99.6
C08p10830 Brassica napus HOM05D004354 ORTHO05D005409 0.0e+00 1140.9 566 98.8
BolC8t48758H Brassica oleracea HOM05D004354 ORTHO05D005409 0.0e+00 1140.2 566 98.6
BcaC07g38328 Brassica carinata HOM05D004354 ORTHO05D005409 0.0e+00 1139.0 566 98.6
BcaB03g12570 Brassica carinata HOM05D004354 ORTHO05D005409 0.0e+00 1118.2 566 95.9
Thhalv10024798m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 5.2e-307 1057.0 566 91.3
AT4G28370 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.8e-305 1051.2 566 90.1
AL7G24220 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 4.5e-303 1043.9 566 89.4
CARHR236110 Cardamine hirsuta HOM05D004354 ORTHO05D005409 5.9e-303 1043.5 566 90.1
Carub.0007s1237 Capsella rubella HOM05D004354 ORTHO05D005409 1.2e-298 1029.2 566 88.3
Sp7g26330 Schrenkiella parvula HOM05D004354 ORTHO05D005409 2.5e-285 984.9 566 86.2
Aa31LG2G22230 Aethionema arabicum HOM05D004354 ORTHO05D005409 1.2e-282 976.1 566 84.5
THA.LOC104804057 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 2.3e-278 961.8 566 82.3
Aa31LG8G17560 Aethionema arabicum HOM05D004354 ORTHO05D005409 7.3e-277 956.8 566 81.4
Thhalv10002192m.g Eutrema salsugineum HOM05D004354 ORTHO05D005409 8.0e-276 953.4 553 82.6
AL3G53730 Arabidopsis lyrata HOM05D004354 ORTHO05D005409 9.8e-274 946.4 566 81.1
Carub.0003s3517 Capsella rubella HOM05D004354 ORTHO05D005409 1.7e-273 945.7 567 80.8
AT2G20650 Arabidopsis thaliana HOM05D004354 ORTHO05D005409 2.7e-271 938.3 566 80.6
Sp3g33900 Schrenkiella parvula HOM05D004354 ORTHO05D005409 1.1e-269 932.9 559 81.4
BcaB03g16858 Brassica carinata HOM05D004354 ORTHO05D005409 4.1e-264 914.4 560 79.6
BraA07t27805Z Brassica rapa HOM05D004354 ORTHO05D005409 1.6e-263 912.5 559 80.5
BcaC06g36756 Brassica carinata HOM05D004354 ORTHO05D005409 3.5e-263 911.4 559 79.8
C07p00280 Brassica napus HOM05D004354 ORTHO05D005409 3.5e-263 911.4 559 80.0
BolC7t40478H Brassica oleracea HOM05D004354 ORTHO05D005409 3.5e-263 911.4 559 79.8
CiPaw.03G179000 Carya illinoinensis HOM05D004354 ORTHO05D005409 3.5e-263 911.4 556 77.9
QL08p039658 Quercus lobata HOM05D004354 ORTHO05D005409 6.0e-263 910.6 555 78.0
Thecc.02G182400 Theobroma cacao HOM05D004354 ORTHO05D005409 2.3e-262 908.7 572 76.9
COL.COLO4_05947 Corchorus olitorius HOM05D004354 ORTHO05D005409 4.3e-261 904.4 574 76.3
Manes.13G144800 Manihot esculenta HOM05D004354 ORTHO05D005409 5.6e-261 904.0 555 78.4
Cfa014637 Carpinus fangiana HOM05D004354 ORTHO05D005409 2.1e-260 902.1 559 77.3
Gohir.A03G155600 Gossypium hirsutum HOM05D004354 ORTHO05D005409 8.1e-260 900.2 555 78.2
TWI23G0225 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 5.2e-259 897.5 558 76.3
Dinv04814 Davidia involucrata HOM05D004354 ORTHO05D005409 1.2e-258 896.3 555 78.0
Gorai.005G200400 Gossypium raimondii HOM05D004354 ORTHO05D005409 1.5e-258 896.0 555 77.8
Gohir.D02G178700 Gossypium hirsutum HOM05D004354 ORTHO05D005409 2.0e-258 895.6 555 77.8
CSS0014582 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 3.4e-258 894.8 561 75.9
Rhsim06G0139400 Rhododendron simsii HOM05D004354 ORTHO05D005409 7.6e-258 893.6 542 77.7
Prupe.3G139300 Prunus persica HOM05D004354 ORTHO05D005409 1.3e-257 892.9 550 77.3
Potri.017G012600 Populus trichocarpa HOM05D004354 ORTHO05D005409 1.4e-256 889.4 556 75.9
Ciclev10014745m.g Citrus clementina HOM05D004354 ORTHO05D005409 5.4e-256 887.5 554 76.5
RcHm_v2.0_Chr2g0127681 Rosa chinensis HOM05D004354 ORTHO05D005409 1.2e-255 886.3 566 75.1
Dinv13394 Davidia involucrata HOM05D004354 ORTHO05D005409 3.5e-255 884.8 550 76.9
THA.LOC104824696 Tarenaya hassleriana HOM05D004354 ORTHO05D005409 6.0e-255 884.0 564 77.5
GSVIVG01020571001 Vitis vinifera HOM05D004354 ORTHO05D005409 7.8e-255 883.6 555 75.7
Cc05_g07440 Coffea canephora HOM05D004354 ORTHO05D005409 1.0e-254 883.2 554 76.5
Sc21g0003070 Simmondsia chinensis HOM05D004354 ORTHO05D005409 1.7e-254 882.5 557 74.9
CARHR111300 Cardamine hirsuta HOM05D004354 ORTHO05D005409 3.9e-254 881.3 518 82.8
FvH4_6g26490 Fragaria vesca HOM05D004354 ORTHO05D005409 6.6e-254 880.6 533 78.4
FAN05G5576 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.5e-253 879.4 561 75.8
Solyc07g053850.3 Solanum lycopersicum HOM05D004354 ORTHO05D005409 1.6e-252 875.9 552 75.7
MD09G1244500 Malus domestica HOM05D004354 ORTHO05D005409 2.1e-252 875.5 550 75.5
Sopen07g027820 Solanum pennellii HOM05D004354 ORTHO05D005409 2.1e-252 875.5 552 75.7
Hma1.2p1_0002F.1_g002080 Hydrangea macrophylla HOM05D004354 ORTHO05D005409 3.6e-252 874.8 550 76.4
A07p00120 Brassica napus HOM05D004354 ORTHO05D005409 4.8e-252 874.4 544 79.0
PGSC0003DMG400032816 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.4e-251 872.8 553 75.9
Glyma.13G295600 Glycine max HOM05D004354 ORTHO05D005409 4.0e-251 871.3 565 74.0
MD17G1236500 Malus domestica HOM05D004354 ORTHO05D005409 4.0e-251 871.3 544 76.3
VMungo1080G0203 Vigna mungo HOM05D004354 ORTHO05D005409 9.0e-251 870.2 556 75.0
FAN02G3736 Fragaria x ananassa HOM05D004354 ORTHO05D005409 1.2e-250 869.8 557 74.9
CSS0000262 Camellia sinensis var. sinensis HOM05D004354 ORTHO05D005409 2.6e-250 868.6 561 74.0
TWI59G0686 Tripterygium wilfordii HOM05D004354 ORTHO05D005409 2.6e-250 868.6 572 73.8
arahy.Tifrunner.gnm1.ann1.5TEV2E Arachis hypogaea HOM05D004354 ORTHO05D005409 2.2e-249 865.5 581 71.9
Phvul.005G102100 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 2.9e-249 865.1 556 75.0
Eucgr.K01043 Eucalyptus grandis HOM05D004354 ORTHO05D005409 6.4e-249 864.0 546 74.9
Potri.007G139300 Populus trichocarpa HOM05D004354 ORTHO05D005409 3.2e-248 861.7 556 75.2
PGR142G0821 Punica granatum HOM05D004354 ORTHO05D005409 4.2e-248 861.3 560 74.5
Actinidia11091 Actinidia chinensis HOM05D004354 ORTHO05D005409 5.4e-248 860.9 524 78.2
Sopen12g001470 Solanum pennellii HOM05D004354 ORTHO05D005409 9.3e-248 860.1 547 74.8
Glyma.12G205300 Glycine max HOM05D004354 ORTHO05D005409 3.5e-247 858.2 533 76.2
Lsat_1_v5_gn_4_66820 Lactuca sativa HOM05D004354 ORTHO05D005409 3.5e-247 858.2 558 73.5
MSTRG.6802 Avicennia marina HOM05D004354 ORTHO05D005409 4.6e-247 857.8 555 73.3
arahy.Tifrunner.gnm1.ann1.SG72Z3 Arachis hypogaea HOM05D004354 ORTHO05D005409 7.9e-247 857.1 588 70.6
Medtr4g078525 Medicago truncatula HOM05D004354 ORTHO05D005409 1.0e-246 856.7 563 72.8
CANSAT64G2319 Cannabis sativa HOM05D004354 ORTHO05D005409 1.3e-246 856.3 584 71.7
MELO3C013588.2 Cucumis melo HOM05D004354 ORTHO05D005409 1.3e-246 856.3 572 72.9
CsaV3_6G015220 Cucumis sativus L. HOM05D004354 ORTHO05D005409 1.3e-246 856.3 559 73.9
Solyc12g005470.2 Solanum lycopersicum HOM05D004354 ORTHO05D005409 2.3e-246 855.5 547 74.8
Lj3g0017215 Lotus japonicus HOM05D004354 ORTHO05D005409 3.9e-246 854.7 546 73.4
Ca_18937_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 5.1e-246 854.4 552 73.4
Lalb_Chr19g0135191 Lupinus albus HOM05D004354 ORTHO05D005409 8.7e-246 853.6 557 72.9
EL10Ac9g20792 Beta vulgaris HOM05D004354 ORTHO05D005409 2.5e-245 852.0 517 77.9
DCAR_009753 Daucus carota HOM05D004354 ORTHO05D005409 2.5e-245 852.0 550 74.0
Glyma.12G116100 Glycine max HOM05D004354 ORTHO05D005409 3.3e-245 851.7 542 74.2
Glyma.06G290800 Glycine max HOM05D004354 ORTHO05D005409 1.3e-244 849.7 542 74.0
Lj3g0011593 Lotus japonicus HOM05D004354 ORTHO05D005409 1.4e-243 846.3 548 74.3
Lj1A714G27 Lonicera japonica HOM05D004354 ORTHO05D005409 3.1e-243 845.1 555 73.3
Sed0026522 Sechium edule HOM05D004354 ORTHO05D005409 1.2e-242 843.2 572 71.9
Aqoxy1G02375 Aquilegia oxysepala HOM05D004354 ORTHO05D005409 3.4e-242 841.6 549 72.7
Phvul.011G119730 Phaseolus vulgaris HOM05D004354 ORTHO05D005409 7.6e-242 840.5 542 73.2
TPR.G2846 Trifolium pratense HOM05D004354 ORTHO05D005409 1.3e-241 839.7 563 71.4
Cpa.g.sc83.63 Carica papaya HOM05D004354 ORTHO05D005409 1.7e-241 839.3 579 71.8
ECA234G2175 Erigeron canadensis HOM05D004354 ORTHO05D005409 6.4e-241 837.4 532 74.6
Psat7g168720 Pisum sativum HOM05D004354 ORTHO05D005409 9.3e-240 833.6 551 72.1
Oeu036067.1 Olea europaea HOM05D004354 ORTHO05D005409 1.6e-239 832.8 552 71.9
Migut.M00279 Erythranthe guttata HOM05D004354 ORTHO05D005409 3.0e-238 828.6 547 70.2
HanXRQChr05g0143301 Helianthus annuus HOM05D004354 ORTHO05D005409 3.9e-238 828.2 551 71.3
vmacro12326 Vaccinium macrocarpon HOM05D004354 ORTHO05D005409 1.9e-237 825.9 533 74.1
Lalb_Chr03g0029541 Lupinus albus HOM05D004354 ORTHO05D005409 2.5e-237 825.5 557 70.7
PSO675G5152 Papaver somniferum HOM05D004354 ORTHO05D005409 3.3e-237 825.1 550 71.3
Lalb_Chr01g0005151 Lupinus albus HOM05D004354 ORTHO05D005409 4.3e-237 824.7 557 71.1
PSO541G1897 Papaver somniferum HOM05D004354 ORTHO05D005409 1.3e-236 823.2 550 71.3
Nitab4.5_0001184g0100 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.1e-236 822.4 547 72.8
Haze_13201 Corylus avellana HOM05D004354 ORTHO05D005409 1.4e-235 819.7 584 69.5
arahy.Tifrunner.gnm1.ann1.6AZK3P Arachis hypogaea HOM05D004354 ORTHO05D005409 9.0e-235 817.0 549 71.8
arahy.Tifrunner.gnm1.ann1.7S1AZB Arachis hypogaea HOM05D004354 ORTHO05D005409 1.2e-234 816.6 542 72.1
Hund01030 Selenicereus undatus HOM05D004354 ORTHO05D005409 1.2e-234 816.6 557 70.6
TAR626G1453 Trochodendron aralioides HOM05D004354 ORTHO05D005409 7.6e-234 813.9 536 73.1
Ca_09445_v3 Cicer arietinum L. HOM05D004354 ORTHO05D005409 8.4e-233 810.4 563 69.8
FAN14G3021 Fragaria x ananassa HOM05D004354 ORTHO05D005409 4.6e-231 804.7 533 73.9
FAN09G2589 Fragaria x ananassa HOM05D004354 ORTHO05D005409 6.2e-228 794.3 543 73.1
Nn1g06483 Nelumbo nucifera HOM05D004354 ORTHO05D005409 4.1e-227 791.6 522 73.4
Peaxi162Scf00008g00611 Petunia axillaris HOM05D004354 ORTHO05D005409 2.6e-226 788.9 552 69.9
MBI18_g19626_MAGBIO Magnolia biondii HOM05D004354 ORTHO05D005409 1.7e-225 786.2 549 69.9
Sed0007610 Sechium edule HOM05D004354 ORTHO05D005409 3.5e-223 778.5 495 75.6
ATR0763G074 Amborella trichopoda HOM05D004354 ORTHO05D005409 1.4e-211 740.0 505 69.9
PGSC0003DMG400013734 Solanum tuberosum HOM05D004354 ORTHO05D005409 1.4e-211 740.0 547 68.2
Nitab4.5_0000638g0120 Nicotiana tabacum HOM05D004354 ORTHO05D005409 6.9e-211 737.6 515 70.1
Peaxi162Scf01415g00030 Petunia axillaris HOM05D004354 ORTHO05D005409 1.0e-209 733.8 536 67.7
ClCG02G017760 Citrullus lanatus HOM05D004354 ORTHO05D005409 1.1e-208 730.3 582 65.3
SGA_v2.0_scaffold70G23519 Striga asiatica HOM05D004354 ORTHO05D005409 8.8e-206 720.7 567 63.5
unitig_22.g5828 Utricularia gibba HOM05D004354 ORTHO05D005409 2.6e-205 719.2 556 63.3
Nitab4.5_0006194g0010 Nicotiana tabacum HOM05D004354 ORTHO05D005409 4.7e-199 698.4 547 64.5
Nitab4.5_0001752g0070 Nicotiana tabacum HOM05D004354 ORTHO05D005409 2.2e-193 679.5 478 70.3
Pp3c21_16510 Physcomitrium patens HOM05D004354 ORTHO05D005409 1.4e-187 660.2 553 62.4
Pp3c18_8870 Physcomitrium patens HOM05D004354 ORTHO05D005409 9.1e-187 657.5 582 59.1
Zm00001eb322160 Zea mays HOM05D004354 ORTHO05D005409 1.6e-186 656.8 416 76.2
Mapoly0093s0076 Marchantia polymorpha HOM05D004354 ORTHO05D005409 3.8e-185 652.1 549 60.3
SMO351G0175 Selaginella moellendorffii HOM05D004354 ORTHO05D005409 4.9e-180 635.2 578 58.3
Actinidia11016 Actinidia chinensis HOM05D004354 ORTHO05D005409 5.1e-137 492.3 333 73.6
CDE05G0895 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.2e-131 473.0 278 79.1
Atru.chr6.2897 Acer truncatum HOM05D004354 ORTHO05D005409 1.8e-126 457.2 263 84.0
TAR627G0070 Trochodendron aralioides HOM05D004354 ORTHO05D005409 2.3e-121 440.3 310 69.0
AUR62033734 Chenopodium quinoa HOM05D004354 ORTHO05D005409 5.6e-120 435.6 360 62.2
CBR_g36920 Chara braunii HOM05D004354 ORTHO05D005409 1.3e-119 434.5 519 49.1
HPP92_012418 Vanilla planifolia HOM05D004354 ORTHO05D005409 1.0e-116 424.9 339 63.7
AUR62033735 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.0e-108 398.3 294 67.0
AUR62038896 Chenopodium quinoa HOM05D004354 ORTHO05D005409 3.0e-97 360.1 217 78.8
SEGI_11328 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.0e-93 347.4 217 71.0
SGA_v2.0_scaffold34G13945 Striga asiatica HOM05D004354 ORTHO05D005409 4.2e-91 339.7 301 58.1
Os07g0501900 Oryza sativa ssp. japonica HOM05D004354 ORTHO05D005409 5.9e-85 319.3 309 54.0
AUR62038895 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.8e-78 297.7 251 62.2
PRCOL_00005121 Prasinoderma coloniale HOM05D000722 ORTHO05D000590 2.0e-77 294.3 566 33.0
SGA_v2.0_scaffold4316G54468 Striga asiatica HOM05D004354 ORTHO05D005409 8.5e-76 288.9 198 72.2
CDE05G0163 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 7.0e-70 269.2 201 66.7
Cre08.g381900 Chlamydomonas reinhardtii HOM05D004354 ORTHO05D005409 1.7e-60 238.0 424 32.5
SEGI_25482 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 3.6e-58 230.3 145 71.0
MCO03G390 Micromonas commoda HOM05D004354 ORTHO05D005409 2.4e-54 217.6 228 47.8
Atru.chr6.2898 Acer truncatum HOM05D004354 ORTHO05D005409 4.3e-43 180.3 122 68.0
CDE05G2312 Ceratophyllum demersum HOM05D004354 ORTHO05D005409 3.4e-32 144.1 128 53.1
AUR62038894 Chenopodium quinoa HOM05D004354 ORTHO05D005409 1.5e-27 128.6 116 55.2
LjContig00564g0000671 Lotus japonicus HOM05D000084 ORTHO05D000363 1.5e-27 128.6 101 57.4
arahy.Tifrunner.gnm1.ann1.56HDLZ Arachis hypogaea HOM05D004354 ORTHO05D005409 7.3e-27 126.3 100 58.0
SEGI_31944 Sequoiadendron giganteum HOM05D004354 ORTHO05D005409 2.4e-25 121.3 106 52.8
TPR.G10974 Trifolium pratense HOM05D004354 ORTHO05D005409 5.8e-24 116.7 81 63.0
SGA_v2.0_scaffold70G23386 Striga asiatica HOM05D004354 ORTHO05D005409 7.1e-22 109.8 102 56.9
Nn1g04142 Nelumbo nucifera HOM05D004354 ORTHO05D005409 3.1e-17 94.4 56 75.0
TAR627G0937 Trochodendron aralioides HOM05D004354 ORTHO05D005409 6.9e-17 93.2 54 68.5
Ciclev10013591m.g Citrus clementina HOM05D004354 ORTHO05D005409 7.4e-11 73.2 43 74.4
Cfa022079 Carpinus fangiana HOM05D004354 ORTHO05D124722 1.7e-07 62.0 73 34.2
Glyma.14G107350 Glycine max HOM05D004354 ORTHO05D005409 3.8e-07 60.8 57 49.1
Ciclev10023831m.g Citrus clementina HOM05D000082 ORTHO05D000038 2.4e-06 58.2 75 34.7
FvH4_1g03410 Fragaria vesca HOM05D012452 ORTHO05D017950 2.4e-06 58.2 56 39.3
FAN19G1771 Fragaria x ananassa HOM05D012452 ORTHO05D017950 2.4e-06 58.2 56 39.3
Sabra08G0042700 Salix brachista HOM05D000082 ORTHO05D001639 2.4e-06 58.2 55 38.2
BcaB07g33366 Brassica carinata HOM05D000157 ORTHO05D001065 4.2e-06 57.4 73 31.5
FvH4_1g03372 Fragaria vesca HOM05D012452 ORTHO05D017950 4.2e-06 57.4 56 39.3
FAN23G2234 Fragaria x ananassa HOM05D012452 ORTHO05D017950 4.2e-06 57.4 56 39.3
FAN28G2875 Fragaria x ananassa HOM05D012452 ORTHO05D017950 4.2e-06 57.4 56 39.3
Solyc12g008480.3 Solanum lycopersicum HOM05D000082 ORTHO05D000038 4.2e-06 57.4 61 39.3
Peaxi162Scf00451g00713 Petunia axillaris HOM05D000082 ORTHO05D000038 7.1e-06 56.6 55 38.2
RcHm_v2.0_Chr4g0384981 Rosa chinensis HOM05D000082 ORTHO05D000038 7.1e-06 56.6 58 39.7
Gohir.A13G101400 Gossypium hirsutum HOM05D000082 ORTHO05D000038 9.3e-06 56.2 55 38.2
Gorai.006G016300 Gossypium raimondii HOM05D000082 ORTHO05D000038 9.3e-06 56.2 51 37.3
HanXRQChr08g0220981 Helianthus annuus HOM05D000082 ORTHO05D001639 9.3e-06 56.2 55 34.5
Peaxi162Scf00129g00127 Petunia axillaris HOM05D000082 ORTHO05D000038 9.3e-06 56.2 52 36.5
PGSC0003DMG400000359 Solanum tuberosum HOM05D000634 ORTHO05D000517 9.3e-06 56.2 61 36.1
PGSC0003DMG400034604 Solanum tuberosum HOM05D000082 ORTHO05D000038 9.3e-06 56.2 53 35.8


User provided reference genes

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