Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A01p34690 Brassica napus HOM05D001875 ORTHO05D013246 3.7e-37 157.9 91 100.0
A08p09420 Brassica napus HOM05D001875 ORTHO05D013246 3.7e-37 157.9 91 100.0
BcaC02g10547 Brassica carinata HOM05D001875 ORTHO05D013246 2.3e-31 138.7 74 91.9
BraA08t32941Z Brassica rapa HOM05D001875 ORTHO05D013246 1.0e-26 123.2 59 100.0
BolC4t24306H Brassica oleracea HOM05D001875 ORTHO05D013246 3.9e-23 111.3 59 89.8
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 2.8e-21 105.1 64 79.7
A03p37190 Brassica napus HOM05D001875 ORTHO05D013246 2.4e-20 102.1 59 83.1
A07p09700 Brassica napus HOM05D001875 ORTHO05D013246 2.4e-20 102.1 59 83.1
A10p07880 Brassica napus HOM05D001875 ORTHO05D013246 2.4e-20 102.1 59 83.1
A07p04940 Brassica napus HOM05D001875 ORTHO05D013246 7.2e-17 90.5 60 75.0
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 2.3e-15 85.5 49 81.6
BolC9t55055H Brassica oleracea HOM05D012973 ORTHO05D013246 1.9e-14 82.4 49 79.6
Thhalv10013608m.g Eutrema salsugineum HOM05D001875 ORTHO05D002019 1.1e-12 76.6 48 75.0
Sp6g27000 Schrenkiella parvula HOM05D001875 ORTHO05D002019 1.1e-12 76.6 48 75.0
BcaB01g05215 Brassica carinata HOM05D001875 ORTHO05D002019 3.1e-12 75.1 49 75.5
BraA03t10143Z Brassica rapa HOM05D001875 ORTHO05D002019 5.3e-12 74.3 49 75.5
BcaC01g01843 Brassica carinata HOM05D012973 ORTHO05D013246 6.9e-12 73.9 75 56.0
C03p09530 Brassica napus HOM05D001875 ORTHO05D002019 6.9e-12 73.9 49 75.5
A10p22160 Brassica napus HOM05D001875 ORTHO05D002019 1.5e-11 72.8 49 73.5
BraA10t44275Z Brassica rapa HOM05D001875 ORTHO05D002019 1.5e-11 72.8 49 73.5
CARHR195980 Cardamine hirsuta HOM05D001875 ORTHO05D002019 1.5e-11 72.8 48 68.8
A03p08230 Brassica napus HOM05D001875 ORTHO05D002019 2.0e-11 72.4 49 73.5
BcaB08g36796 Brassica carinata HOM05D001875 ORTHO05D002019 3.4e-11 71.6 50 72.0
C09p59950 Brassica napus HOM05D001875 ORTHO05D002019 4.5e-11 71.2 49 71.4
BolC9t58831H Brassica oleracea HOM05D001875 ORTHO05D002019 4.5e-11 71.2 49 71.4
AL6G28280 Arabidopsis lyrata HOM05D001875 ORTHO05D002019 5.9e-11 70.9 48 68.8
AT5G17230 Arabidopsis thaliana HOM05D001875 ORTHO05D002019 5.9e-11 70.9 48 68.8
BcaNung00411 Brassica carinata HOM05D001875 ORTHO05D002019 5.9e-11 70.9 49 71.4
Carub.0006s1542 Capsella rubella HOM05D001875 ORTHO05D002019 5.9e-11 70.9 48 68.8
BcaC04g18818 Brassica carinata HOM05D001875 ORTHO05D002019 7.7e-11 70.5 49 71.4
BolC3t13448H Brassica oleracea HOM05D001875 ORTHO05D002019 1.0e-10 70.1 49 73.5
BcaB01g04948 Brassica carinata HOM05D001875 ORTHO05D002019 3.2e-09 65.1 49 71.4
BolC3t19429H Brassica oleracea HOM05D012973 ORTHO05D013246 3.2e-09 65.1 37 83.8
Aa31LG11G12440 Aethionema arabicum HOM05D001875 ORTHO05D002019 2.1e-08 62.4 49 59.2
A02p04030 Brassica napus HOM05D001875 ORTHO05D002019 2.7e-08 62.0 42 73.8
BraA02t05366Z Brassica rapa HOM05D001875 ORTHO05D002019 2.7e-08 62.0 42 73.8
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 3.6e-08 61.6 37 75.7
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 3.6e-08 61.6 37 75.7
BcaC03g18541 Brassica carinata HOM05D001875 ORTHO05D002019 6.1e-08 60.8 42 71.4
C02p08870 Brassica napus HOM05D001875 ORTHO05D002019 6.1e-08 60.8 42 71.4
BolC2t06796H Brassica oleracea HOM05D001875 ORTHO05D002019 6.1e-08 60.8 42 71.4
Cpa.g.c43305 Carica papaya HOM05D001875 ORTHO05D013246 2.3e-07 58.9 48 60.4
PSO017G0696 Papaver somniferum HOM05D001875 ORTHO05D002019 3.0e-07 58.5 43 67.4
PSO478G3034 Papaver somniferum HOM05D001875 ORTHO05D002019 3.0e-07 58.5 43 67.4
ClCG01G008470 Citrullus lanatus HOM05D001875 ORTHO05D002019 3.9e-07 58.2 53 56.6
MELO3C025102.2 Cucumis melo HOM05D001875 ORTHO05D002019 3.9e-07 58.2 53 56.6
CsaV3_5G020340 Cucumis sativus L. HOM05D001875 ORTHO05D002019 3.9e-07 58.2 53 56.6
Manes.01G124200 Manihot esculenta HOM05D001875 ORTHO05D002019 3.9e-07 58.2 49 59.2
Oeu012518.1 Olea europaea HOM05D001875 ORTHO05D002019 3.9e-07 58.2 49 59.2
THA.LOC104820868 Tarenaya hassleriana HOM05D001875 ORTHO05D002019 3.9e-07 58.2 52 57.7
GSVIVG01035255001 Vitis vinifera HOM05D001875 ORTHO05D002019 5.1e-07 57.8 53 54.7
Actinidia17158 Actinidia chinensis HOM05D001875 ORTHO05D002019 6.7e-07 57.4 53 56.6
CiPaw.03G076100 Carya illinoinensis HOM05D001875 ORTHO05D002019 6.7e-07 57.4 49 59.2
Duzib138G1522 Durio zibethinus HOM05D001875 ORTHO05D002019 6.7e-07 57.4 48 54.2
QL02p064171 Quercus lobata HOM05D001875 ORTHO05D002019 6.7e-07 57.4 49 57.1
EL10Ac4g08913 Beta vulgaris HOM05D001875 ORTHO05D002019 8.8e-07 57.0 43 62.8
Cfa007751 Carpinus fangiana HOM05D001875 ORTHO05D002019 8.8e-07 57.0 49 59.2
Haze_14321 Corylus avellana HOM05D001875 ORTHO05D002019 8.8e-07 57.0 49 59.2
MSTRG.3670 Avicennia marina HOM05D001875 ORTHO05D002019 1.1e-06 56.6 42 61.9
CAN.G404.3 Capsicum annuum HOM05D001875 ORTHO05D002019 1.1e-06 56.6 53 52.8
FvH4_1g27480 Fragaria vesca HOM05D001875 ORTHO05D002019 1.1e-06 56.6 48 56.2
FAN19G0822 Fragaria x ananassa HOM05D001875 ORTHO05D002019 1.1e-06 56.6 48 56.2
Hma1.2p1_0034F.1_g021440 Hydrangea macrophylla HOM05D001875 ORTHO05D002019 1.1e-06 56.6 49 59.2
Potri.017G138900 Populus trichocarpa HOM05D001875 ORTHO05D002019 1.1e-06 56.6 49 57.1
Prupe.3G013200 Prunus persica HOM05D001875 ORTHO05D002019 1.1e-06 56.6 49 57.1
Thecc.04G058700 Theobroma cacao HOM05D001875 ORTHO05D002019 1.1e-06 56.6 42 69.0
Ah.06g191540 Amaranthus hybridus HOM05D001875 ORTHO05D002019 1.5e-06 56.2 40 65.0
FAN26G2178 Fragaria x ananassa HOM05D001875 ORTHO05D002019 1.5e-06 56.2 38 65.8
Rhsim10G0185700 Rhododendron simsii HOM05D001875 ORTHO05D002019 1.5e-06 56.2 49 57.1
RcHm_v2.0_Chr3g0488531 Rosa chinensis HOM05D001875 ORTHO05D002019 1.5e-06 56.2 48 56.2
SalBow5G1991 Salvia bowleyana HOM05D001875 ORTHO05D002019 1.5e-06 56.2 41 63.4
SalBow5G5378 Salvia bowleyana HOM05D001875 ORTHO05D002019 1.5e-06 56.2 41 63.4
TAR374G0031 Trochodendron aralioides HOM05D001875 ORTHO05D002019 1.5e-06 56.2 49 59.2
TAR374G1524 Trochodendron aralioides HOM05D001875 ORTHO05D002019 1.5e-06 56.2 49 59.2
MSTRG.15633 Avicennia marina HOM05D001875 ORTHO05D002019 2.0e-06 55.8 49 55.1
Ca_05754_v3 Cicer arietinum L. HOM05D001875 ORTHO05D002019 2.0e-06 55.8 49 53.1
Dinv28248 Davidia involucrata HOM05D001875 ORTHO05D002019 2.0e-06 55.8 38 65.8
HanXRQChr12g0365671 Helianthus annuus HOM05D001875 ORTHO05D002019 2.6e-06 55.5 38 63.2
Lsat_1_v5_gn_2_71880 Lactuca sativa HOM05D001875 ORTHO05D002019 2.6e-06 55.5 42 61.9
MD09G1281300 Malus domestica HOM05D001875 ORTHO05D002019 2.6e-06 55.5 49 55.1
Nitab4.5_0003412g0060 Nicotiana tabacum HOM05D001875 ORTHO05D002019 2.6e-06 55.5 53 50.9
Sabra17G0113400 Salix brachista HOM05D001875 ORTHO05D002019 2.6e-06 55.5 49 55.1
Sabra17G0116800 Salix brachista HOM05D001875 ORTHO05D002019 2.6e-06 55.5 49 55.1
Solyc02g081330.4 Solanum lycopersicum HOM05D001875 ORTHO05D002019 2.6e-06 55.5 42 59.5
SGA_v2.0_scaffold115G32043 Striga asiatica HOM05D001875 ORTHO05D013246 2.6e-06 55.5 42 61.9
TWI53G1492 Tripterygium wilfordii HOM05D001875 ORTHO05D002019 2.6e-06 55.5 49 57.1
TWI74G0540 Tripterygium wilfordii HOM05D001875 ORTHO05D002019 2.6e-06 55.5 49 57.1
vmacro20462 Vaccinium macrocarpon HOM05D001875 ORTHO05D002019 2.6e-06 55.5 49 55.1
Lj4C251T7 Lonicera japonica HOM05D001875 ORTHO05D002019 3.3e-06 55.1 38 60.5
Medtr5g076620 Medicago truncatula HOM05D001875 ORTHO05D002019 3.3e-06 55.1 48 58.3
Nitab4.5_0000483g0270 Nicotiana tabacum HOM05D001875 ORTHO05D002019 3.3e-06 55.1 42 59.5
Psat2g044520 Pisum sativum HOM05D001875 ORTHO05D002019 3.3e-06 55.1 48 58.3
Sc09g0004540 Simmondsia chinensis HOM05D001875 ORTHO05D013246 3.3e-06 55.1 39 64.1
PGSC0003DMG400016721 Solanum tuberosum HOM05D001875 ORTHO05D002019 3.3e-06 55.1 42 59.5
TPR.G5319 Trifolium pratense HOM05D001875 ORTHO05D002019 3.3e-06 55.1 48 58.3
CSS0022503 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D002019 4.4e-06 54.7 43 60.5
CAN.G1681.17 Capsicum annuum HOM05D001875 ORTHO05D002019 4.4e-06 54.7 38 63.2
ECA238G3835 Erigeron canadensis HOM05D000188 ORTHO05D000362 4.4e-06 54.7 38 63.2
Lalb_Chr10g0104041 Lupinus albus HOM05D001875 ORTHO05D002019 4.4e-06 54.7 49 53.1
Oeu060822.1 Olea europaea HOM05D001875 ORTHO05D002019 4.4e-06 54.7 53 52.8
Peaxi162Scf00713g00031 Petunia axillaris HOM05D001875 ORTHO05D002019 4.4e-06 54.7 38 63.2
Sed0009094 Sechium edule HOM05D001875 ORTHO05D002019 4.4e-06 54.7 53 54.7
Atru.chr1.2125 Acer truncatum HOM05D001875 ORTHO05D002019 5.7e-06 54.3 43 58.1
CSS0002725 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D002019 5.7e-06 54.3 49 55.1
Ciclev10011841m.g Citrus clementina HOM05D001875 ORTHO05D002019 5.7e-06 54.3 44 56.8
Migut.K00976 Erythranthe guttata HOM05D001875 ORTHO05D002019 5.7e-06 54.3 48 52.1
Lj2C511G6 Lonicera japonica HOM05D001875 ORTHO05D002019 5.7e-06 54.3 38 60.5
Hund06865 Selenicereus undatus HOM05D001875 ORTHO05D002019 5.7e-06 54.3 43 65.1
Sopen02g025960 Solanum pennellii HOM05D001875 ORTHO05D002019 7.4e-06 53.9 42 57.1
SGA_v2.0_scaffold45G17107 Striga asiatica HOM05D001875 ORTHO05D002019 7.4e-06 53.9 42 57.1
Eucgr.F02913 Eucalyptus grandis HOM05D001875 ORTHO05D002019 9.7e-06 53.5 39 66.7
Manes.02G081700 Manihot esculenta HOM05D001875 ORTHO05D002019 9.7e-06 53.5 49 55.1


User provided reference genes

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