Gene: AT5G17230

General Information

Structural Information

  • Species Arabidopsis thaliana
  • Gene Identifier AT5G17230
  • Transcript Identifier AT5G17230.1
  • Gene Type Coding gene
  • Location Chr5 : 5659839-5662087 : negative

Gene Family Information

  • ID HOM05D001875
  • #Genes/#Species 351/99
  • Phylogenetic origin

Gene Duplication Information

Labels

Identifiers

  • tid AT5G17230.1
  • symbol PSY
  • uniprot P37271

Descriptions

  • Description PHYTOENE SYNTHASE
  • Computational description PHYTOENE SYNTHASE (PSY); FUNCTIONS IN: phytoene synthase activity, geranylgeranyl-diphosphate geranylgeranyltransferase activity; INVOLVED IN: carotenoid biosynthetic process; LOCATED IN: chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 13 growth stages; CONTAINS InterPro DOMAIN/s: Squalene/phytoene synthase, conserved site (InterPro:IPR019845), Terpenoid synthase (InterPro:IPR008949), Squalene/phytoene synthase (InterPro:IPR002060); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink).
  • Loading (ortholog descriptions from ath)...

Functional Annotation

Biological Process

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0009058
IEA
GOA Databasebiosynthetic process
GO:0009058
IEA
InterProbiosynthetic process
GO:0016117
IBA
IEA
GOA Databasecarotenoid biosynthetic process
GO:0016117
IDA, IMP
Gene Ontologycarotenoid biosynthetic process1 2
GO:0008299
IEA
GOA Databaseisoprenoid biosynthetic process

Molecular Function

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016767
IBA
IEA
GOA Databasegeranylgeranyl-diphosphate geranylgeranyltransferase activity
GO:0016767
IDA
ISS
TAS
Gene Ontologygeranylgeranyl-diphosphate geranylgeranyltransferase activity1 2 3
GO:0016740
IEA
GOA Databasetransferase activity
GO:0016740
IEA
InterProtransferase activity
GO:0004311
IEA
Gene Ontologyfarnesyltranstransferase activity
GO:0004311
IEA
InterProfarnesyltranstransferase activity
GO:0016765
IEA
GOA Databasetransferase activity, transferring alkyl or aryl (other than methyl) groups
GO:0005515
IPI
Gene Ontologyprotein binding2
GO:0046905
TAS
Gene Ontology15-cis-phytoene synthase activity1

Cellular Component

GO termEvidence(s)Provider(s)DescriptionSource(s)
GO:0016020
IEA
GOA Databasemembrane
GO:0009507
IEA
GOA Databasechloroplast
GO:0009507
IDA, HDA
ISM
Gene Ontologychloroplast2 4
GO:0009536
IEA
GOA Databaseplastid
GO:0031969
IEA
GOA Databasechloroplast membrane
GO:0010287
IDA
Gene Ontologyplastoglobule5

Color Legend

Experimental Evidence
Computational Reviewed Evidence
Electronic Evidence
GO Sources: Primary Orthology Homology
Show redundant parents:
InterPro Description
IPR044843 Trans-isoprenyl diphosphate synthases, bacterial-type
IPR033904 Trans-isoprenyl diphosphate synthases, head-to-head
IPR008949 Isoprenoid synthase domain superfamily
IPR002060 Squalene/phytoene synthase
Mapman id Description
9.1.6.1.1 Secondary metabolism.terpenoids.carotenoid biosynthesis.carotenes.phytoene synthase (PSY)