Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A08p08300 Brassica napus HOM05D002863 ORTHO05D005691 9.0e-136 486.9 239 100.0
BraA10t42687Z Brassica rapa HOM05D002863 ORTHO05D005691 1.1e-120 436.8 227 93.8
A10p04180 Brassica napus HOM05D002863 ORTHO05D005691 4.1e-120 434.9 227 93.4
BcaC05g24383 Brassica carinata HOM05D002863 ORTHO05D005691 1.1e-117 426.8 227 91.2
C05p03810 Brassica napus HOM05D002863 ORTHO05D005691 1.1e-117 426.8 227 91.2
BolC5t29158H Brassica oleracea HOM05D002863 ORTHO05D005691 1.1e-117 426.8 227 91.2
BcaB02g06857 Brassica carinata HOM05D002863 ORTHO05D005691 2.2e-113 412.5 227 87.7
Sp1g04340 Schrenkiella parvula HOM05D002863 ORTHO05D005691 2.2e-102 375.9 231 82.3
AL1G15300 Arabidopsis lyrata HOM05D002863 ORTHO05D005691 9.4e-101 370.5 230 78.3
AT1G05460 Arabidopsis thaliana HOM05D002863 ORTHO05D005691 3.7e-97 358.6 230 77.0
Carub.0001s0479 Capsella rubella HOM05D002863 ORTHO05D005691 4.8e-97 358.2 230 77.0
Thhalv10006684m.g Eutrema salsugineum HOM05D002863 ORTHO05D005691 1.8e-96 356.3 230 76.5
Aa31LG1G19180 Aethionema arabicum HOM05D002863 ORTHO05D005691 5.0e-94 348.2 231 72.3
CARHR004950 Cardamine hirsuta HOM05D002863 ORTHO05D005691 8.5e-94 347.4 227 74.0
THA.LOC104800956 Tarenaya hassleriana HOM05D002863 ORTHO05D005691 3.1e-88 328.9 230 72.2
Thecc.04G235200 Theobroma cacao HOM05D002863 ORTHO05D005691 1.0e-70 270.8 230 59.6
Atru.chr4.2430 Acer truncatum HOM05D002863 ORTHO05D005691 2.3e-70 269.6 231 59.7
Aqoxy5G00438 Aquilegia oxysepala HOM05D002863 ORTHO05D005691 4.4e-66 255.4 230 56.5
Potri.008G155400 Populus trichocarpa HOM05D002863 ORTHO05D005691 7.5e-66 254.6 231 57.1
Ciclev10004283m.g Citrus clementina HOM05D002863 ORTHO05D005691 2.9e-65 252.7 229 58.1
Duzib151G1175 Durio zibethinus HOM05D002863 ORTHO05D005691 3.2e-64 249.2 230 56.5
TWI53G0907 Tripterygium wilfordii HOM05D002863 ORTHO05D005691 9.2e-64 247.7 230 53.0
Manes.03G175900 Manihot esculenta HOM05D002863 ORTHO05D005691 2.0e-63 246.5 230 55.7
COL.COLO4_21516 Corchorus olitorius HOM05D002863 ORTHO05D005691 3.0e-62 242.7 230 56.5
Dinv17741 Davidia involucrata HOM05D002863 ORTHO05D005691 3.0e-62 242.7 231 56.3
GSVIVG01018011001 Vitis vinifera HOM05D002863 ORTHO05D005691 8.6e-62 241.1 230 54.3
Dinv14015 Davidia involucrata HOM05D002863 ORTHO05D005691 1.9e-61 240.0 234 54.3
Prupe.1G017300 Prunus persica HOM05D002863 ORTHO05D005691 3.3e-61 239.2 235 54.0
CsaV3_7G022380 Cucumis sativus L. HOM05D002863 ORTHO05D005691 7.3e-61 238.0 230 53.5
CANSAT78G2191 Cannabis sativa HOM05D002863 ORTHO05D005691 9.5e-61 237.7 232 51.3
Cfa008472 Carpinus fangiana HOM05D002863 ORTHO05D005691 9.5e-61 237.7 233 56.2
TWI12G1273 Tripterygium wilfordii HOM05D002863 ORTHO05D005691 9.5e-61 237.7 232 53.0
Nn1g02374 Nelumbo nucifera HOM05D002863 ORTHO05D005691 1.6e-60 236.9 231 53.7
CiPaw.01G198300 Carya illinoinensis HOM05D002863 ORTHO05D005691 2.1e-60 236.5 231 54.5
MBI05_g12094_MAGBIO Magnolia biondii HOM05D002863 ORTHO05D005691 8.1e-60 234.6 231 51.5
MELO3C012664.2 Cucumis melo HOM05D002863 ORTHO05D005691 1.1e-59 234.2 230 52.2
ClCG06G006340 Citrullus lanatus HOM05D002863 ORTHO05D005691 1.4e-59 233.8 230 53.0
Sed0023639 Sechium edule HOM05D002863 ORTHO05D005691 1.4e-59 233.8 230 52.2
TAR636G1187 Trochodendron aralioides HOM05D002863 ORTHO05D005691 1.4e-59 233.8 231 54.5
PSO210G3945 Papaver somniferum HOM05D002863 ORTHO05D005691 1.8e-59 233.4 230 49.6
PSO832G1692 Papaver somniferum HOM05D002863 ORTHO05D005691 2.3e-59 233.0 230 49.6
RcHm_v2.0_Chr4g0415581 Rosa chinensis HOM05D002863 ORTHO05D005691 4.4e-58 228.8 235 51.1
CSS0024605 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 2.2e-57 226.5 233 51.5
CSS0027055 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 2.2e-57 226.5 233 51.5
Haze_11201 Corylus avellana HOM05D002863 ORTHO05D005691 2.2e-57 226.5 233 53.2
Psat2g190040 Pisum sativum HOM05D002863 ORTHO05D005691 2.2e-57 226.5 231 51.5
Gohir.D11G266600 Gossypium hirsutum HOM05D002863 ORTHO05D005691 2.9e-57 226.1 233 53.2
Gorai.007G286400 Gossypium raimondii HOM05D002863 ORTHO05D005691 1.1e-56 224.2 234 53.0
Glyma.01G235200 Glycine max HOM05D002863 ORTHO05D005691 1.9e-56 223.4 231 50.2
Gohir.A11G256800 Gossypium hirsutum HOM05D002863 ORTHO05D005691 2.4e-56 223.0 233 52.4
HPP92_006123 Vanilla planifolia HOM05D002863 ORTHO05D005691 2.4e-56 223.0 231 49.4
Gohir.A09G217400 Gossypium hirsutum HOM05D002863 ORTHO05D005691 4.1e-56 222.2 229 52.0
Sc13g0004580 Simmondsia chinensis HOM05D002863 ORTHO05D005691 4.1e-56 222.2 230 52.6
MD13G1196500 Malus domestica HOM05D002863 ORTHO05D005691 5.4e-56 221.9 233 50.2
Medtr5g006890 Medicago truncatula HOM05D002863 ORTHO05D005691 1.2e-55 220.7 231 50.6
Medtr2g049990 Medicago truncatula HOM05D002863 ORTHO05D005691 1.6e-55 220.3 231 50.6
Eucgr.H03436 Eucalyptus grandis HOM05D002863 ORTHO05D005691 2.7e-55 219.5 231 51.1
FAN07G0972 Fragaria x ananassa HOM05D002863 ORTHO05D005691 2.7e-55 219.5 235 48.5
FAN17G1329 Fragaria x ananassa HOM05D002863 ORTHO05D005691 2.7e-55 219.5 235 48.5
FvH4_4g15972 Fragaria vesca HOM05D002863 ORTHO05D005691 3.5e-55 219.2 235 48.5
TPR.G38022 Trifolium pratense HOM05D002863 ORTHO05D005691 4.6e-55 218.8 230 50.0
Duzib177G0218 Durio zibethinus HOM05D002863 ORTHO05D005691 6.0e-55 218.4 230 51.3
FAN12G0500 Fragaria x ananassa HOM05D002863 ORTHO05D005691 6.0e-55 218.4 235 48.5
Gohir.D09G219800 Gossypium hirsutum HOM05D002863 ORTHO05D005691 6.0e-55 218.4 229 51.5
Gorai.006G240800 Gossypium raimondii HOM05D002863 ORTHO05D005691 6.0e-55 218.4 229 51.5
Phvul.002G042600 Phaseolus vulgaris HOM05D002863 ORTHO05D005691 1.0e-54 217.6 231 49.4
EL10Ac4g09337 Beta vulgaris HOM05D002863 ORTHO05D005691 1.3e-54 217.2 230 49.1
CSS0031002 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 1.3e-54 217.2 233 48.1
Nitab4.5_0006783g0030 Nicotiana tabacum HOM05D002863 ORTHO05D005691 1.3e-54 217.2 236 50.0
Thecc.05G291200 Theobroma cacao HOM05D002863 ORTHO05D005691 1.3e-54 217.2 231 51.5
Ca_24420_v3 Cicer arietinum L. HOM05D002863 ORTHO05D005691 1.7e-54 216.9 230 51.3
Solyc06g054020.3 Solanum lycopersicum HOM05D002863 ORTHO05D005691 1.7e-54 216.9 234 50.0
CAN.G231.13 Capsicum annuum HOM05D002863 ORTHO05D005691 2.3e-54 216.5 234 49.6
QL06p001686 Quercus lobata HOM05D002863 ORTHO05D005691 2.3e-54 216.5 231 50.2
Sopen06g019190 Solanum pennellii HOM05D002863 ORTHO05D005691 2.3e-54 216.5 234 49.6
Potri.005G047500 Populus trichocarpa HOM05D002863 ORTHO05D005691 3.0e-54 216.1 231 48.1
Peaxi162Scf00131g00027 Petunia axillaris HOM05D002863 ORTHO05D005691 3.9e-54 215.7 234 49.6
PGR004G0456 Punica granatum HOM05D002863 ORTHO05D005691 3.9e-54 215.7 230 50.4
COL.COLO4_13640 Corchorus olitorius HOM05D002863 ORTHO05D005691 6.6e-54 214.9 230 50.9
Hund10646 Selenicereus undatus HOM05D002863 ORTHO05D005691 6.6e-54 214.9 239 48.5
arahy.Tifrunner.gnm1.ann1.IF8NHZ Arachis hypogaea HOM05D002863 ORTHO05D005691 8.6e-54 214.5 234 49.6
arahy.Tifrunner.gnm1.ann1.SX262Z Arachis hypogaea HOM05D002863 ORTHO05D005691 8.6e-54 214.5 234 50.0
Sopen06g019210 Solanum pennellii HOM05D002863 ORTHO05D005691 1.9e-53 213.4 232 49.1
PGSC0003DMG400016310 Solanum tuberosum HOM05D002863 ORTHO05D005691 1.9e-53 213.4 234 49.6
AUR62000846 Chenopodium quinoa HOM05D002863 ORTHO05D005691 2.5e-53 213.0 230 49.1
Nitab4.5_0000321g0190 Nicotiana tabacum HOM05D002863 ORTHO05D005691 2.5e-53 213.0 236 49.6
Solyc06g054050.3 Solanum lycopersicum HOM05D002863 ORTHO05D005691 3.3e-53 212.6 232 49.1
AUR62005129 Chenopodium quinoa HOM05D002863 ORTHO05D005691 1.6e-52 210.3 230 48.3
Cc03_g04040 Coffea canephora HOM05D002863 ORTHO05D005691 2.1e-52 209.9 234 48.3
LjContig00222g0014636 Lotus japonicus HOM05D002863 ORTHO05D005691 8.1e-52 208.0 231 48.9
Cpa.g.sc117.40 Carica papaya HOM05D002863 ORTHO05D005691 2.4e-51 206.5 230 50.0
Rhsim04G0200000 Rhododendron simsii HOM05D002863 ORTHO05D005691 2.4e-51 206.5 235 47.7
CSS0000686 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 3.1e-51 206.1 231 49.8
PGR004G1808 Punica granatum HOM05D002863 ORTHO05D005691 5.2e-51 205.3 235 45.5
VMungo0251G0587 Vigna mungo HOM05D002863 ORTHO05D005691 6.8e-51 204.9 231 50.2
VMungo1215G2311 Vigna mungo HOM05D002863 ORTHO05D005691 6.8e-51 204.9 231 49.4
CSS0007282 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 8.9e-51 204.5 231 49.4
CSS0037612 Camellia sinensis var. sinensis HOM05D002863 ORTHO05D005691 1.5e-50 203.8 231 49.4
Cc02_g31310 Coffea canephora HOM05D002863 ORTHO05D005691 2.0e-50 203.4 234 49.1
Lalb_Chr16g0376481 Lupinus albus HOM05D002863 ORTHO05D005691 2.0e-50 203.4 233 48.1
Oeu018974.1 Olea europaea HOM05D002863 ORTHO05D005691 2.6e-50 203.0 237 48.5
ECA236G4457 Erigeron canadensis HOM05D002863 ORTHO05D005691 3.4e-50 202.6 238 48.3
CDE06G1398 Ceratophyllum demersum HOM05D002863 ORTHO05D005691 7.6e-50 201.4 231 44.2
Os03g0160400 Oryza sativa ssp. japonica HOM05D002863 ORTHO05D005691 2.9e-49 199.5 230 43.5
Lsat_1_v5_gn_9_80360 Lactuca sativa HOM05D002863 ORTHO05D005691 1.4e-48 197.2 239 49.4
Zm00001eb403310 Zea mays HOM05D002863 ORTHO05D005691 5.4e-48 195.3 230 43.5
Zm00001eb004540 Zea mays HOM05D002863 ORTHO05D005691 1.2e-47 194.1 228 43.4
Migut.G00361 Erythranthe guttata HOM05D002863 ORTHO05D005691 4.6e-47 192.2 235 46.0
Nitab4.5_0002361g0230 Nicotiana tabacum HOM05D002863 ORTHO05D005691 1.7e-46 190.3 231 45.5
DCAR_002375 Daucus carota HOM05D002863 ORTHO05D005691 3.0e-46 189.5 231 44.6
PGSC0003DMG400016265 Solanum tuberosum HOM05D002863 ORTHO05D005691 8.7e-46 188.0 245 46.1
SalBow2G0283 Salvia bowleyana HOM05D002863 ORTHO05D005691 1.9e-45 186.8 236 43.6
SGA_v2.0_scaffold191G40493 Striga asiatica HOM05D002863 ORTHO05D005691 4.7e-44 182.2 236 43.6
ATR0665G272 Amborella trichopoda HOM05D002863 ORTHO05D005691 1.8e-43 180.3 228 43.0
CDE07G0808 Ceratophyllum demersum HOM05D002863 ORTHO05D005691 4.0e-43 179.1 217 42.9
Eucgr.H04399 Eucalyptus grandis HOM05D002863 ORTHO05D005691 1.1e-40 171.0 230 43.5
Lj3E732T0 Lonicera japonica HOM05D002863 ORTHO05D005691 1.1e-40 171.0 164 54.3
TAR260G0006 Trochodendron aralioides HOM05D002863 ORTHO05D005691 2.1e-36 156.8 149 54.4
Sed0008697 Sechium edule HOM05D002863 ORTHO05D005691 9.9e-34 147.9 188 43.6
HanXRQChr02g0033141 Helianthus annuus HOM05D002863 ORTHO05D005691 1.1e-29 134.4 158 46.2
Ciclev10000353m.g Citrus clementina HOM05D002863 ORTHO05D005691 5.6e-29 132.1 153 46.4
HanXRQChr04g0095851 Helianthus annuus HOM05D002863 ORTHO05D005691 3.5e-23 112.8 150 44.7
HanXRQChr04g0115181 Helianthus annuus HOM05D002863 ORTHO05D005691 8.2e-20 101.7 150 41.3
SEGI_07136 Sequoiadendron giganteum HOM05D002863 ORTHO05D005691 5.7e-13 79.0 250 26.4
VMungo0251G2242 Vigna mungo HOM05D002863 ORTHO05D005691 4.1e-11 72.8 92 46.7
unitig_899.g14832 Utricularia gibba HOM05D002863 ORTHO05D005691 2.6e-10 70.1 107 37.4
unitig_899.g14831 Utricularia gibba HOM05D002863 ORTHO05D005691 1.1e-08 64.7 86 44.2
Nitab4.5_0002840g0170 Nicotiana tabacum HOM05D002863 ORTHO05D005691 9.4e-08 61.6 57 56.1


User provided reference genes

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