Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p33960 Brassica napus HOM05D003724 ORTHO05D004367 0.0e+00 1198.3 623 100.0
BraA07t31023Z Brassica rapa HOM05D003724 ORTHO05D004367 0.0e+00 1150.6 605 98.7
C06p42900 Brassica napus HOM05D003724 ORTHO05D004367 0.0e+00 1142.1 623 96.0
BolC6t39148H Brassica oleracea HOM05D003724 ORTHO05D004367 0.0e+00 1140.9 623 95.8
BcaC08g46167 Brassica carinata HOM05D003724 ORTHO05D004367 0.0e+00 1122.5 599 97.5
Thhalv10018311m.g Eutrema salsugineum HOM05D003724 ORTHO05D004367 1.3e-279 966.1 601 83.7
Sp5g22320 Schrenkiella parvula HOM05D003724 ORTHO05D004367 3.4e-275 951.4 602 83.4
AL2G25920 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 5.7e-275 950.7 604 83.6
AT1G67370 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 6.1e-269 930.6 604 82.6
CARHR059910 Cardamine hirsuta HOM05D003724 ORTHO05D004367 1.1e-265 919.8 610 80.7
Aa31sc377G30 Aethionema arabicum HOM05D003724 ORTHO05D004367 1.2e-261 906.4 636 76.6
THA.LOC104825509 Tarenaya hassleriana HOM05D003724 ORTHO05D004367 7.1e-249 864.0 610 76.1
Carub.0002s1366 Capsella rubella HOM05D003724 ORTHO05D004367 4.4e-243 844.7 550 81.8
Thecc.02G209200 Theobroma cacao HOM05D003724 ORTHO05D004367 8.7e-215 750.7 616 66.6
Gohir.A03G126400 Gossypium hirsutum HOM05D003724 ORTHO05D004367 3.4e-211 738.8 614 66.1
Gorai.005G167400 Gossypium raimondii HOM05D003724 ORTHO05D004367 1.9e-209 733.0 613 65.6
Atru.chr11.2319 Acer truncatum HOM05D003724 ORTHO05D004367 5.5e-209 731.5 614 65.3
Dinv10959 Davidia involucrata HOM05D003724 ORTHO05D004367 5.5e-209 731.5 605 65.3
Actinidia08073 Actinidia chinensis HOM05D003724 ORTHO05D004367 9.3e-209 730.7 615 64.7
CANSAT01G0850 Cannabis sativa HOM05D003724 ORTHO05D004367 7.9e-208 727.6 614 66.4
Cpa.g.sc43.54 Carica papaya HOM05D003724 ORTHO05D004367 7.9e-208 727.6 624 63.6
TWI75G0323 Tripterygium wilfordii HOM05D003724 ORTHO05D004367 1.8e-207 726.5 616 64.1
Migut.C00176 Erythranthe guttata HOM05D003724 ORTHO05D004367 1.5e-206 723.4 615 64.4
Lj3C1068T3 Lonicera japonica HOM05D003724 ORTHO05D004367 5.3e-204 714.9 617 63.7
PGR102G1478 Punica granatum HOM05D003724 ORTHO05D004367 1.5e-203 713.4 618 63.9
RcHm_v2.0_Chr4g0430341 Rosa chinensis HOM05D003724 ORTHO05D004367 1.3e-202 710.3 626 63.3
Prupe.1G226200 Prunus persica HOM05D003724 ORTHO05D004367 3.8e-202 708.8 624 63.8
RcHm_v2.0_Chr4g0430291 Rosa chinensis HOM05D003724 ORTHO05D004367 3.8e-202 708.8 627 63.6
C06p38720 Brassica napus HOM05D003724 ORTHO05D004367 5.0e-202 708.4 609 66.7
Potri.003G173200 Populus trichocarpa HOM05D003724 ORTHO05D004367 7.2e-201 704.5 619 64.0
FvH4_4g23800 Fragaria vesca HOM05D003724 ORTHO05D004367 3.6e-200 702.2 626 63.3
QL03p052803 Quercus lobata HOM05D003724 ORTHO05D004367 4.6e-200 701.8 629 61.5
MD16G1118900 Malus domestica HOM05D003724 ORTHO05D004367 6.1e-200 701.4 644 62.6
Migut.K00732 Erythranthe guttata HOM05D003724 ORTHO05D004367 2.3e-199 699.5 616 62.5
MD13G1118700 Malus domestica HOM05D003724 ORTHO05D004367 2.3e-199 699.5 627 63.5
Sed0021729 Sechium edule HOM05D003724 ORTHO05D004367 5.1e-199 698.4 610 62.8
Nitab4.5_0003981g0060 Nicotiana tabacum HOM05D003724 ORTHO05D004367 4.3e-198 695.3 620 62.3
FAN22G0779 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-197 693.7 625 63.2
TAR374G1082 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.2e-197 693.0 612 62.9
CiPaw.05G110100 Carya illinoinensis HOM05D003724 ORTHO05D004367 5.3e-196 688.3 619 61.6
Solyc04g007330.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 7.7e-195 684.5 610 62.5
Aqoxy5G02771 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.0e-194 684.1 618 62.1
arahy.Tifrunner.gnm1.ann1.3XH1N1 Arachis hypogaea HOM05D003724 ORTHO05D004367 5.0e-194 681.8 613 61.3
FAN17G0970 Fragaria x ananassa HOM05D003724 ORTHO05D004367 6.5e-194 681.4 654 60.4
ECA233G0767 Erigeron canadensis HOM05D003724 ORTHO05D004367 8.5e-194 681.0 618 61.2
SalBow2G1610 Salvia bowleyana HOM05D003724 ORTHO05D004367 8.5e-194 681.0 611 61.5
Medtr3g085380 Medicago truncatula HOM05D003724 ORTHO05D004367 1.9e-193 679.9 614 60.1
MELO3C010743.2 Cucumis melo HOM05D003724 ORTHO05D004367 2.7e-192 676.0 609 62.1
HanXRQChr08g0207781 Helianthus annuus HOM05D003724 ORTHO05D004367 6.1e-192 674.9 617 61.4
Sopen04g002390 Solanum pennellii HOM05D003724 ORTHO05D004367 7.9e-192 674.5 613 61.7
TPR.G28283 Trifolium pratense HOM05D003724 ORTHO05D004367 1.0e-191 674.1 625 59.4
Aqoxy7G01914 Aquilegia oxysepala HOM05D003724 ORTHO05D004367 1.8e-191 673.3 617 61.3
Oeu036873.1 Olea europaea HOM05D003724 ORTHO05D004367 3.0e-191 672.5 616 61.5
Gohir.D02G149500 Gossypium hirsutum HOM05D003724 ORTHO05D004367 8.8e-191 671.0 618 62.5
Oeu060814.1 Olea europaea HOM05D003724 ORTHO05D004367 2.2e-189 666.4 632 60.3
Psat5g096280 Pisum sativum HOM05D003724 ORTHO05D004367 1.4e-188 663.7 619 59.6
Rhsim12G0026000 Rhododendron simsii HOM05D003724 ORTHO05D004367 2.4e-188 662.9 605 60.3
CsaV3_2G025450 Cucumis sativus L. HOM05D003724 ORTHO05D004367 5.3e-188 661.8 631 59.7
Lj1g0003468 Lotus japonicus HOM05D003724 ORTHO05D004367 5.3e-188 661.8 613 59.2
Hund06087 Selenicereus undatus HOM05D003724 ORTHO05D004367 9.1e-188 661.0 656 57.6
PSO782G1352 Papaver somniferum HOM05D003724 ORTHO05D004367 7.7e-187 657.9 617 59.8
Peaxi162Scf00128g01233 Petunia axillaris HOM05D003724 ORTHO05D004367 1.0e-186 657.5 620 59.2
Actinidia30650 Actinidia chinensis HOM05D003724 ORTHO05D004367 1.3e-186 657.1 617 59.5
Sabra03G0126700 Salix brachista HOM05D003724 ORTHO05D004367 5.0e-186 655.2 615 60.7
Nn3g16465 Nelumbo nucifera HOM05D003724 ORTHO05D004367 8.5e-186 654.4 621 60.2
SGA_v2.0_scaffold9G04687 Striga asiatica HOM05D003724 ORTHO05D004367 3.2e-185 652.5 599 59.6
Ca_16461_v3 Cicer arietinum L. HOM05D003724 ORTHO05D004367 4.2e-185 652.1 614 59.3
Lalb_Chr01g0009271 Lupinus albus HOM05D003724 ORTHO05D004367 1.6e-184 650.2 624 59.1
PSO478G4090 Papaver somniferum HOM05D003724 ORTHO05D004367 1.6e-184 650.2 618 59.7
PSO339G4917 Papaver somniferum HOM05D003724 ORTHO05D004367 3.6e-184 649.0 618 59.9
PSO478G5007 Papaver somniferum HOM05D003724 ORTHO05D004367 8.0e-184 647.9 618 59.5
Lsat_1_v5_gn_8_147680 Lactuca sativa HOM05D003724 ORTHO05D004367 1.1e-182 644.0 608 59.2
PSO384G3745 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-182 644.0 619 59.1
PSO782G3500 Papaver somniferum HOM05D003724 ORTHO05D004367 1.3e-181 640.6 615 59.3
Potri.001G055201 Populus trichocarpa HOM05D003724 ORTHO05D004367 1.3e-181 640.6 643 58.2
Lalb_Chr03g0034531 Lupinus albus HOM05D003724 ORTHO05D004367 1.1e-180 637.5 630 56.5
Glyma.18G006800 Glycine max HOM05D003724 ORTHO05D004367 2.4e-180 636.3 488 65.8
VMungo1383G3407 Vigna mungo HOM05D003724 ORTHO05D004367 9.1e-180 634.4 612 57.2
AUR62021613 Chenopodium quinoa HOM05D003724 ORTHO05D004367 1.2e-179 634.0 620 58.4
BcaB03g15202 Brassica carinata HOM05D003724 ORTHO05D004367 4.5e-179 632.1 333 95.5
Nitab4.5_0002441g0080 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.2e-178 629.8 656 55.6
ATR0561G244 Amborella trichopoda HOM05D003724 ORTHO05D004367 3.8e-178 629.0 630 57.0
Sabra01G0039800 Salix brachista HOM05D003724 ORTHO05D004367 8.5e-178 627.9 637 57.6
HPP92_003196 Vanilla planifolia HOM05D003724 ORTHO05D004367 7.2e-177 624.8 613 57.7
TAR622G1117 Trochodendron aralioides HOM05D003724 ORTHO05D004367 2.1e-176 623.2 628 57.8
AUR62008480 Chenopodium quinoa HOM05D003724 ORTHO05D004367 2.0e-174 616.7 635 56.2
Haze_12416 Corylus avellana HOM05D003724 ORTHO05D004367 2.8e-173 612.8 553 61.3
CDE05G2922 Ceratophyllum demersum HOM05D003724 ORTHO05D004367 1.3e-170 604.0 609 56.0
Os09g0506800 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 1.7e-170 603.6 609 55.7
Sc04g0010100 Simmondsia chinensis HOM05D003724 ORTHO05D004367 1.7e-170 603.6 570 59.6
ClCG08G017130 Citrullus lanatus HOM05D003724 ORTHO05D004367 6.5e-170 601.7 604 57.3
Zm00001eb102420 Zea mays HOM05D003724 ORTHO05D004367 2.3e-167 593.2 615 55.1
arahy.Tifrunner.gnm1.ann1.QLFJ9Y Arachis hypogaea HOM05D003724 ORTHO05D004367 6.8e-167 591.7 616 56.5
CSS0007637 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.2e-166 590.9 626 55.8
EL10Ac6g13492 Beta vulgaris HOM05D003724 ORTHO05D004367 2.6e-166 589.7 621 55.6
PGSC0003DMG400029108 Solanum tuberosum HOM05D003724 ORTHO05D004367 1.3e-165 587.4 562 58.5
Nitab4.5_0003884g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 2.7e-163 579.7 592 56.8
Lj1g0008936 Lotus japonicus HOM05D003724 ORTHO05D004367 1.1e-161 574.3 622 54.3
GSVIVG01010479001 Vitis vinifera HOM05D003724 ORTHO05D004367 1.2e-158 564.3 533 60.4
Ah.01g020690 Amaranthus hybridus HOM05D003724 ORTHO05D004367 2.0e-158 563.5 628 53.3
Cc09_g04930 Coffea canephora HOM05D003724 ORTHO05D004367 1.1e-156 557.8 550 58.9
Nitab4.5_0002699g0070 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.6e-152 542.7 586 54.4
Sed0012468 Sechium edule HOM05D003724 ORTHO05D004367 3.4e-150 536.2 554 54.5
RcHm_v2.0_Chr4g0430321 Rosa chinensis HOM05D003724 ORTHO05D004367 3.0e-146 523.1 526 58.0
Ciclev10033677m.g Citrus clementina HOM05D003724 ORTHO05D004367 1.3e-141 507.7 591 54.0
Manes.12G011600 Manihot esculenta HOM05D003724 ORTHO05D004367 4.6e-139 499.2 339 73.7
vmacro01062 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 1.9e-137 493.8 398 65.1
CAN.G804.4 Capsicum annuum HOM05D003724 ORTHO05D004367 5.2e-135 485.7 340 73.2
MBI06_g20299_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 3.5e-131 473.0 633 47.7
Glyma.11G250400 Glycine max HOM05D003724 ORTHO05D004367 2.8e-128 463.4 516 52.3
BcaB03g15203 Brassica carinata HOM05D003724 ORTHO05D004367 3.6e-128 463.0 260 93.8
PSO339G0549 Papaver somniferum HOM05D003724 ORTHO05D004367 6.2e-128 462.2 610 47.7
CSS0039632 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 2.6e-126 456.8 319 72.1
MBI06_g46773_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 6.0e-123 445.7 434 55.3
AL1G56910 Arabidopsis lyrata HOM05D003724 ORTHO05D004367 9.6e-113 411.8 404 60.4
unitig_8.g3138 Utricularia gibba HOM05D003724 ORTHO05D004367 2.0e-110 404.1 515 48.3
AagrBONN_evm.TU.Sc2ySwM_368.2626 Anthoceros agrestis HOM05D003724 ORTHO05D004367 3.8e-109 399.8 650 40.8
COL.COLO4_20398 Corchorus olitorius HOM05D003724 ORTHO05D004367 1.9e-108 397.5 396 58.8
CARHR058050 Cardamine hirsuta HOM05D003724 ORTHO05D004367 2.7e-107 393.7 276 74.6
FAN24G3534 Fragaria x ananassa HOM05D003724 ORTHO05D004367 7.9e-107 392.1 505 50.3
PSO170G4962 Papaver somniferum HOM05D003724 ORTHO05D004367 9.7e-89 332.0 397 49.4
FAN12G2603 Fragaria x ananassa HOM05D003724 ORTHO05D004367 8.2e-88 328.9 307 59.9
Mapoly0003s0194 Marchantia polymorpha HOM05D003724 ORTHO05D004367 3.8e-85 320.1 513 41.1
CBR_g17956 Chara braunii HOM05D003724 ORTHO05D004367 3.9e-82 310.1 685 36.2
DCAR_026466 Daucus carota HOM05D003724 ORTHO05D004367 1.4e-79 301.6 196 77.0
PSO339G0625 Papaver somniferum HOM05D003724 ORTHO05D004367 1.1e-76 292.0 365 47.7
AT4G32200 Arabidopsis thaliana HOM05D003724 ORTHO05D004367 3.6e-75 287.0 339 53.1
MBI06_g32743_MAGBIO Magnolia biondii HOM05D003724 ORTHO05D004367 1.8e-74 284.6 325 51.1
SHI17968 Sapria himalayana HOM05D003724 ORTHO05D004367 2.6e-70 270.8 228 60.5
SMO116G0148 Selaginella moellendorffii HOM05D003724 ORTHO05D004367 1.0e-69 268.9 224 59.8
Solyc05g015370.3 Solanum lycopersicum HOM05D003724 ORTHO05D004367 3.1e-55 220.7 238 54.2
CAN.G804.3 Capsicum annuum HOM05D003724 ORTHO05D004367 1.0e-53 215.7 271 51.3
Os12g0606600 Oryza sativa ssp. japonica HOM05D003724 ORTHO05D004367 9.5e-52 209.1 299 43.1
PSO782G0388 Papaver somniferum HOM05D003724 ORTHO05D004367 2.3e-50 204.5 253 47.4
Pp3c5_4780 Physcomitrium patens HOM05D003724 ORTHO05D004367 9.8e-49 199.1 733 28.4
FvH4_4g23791 Fragaria vesca HOM05D003724 ORTHO05D004367 1.4e-47 195.3 273 50.2
Sopen05g010640 Solanum pennellii HOM05D003724 ORTHO05D004367 1.1e-44 185.7 106 83.0
SHI17969 Sapria himalayana HOM05D003724 ORTHO05D004367 2.5e-44 184.5 271 44.6
FvH4_2g22740 Fragaria vesca HOM05D003724 ORTHO05D004367 4.7e-43 180.3 266 48.1
PSO832G0175 Papaver somniferum HOM05D003724 ORTHO05D004367 1.0e-42 179.1 128 71.9
FAN12G4010 Fragaria x ananassa HOM05D003724 ORTHO05D004367 3.0e-42 177.6 245 50.2
COL.COLO4_20397 Corchorus olitorius HOM05D003724 ORTHO05D004367 2.2e-40 171.4 149 63.8
Cre10.g452550 Chlamydomonas reinhardtii HOM05D003724 ORTHO05D004367 4.1e-39 167.2 262 41.2
Solyc05g015360.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 1.1e-36 159.1 110 69.1
Phvul.001G261701 Phaseolus vulgaris HOM05D003724 ORTHO05D004367 5.2e-34 150.2 268 39.2
GSVIVG01010478001 Vitis vinifera HOM05D003724 ORTHO05D004367 7.0e-31 139.8 75 92.0
RcHm_v2.0_Chr4g0430331 Rosa chinensis HOM05D003724 ORTHO05D004367 2.7e-30 137.9 75 90.7
Glyma.11G250351 Glycine max HOM05D003724 ORTHO05D004367 4.6e-30 137.1 81 84.0
Hma1.2p1_0200F.1_g085970 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 6.0e-30 136.7 319 32.0
Nitab4.5_0002119g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 1.1e-28 132.5 230 37.4
SHI17966 Sapria himalayana HOM05D003724 ORTHO05D004367 1.9e-28 131.7 126 58.7
Nitab4.5_0000767g0030 Nicotiana tabacum HOM05D003724 ORTHO05D004367 3.6e-27 127.5 202 40.6
FAN07G2055 Fragaria x ananassa HOM05D003724 ORTHO05D004367 4.7e-27 127.1 205 47.8
PSO170G3909 Papaver somniferum HOM05D003724 ORTHO05D004367 7.5e-25 119.8 155 47.1
Hma1.2p1_0053F.1_g030850 Hydrangea macrophylla HOM05D003724 ORTHO05D004367 1.3e-24 119.0 384 28.9
AUR62027241 Chenopodium quinoa HOM05D003724 ORTHO05D009497 1.1e-23 115.9 312 33.7
PRCOL_00002813 Prasinoderma coloniale HOM05D003724 ORTHO05D004367 1.3e-21 109.0 256 30.1
Os01g0165800 Oryza sativa ssp. japonica HOM05D020709 ORTHO05D004367 3.0e-21 107.8 133 43.6
Lsat_1_v5_gn_3_110541 Lactuca sativa HOM05D003724 ORTHO05D004367 2.5e-20 104.8 116 51.7
vmacro18929 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 2.5e-20 104.8 155 40.0
Solyc05g015380.2 Solanum lycopersicum HOM05D003724 ORTHO05D004367 2.1e-19 101.7 151 49.0
TPR.G40282 Trifolium pratense HOM05D003724 ORTHO05D004367 8.1e-19 99.8 120 45.0
PSO063G4593 Papaver somniferum HOM05D003724 ORTHO05D004367 7.6e-17 93.2 77 61.0
FAN12G4031 Fragaria x ananassa HOM05D003724 ORTHO05D004367 1.3e-16 92.4 213 41.3
vmacro01061 Vaccinium macrocarpon HOM05D003724 ORTHO05D004367 3.2e-15 87.8 141 44.0
CSS0010492 Camellia sinensis var. sinensis HOM05D003724 ORTHO05D004367 1.3e-13 82.4 149 45.0
Sopen05g010670 Solanum pennellii HOM05D003724 ORTHO05D004367 5.1e-13 80.5 135 46.7
Lj3g0010411 Lotus japonicus HOM05D003724 ORTHO05D004367 5.6e-12 77.0 119 42.0
DCAR_028604 Daucus carota HOM05D000366 ORTHO05D000437 1.1e-07 62.8 50 60.0
SHI18623 Sapria himalayana HOM05D003724 ORTHO05D004367 1.1e-07 62.8 47 59.6
QL06p013707 Quercus lobata HOM05D003724 ORTHO05D000062 7.1e-07 60.1 38 86.8
QL10p034497 Quercus lobata HOM05D003724 ORTHO05D004367 2.1e-06 58.5 38 84.2


User provided reference genes

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