Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p32470 Brassica napus HOM05D003777 ORTHO05D004690 0.0e+00 1199.5 656 100.0
BcaC08g46176 Brassica carinata HOM05D003777 ORTHO05D004690 0.0e+00 1080.1 661 91.2
C06p42580 Brassica napus HOM05D003777 ORTHO05D004690 0.0e+00 1080.1 661 91.2
BolC6t39181H Brassica oleracea HOM05D003777 ORTHO05D004690 0.0e+00 1080.1 661 91.2
BcaB03g15177 Brassica carinata HOM05D003777 ORTHO05D004690 4.5e-312 1073.9 662 90.5
Sp5g22670 Schrenkiella parvula HOM05D003777 ORTHO05D004690 9.0e-312 1073.2 660 88.8
Thhalv10018246m.g Eutrema salsugineum HOM05D003777 ORTHO05D004690 2.6e-302 1041.6 660 87.9
A07p34190 Brassica napus HOM05D003777 ORTHO05D004690 2.1e-299 1031.9 661 87.9
AT1G67680 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 1.8e-279 965.7 670 81.6
AL2G26380 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 1.4e-276 956.1 658 82.2
Aa31LG4G12090 Aethionema arabicum HOM05D003777 ORTHO05D004690 5.5e-276 954.1 658 81.0
Carub.0002s1406 Capsella rubella HOM05D003777 ORTHO05D004690 2.1e-275 952.2 662 81.0
BcaB03g15368 Brassica carinata HOM05D003777 ORTHO05D004690 2.6e-270 935.3 656 81.6
CARHR060270 Cardamine hirsuta HOM05D003777 ORTHO05D004690 1.2e-267 926.4 660 79.7
THA.LOC104825526 Tarenaya hassleriana HOM05D003777 ORTHO05D004690 1.4e-263 912.9 667 77.4
BraA07t31048Z Brassica rapa HOM05D003777 ORTHO05D004690 3.1e-263 911.8 557 88.7
AT1G67650 Arabidopsis thaliana HOM05D003777 ORTHO05D004690 5.0e-261 904.4 667 76.9
CiPaw.05G173500 Carya illinoinensis HOM05D003777 ORTHO05D004690 1.9e-236 822.8 649 70.4
Potri.006G216400 Populus trichocarpa HOM05D003777 ORTHO05D004690 1.8e-234 816.2 668 69.2
QL03p055332 Quercus lobata HOM05D003777 ORTHO05D004690 4.1e-231 805.1 636 69.7
TWI36G1566 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 1.0e-229 800.4 632 68.7
Cpa.g.sc86.2 Carica papaya HOM05D003777 ORTHO05D004690 3.3e-228 795.4 658 68.5
Sabra06G0166800 Salix brachista HOM05D003777 ORTHO05D004690 3.3e-228 795.4 629 69.0
TWI75G0300 Tripterygium wilfordii HOM05D003777 ORTHO05D004690 3.3e-228 795.4 632 69.1
Nitab4.5_0002026g0090 Nicotiana tabacum HOM05D003777 ORTHO05D004690 6.1e-227 791.2 664 66.6
Thecc.02G272700 Theobroma cacao HOM05D003777 ORTHO05D004690 1.8e-226 789.6 671 65.0
Nitab4.5_0000492g0120 Nicotiana tabacum HOM05D003777 ORTHO05D004690 4.0e-226 788.5 664 66.3
CANSAT01G1767 Cannabis sativa HOM05D003777 ORTHO05D004690 1.2e-225 786.9 635 68.2
TAR374G1267 Trochodendron aralioides HOM05D003777 ORTHO05D004690 2.0e-225 786.2 637 68.1
TAR374G0928 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.3e-224 783.5 637 68.0
CSS0004768 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 2.8e-224 782.3 653 67.4
Phvul.002G176900 Phaseolus vulgaris HOM05D003777 ORTHO05D004690 3.7e-224 781.9 665 65.6
Manes.12G016400 Manihot esculenta HOM05D003777 ORTHO05D004690 1.1e-223 780.4 667 66.0
Solyc11g062270.2 Solanum lycopersicum HOM05D003777 ORTHO05D004690 2.4e-223 779.2 657 67.1
Dinv18168 Davidia involucrata HOM05D003777 ORTHO05D004690 7.0e-223 777.7 680 66.0
Hund25014 Selenicereus undatus HOM05D003777 ORTHO05D004690 7.0e-223 777.7 659 66.2
Sed0005823 Sechium edule HOM05D003777 ORTHO05D004690 1.3e-221 773.5 622 67.0
C06p38540 Brassica napus HOM05D003777 ORTHO05D004690 2.3e-221 772.7 448 92.0
PSO170G4787 Papaver somniferum HOM05D003777 ORTHO05D004690 3.8e-221 771.9 672 65.2
Psat7g080080 Pisum sativum HOM05D003777 ORTHO05D004690 5.0e-221 771.5 644 65.5
Sopen11g024250 Solanum pennellii HOM05D003777 ORTHO05D004690 1.1e-220 770.4 657 66.5
Glyma.05G144700 Glycine max HOM05D003777 ORTHO05D004690 3.3e-220 768.8 631 65.5
Duzib248G0478 Durio zibethinus HOM05D003777 ORTHO05D004690 4.0e-218 761.9 672 64.1
Manes.13G014300 Manihot esculenta HOM05D003777 ORTHO05D004690 5.2e-218 761.5 634 66.9
Carub.0002s1402 Capsella rubella HOM05D003777 ORTHO05D004690 6.8e-218 761.1 539 82.0
Oeu015952.1 Olea europaea HOM05D003777 ORTHO05D004690 6.8e-218 761.1 660 64.7
Medtr8g079990 Medicago truncatula HOM05D003777 ORTHO05D004690 8.9e-218 760.8 638 64.9
SGA_v2.0_scaffold247G44863 Striga asiatica HOM05D003777 ORTHO05D004690 1.5e-217 760.0 691 62.8
Lsat_1_v5_gn_2_96961 Lactuca sativa HOM05D003777 ORTHO05D004690 1.7e-216 756.5 663 65.6
MELO3C011898.2 Cucumis melo HOM05D003777 ORTHO05D004690 3.7e-216 755.4 640 65.2
CsaV3_5G030580 Cucumis sativus L. HOM05D003777 ORTHO05D004690 3.7e-216 755.4 673 63.7
PGR102G0273 Punica granatum HOM05D003777 ORTHO05D004690 6.4e-216 754.6 669 64.3
BolC2t08468H Brassica oleracea HOM05D003777 ORTHO05D004690 1.1e-215 753.8 645 69.9
Gohir.D05G312600 Gossypium hirsutum HOM05D003777 ORTHO05D004690 1.4e-215 753.4 672 62.6
PSO063G1619 Papaver somniferum HOM05D003777 ORTHO05D004690 1.4e-215 753.4 629 66.5
CAN.G487.1 Capsicum annuum HOM05D003777 ORTHO05D004690 1.9e-215 753.1 660 65.6
Gorai.009G334100 Gossypium raimondii HOM05D003777 ORTHO05D004690 9.2e-215 750.7 672 62.6
Gohir.A05G311500 Gossypium hirsutum HOM05D003777 ORTHO05D004690 2.0e-214 749.6 672 62.5
Ca_18071_v3 Cicer arietinum L. HOM05D003777 ORTHO05D004690 4.6e-214 748.4 668 63.2
ECA233G1683 Erigeron canadensis HOM05D003777 ORTHO05D004690 4.6e-214 748.4 669 65.3
DCAR_021624 Daucus carota HOM05D003777 ORTHO05D004690 1.0e-213 747.3 642 65.0
Actinidia08096 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.3e-213 746.9 649 64.4
arahy.Tifrunner.gnm1.ann1.SED4J7 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.3e-213 746.1 704 61.1
GSVIVG01010320001 Vitis vinifera HOM05D003777 ORTHO05D004690 2.3e-213 746.1 630 65.6
Peaxi162Scf00029g02527 Petunia axillaris HOM05D003777 ORTHO05D004690 3.0e-213 745.7 662 64.2
Duzib268G0959 Durio zibethinus HOM05D003777 ORTHO05D004690 3.9e-213 745.3 671 62.0
Atru.chr11.2223 Acer truncatum HOM05D003777 ORTHO05D004690 5.0e-213 745.0 670 63.1
AL2G26340 Arabidopsis lyrata HOM05D003777 ORTHO05D004690 5.0e-213 745.0 662 68.3
MSTRG.12471 Avicennia marina HOM05D003777 ORTHO05D004690 5.0e-213 745.0 621 64.9
vmacro01091 Vaccinium macrocarpon HOM05D003777 ORTHO05D004690 5.0e-213 745.0 684 62.7
Cfa009302 Carpinus fangiana HOM05D003777 ORTHO05D004690 8.6e-213 744.2 674 63.1
Glyma.08G101100 Glycine max HOM05D003777 ORTHO05D004690 1.9e-212 743.0 631 64.2
Lj4g0007172 Lotus japonicus HOM05D003777 ORTHO05D004690 1.9e-212 743.0 666 62.0
arahy.Tifrunner.gnm1.ann1.9WV3XJ Arachis hypogaea HOM05D003777 ORTHO05D004690 7.3e-212 741.1 665 62.4
ClCG05G026250 Citrullus lanatus HOM05D003777 ORTHO05D004690 6.2e-211 738.0 673 62.6
Dinv11003 Davidia involucrata HOM05D003777 ORTHO05D004690 8.9e-210 734.2 670 63.0
MD13G1110100 Malus domestica HOM05D003777 ORTHO05D004690 8.9e-210 734.2 672 63.2
MD16G1110000 Malus domestica HOM05D003777 ORTHO05D004690 1.5e-209 733.4 672 63.5
AUR62017151 Chenopodium quinoa HOM05D003777 ORTHO05D004690 2.0e-209 733.0 662 61.8
arahy.Tifrunner.gnm1.ann1.35MH8V Arachis hypogaea HOM05D003777 ORTHO05D004690 4.4e-209 731.9 657 62.1
Hma1.2p1_0079F.1_g041650 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 7.5e-209 731.1 666 62.9
TPR.G17105 Trifolium pratense HOM05D003777 ORTHO05D004690 1.3e-208 730.3 668 61.5
Ah.10g034950 Amaranthus hybridus HOM05D003777 ORTHO05D004690 2.2e-208 729.6 673 62.0
HanXRQChr04g0126141 Helianthus annuus HOM05D003777 ORTHO05D004690 2.2e-208 729.6 626 65.3
Aqoxy5G03557 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.9e-208 729.2 680 61.6
arahy.Tifrunner.gnm1.ann1.238UV6 Arachis hypogaea HOM05D003777 ORTHO05D004690 2.9e-208 729.2 667 61.8
VMungo0251G0828 Vigna mungo HOM05D003777 ORTHO05D004690 3.7e-208 728.8 708 60.3
DCAR_021625 Daucus carota HOM05D003777 ORTHO05D004690 3.2e-207 725.7 643 63.8
Lalb_Chr07g0187251 Lupinus albus HOM05D003777 ORTHO05D004690 1.9e-204 716.5 664 61.7
AUR62035656 Chenopodium quinoa HOM05D003777 ORTHO05D004690 3.3e-204 715.7 659 60.1
RcHm_v2.0_Chr4g0431581 Rosa chinensis HOM05D003777 ORTHO05D004690 2.1e-203 713.0 665 63.8
FAN07G0030 Fragaria x ananassa HOM05D003777 ORTHO05D004690 2.8e-203 712.6 666 62.6
FvH4_4g24580 Fragaria vesca HOM05D003777 ORTHO05D004690 3.6e-203 712.2 662 62.5
FAN12G3799 Fragaria x ananassa HOM05D003777 ORTHO05D004690 6.2e-203 711.4 662 62.5
RcHm_v2.0_Chr4g0431561 Rosa chinensis HOM05D003777 ORTHO05D004690 5.2e-202 708.4 661 63.1
Migut.D00587 Erythranthe guttata HOM05D003777 ORTHO05D004690 8.9e-202 707.6 603 65.3
Eucgr.B03455 Eucalyptus grandis HOM05D003777 ORTHO05D004690 2.0e-201 706.4 672 60.6
EL10Ac9g22111 Beta vulgaris HOM05D003777 ORTHO05D004690 9.9e-201 704.1 677 60.3
FAN17G2971 Fragaria x ananassa HOM05D003777 ORTHO05D004690 1.4e-199 700.3 645 62.5
FAN22G1648 Fragaria x ananassa HOM05D003777 ORTHO05D004690 4.1e-199 698.7 666 62.2
Rhsim12G0035800 Rhododendron simsii HOM05D003777 ORTHO05D004690 1.3e-197 693.7 748 55.3
Prupe.1G234800 Prunus persica HOM05D003777 ORTHO05D004690 7.3e-196 688.0 574 68.5
BolC6t38947H Brassica oleracea HOM05D003777 ORTHO05D004690 1.8e-194 683.3 406 90.6
TPR.G27143 Trifolium pratense HOM05D003777 ORTHO05D004690 8.9e-194 681.0 536 65.3
COL.COLO4_23602 Corchorus olitorius HOM05D003777 ORTHO05D004690 2.6e-193 679.5 633 59.9
Nitab4.5_0002757g0020 Nicotiana tabacum HOM05D003777 ORTHO05D004690 1.6e-190 670.2 637 61.2
Ciclev10030955m.g Citrus clementina HOM05D003777 ORTHO05D004690 7.8e-190 667.9 634 61.2
CSS0018349 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.1e-188 664.1 512 68.4
unitig_744.g24046 Utricularia gibba HOM05D003777 ORTHO05D004690 2.1e-187 659.8 680 58.5
MBI11_g31858_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 6.2e-187 658.3 684 58.6
ATR0824G106 Amborella trichopoda HOM05D003777 ORTHO05D004690 6.4e-184 648.3 669 56.7
Actinidia30683 Actinidia chinensis HOM05D003777 ORTHO05D004690 1.4e-183 647.1 658 59.1
HPP92_012793 Vanilla planifolia HOM05D003777 ORTHO05D004690 6.0e-182 641.7 673 56.5
CDE07G0923 Ceratophyllum demersum HOM05D003777 ORTHO05D004690 2.3e-181 639.8 670 56.6
Os01g0889000 Oryza sativa ssp. japonica HOM05D003777 ORTHO05D004690 8.1e-179 631.3 671 54.5
Sed0021346 Sechium edule HOM05D003777 ORTHO05D004690 3.7e-171 605.9 554 62.6
PGSC0003DMG400032494 Solanum tuberosum HOM05D003777 ORTHO05D004690 3.3e-164 582.8 484 64.9
Nitab4.5_0001925g0190 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.1e-163 580.1 625 55.5
Sc04g0009890 Simmondsia chinensis HOM05D003777 ORTHO05D004690 2.1e-163 580.1 514 65.0
C02p23330 Brassica napus HOM05D003777 ORTHO05D004690 9.7e-156 554.7 644 56.4
Lj2C633G4 Lonicera japonica HOM05D003777 ORTHO05D004690 4.1e-154 549.3 511 59.9
Mapoly0007s0138 Marchantia polymorpha HOM05D003777 ORTHO05D004690 3.0e-141 506.5 632 46.2
Lalb_Chr12g0206451 Lupinus albus HOM05D003777 ORTHO05D004690 3.1e-138 496.5 459 63.4
SEGI_14731 Sequoiadendron giganteum HOM05D003777 ORTHO05D004690 1.9e-135 487.3 554 52.2
Zm00001eb145240 Zea mays HOM05D003777 ORTHO05D004690 1.9e-135 487.3 489 58.7
Lalb_Chr12g0206431 Lupinus albus HOM05D003777 ORTHO05D004690 3.2e-135 486.5 451 63.4
SHI17928 Sapria himalayana HOM05D003777 ORTHO05D004690 1.6e-134 484.2 669 47.8
Pp3c19_7700 Physcomitrium patens HOM05D003777 ORTHO05D004690 3.3e-132 476.5 678 43.5
CSS0034811 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 7.0e-130 468.8 446 63.0
SMO356G0370 Selaginella moellendorffii HOM05D003777 ORTHO05D004690 4.0e-109 399.8 629 42.6
Lalb_Chr12g0206401 Lupinus albus HOM05D003777 ORTHO05D004690 4.4e-108 396.4 332 63.6
CBR_g26341 Chara braunii HOM05D003777 ORTHO05D004690 3.2e-106 390.2 639 41.2
BraA07t30871Z Brassica rapa HOM05D003777 ORTHO05D004690 4.1e-106 389.8 206 96.6
TAR622G1358 Trochodendron aralioides HOM05D003777 ORTHO05D004690 1.9e-98 364.4 338 65.7
AUR62017138 Chenopodium quinoa HOM05D003777 ORTHO05D004690 9.2e-82 308.9 347 55.0
MCO13G157 Micromonas commoda HOM05D003777 ORTHO05D004690 6.2e-70 269.6 683 35.1
Oeu007469.1 Olea europaea HOM05D003777 ORTHO05D004690 1.1e-66 258.8 325 51.7
CSS0039153 Camellia sinensis var. sinensis HOM05D003777 ORTHO05D004690 1.3e-62 245.4 196 63.8
ECA238G3243 Erigeron canadensis HOM05D003777 ORTHO05D004690 4.0e-61 240.4 224 59.8
PGSC0003DMG400024128 Solanum tuberosum HOM05D003777 ORTHO05D004690 7.1e-58 229.6 188 64.4
Hma1.2p1_0075F.1_g039220 Hydrangea macrophylla HOM05D003777 ORTHO05D004690 4.5e-52 210.3 240 54.2
TAR622G0547 Trochodendron aralioides HOM05D003777 ORTHO05D004690 4.5e-52 210.3 168 62.5
PGSC0003DMG400017991 Solanum tuberosum HOM05D003777 ORTHO05D004690 1.7e-51 208.4 172 65.7
Cre03.g182500 Chlamydomonas reinhardtii HOM05D003777 ORTHO05D004690 2.2e-51 208.0 751 29.2
Nn4g21997 Nelumbo nucifera HOM05D003777 ORTHO05D004690 1.9e-50 204.9 172 69.8
PRCOL_00006597 Prasinoderma coloniale HOM05D003777 ORTHO05D004690 1.9e-47 194.9 681 29.4
PGSC0003DMG400024126 Solanum tuberosum HOM05D003777 ORTHO05D004690 4.3e-47 193.7 168 70.8
Solyc10g044443.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 9.0e-45 186.0 176 57.4
C06p38550 Brassica napus HOM05D003777 ORTHO05D004690 7.6e-44 183.0 118 97.5
Sopen01g018830 Solanum pennellii HOM05D003777 ORTHO05D004690 2.5e-42 177.9 176 55.1
Psat3g102200 Pisum sativum HOM05D003777 ORTHO05D004690 1.6e-41 175.3 154 57.1
Psat5g044680 Pisum sativum HOM05D003777 ORTHO05D004690 1.3e-40 172.2 154 57.1
Aqoxy6G02118 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 4.5e-36 157.1 126 62.7
Sopen01g018820 Solanum pennellii HOM05D003777 ORTHO05D004690 5.0e-35 153.7 173 52.0
Haze_17766 Corylus avellana HOM05D001576 ORTHO05D000401 5.5e-34 150.2 117 63.2
Aqoxy6G02120 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.0e-31 141.7 136 62.5
CAN.G1295.1 Capsicum annuum HOM05D003777 ORTHO05D004690 2.2e-30 138.3 148 54.1
Lalb_Chr12g0206421 Lupinus albus HOM05D003777 ORTHO05D004690 6.3e-30 136.7 108 62.0
Psat3g103880 Pisum sativum HOM05D003777 ORTHO05D004690 2.1e-25 121.7 189 39.7
BcaC03g14865 Brassica carinata HOM05D003777 ORTHO05D004690 3.6e-25 120.9 110 66.4
Lalb_Chr12g0206411 Lupinus albus HOM05D003777 ORTHO05D004690 2.3e-24 118.2 91 64.8
Lalb_Chr12g0206441 Lupinus albus HOM05D003777 ORTHO05D004690 2.3e-24 118.2 91 64.8
Lalb_Chr12g0206461 Lupinus albus HOM05D003777 ORTHO05D004690 2.3e-24 118.2 91 64.8
CAN.G1310.4 Capsicum annuum HOM05D003777 ORTHO05D004690 8.8e-24 116.3 90 64.4
TAR636G3069 Trochodendron aralioides HOM05D003847 ORTHO05D004976 5.7e-23 113.6 94 63.8
Aqoxy6G02119 Aquilegia oxysepala HOM05D003777 ORTHO05D004690 2.4e-21 108.2 94 63.8
BcaC03g14858 Brassica carinata HOM05D003777 ORTHO05D004690 4.1e-21 107.5 91 71.4
MBI11_g11081_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 2.0e-20 105.1 97 57.7
MBI11_g45427_MAGBIO Magnolia biondii HOM05D003777 ORTHO05D004690 1.3e-19 102.4 94 58.5
SHI17930 Sapria himalayana HOM05D003777 ORTHO05D012379 1.1e-15 89.4 93 53.8
TAR622G0255 Trochodendron aralioides HOM05D003777 ORTHO05D004690 9.7e-15 86.3 87 54.0
PGSC0003DMG400024133 Solanum tuberosum HOM05D003777 ORTHO05D004690 8.2e-14 83.2 58 70.7
Psat4g130680 Pisum sativum HOM05D003777 ORTHO05D037365 2.0e-12 78.6 83 48.2
Nitab4.5_0004629g0100 Nicotiana tabacum HOM05D003777 ORTHO05D004690 2.9e-11 74.7 50 72.0
SEGI_18986 Sequoiadendron giganteum HOM05D003777 ORTHO05D000001 1.5e-10 72.4 82 47.6
Solyc01g047580.1 Solanum lycopersicum HOM05D003777 ORTHO05D004690 1.5e-10 72.4 148 42.6
Cfa022335 Carpinus fangiana HOM05D003777 ORTHO05D004690 5.7e-07 60.5 633 23.1


User provided reference genes

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