Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A03p37190 Brassica napus HOM05D001875 ORTHO05D013246 8.6e-27 122.9 60 100.0
A07p09700 Brassica napus HOM05D001875 ORTHO05D013246 8.6e-27 122.9 60 100.0
A10p07880 Brassica napus HOM05D001875 ORTHO05D013246 8.6e-27 122.9 60 100.0
BcaC02g10547 Brassica carinata HOM05D001875 ORTHO05D013246 3.2e-21 104.4 59 84.7
A07p04940 Brassica napus HOM05D001875 ORTHO05D013246 3.2e-21 104.4 61 85.2
BolC4t24306H Brassica oleracea HOM05D001875 ORTHO05D013246 3.2e-21 104.4 59 84.7
A01p34690 Brassica napus HOM05D001875 ORTHO05D013246 7.0e-21 103.2 59 83.1
A08p09420 Brassica napus HOM05D001875 ORTHO05D013246 7.0e-21 103.2 59 83.1
BraA08t32941Z Brassica rapa HOM05D001875 ORTHO05D013246 7.0e-21 103.2 59 83.1
C03p38700 Brassica napus HOM05D012973 ORTHO05D016770 8.9e-16 86.3 47 89.4
BcaC05g27999 Brassica carinata HOM05D012973 ORTHO05D016770 7.5e-15 83.2 46 82.6
BolC9t55055H Brassica oleracea HOM05D012973 ORTHO05D013246 6.4e-14 80.1 47 83.0
Thhalv10013608m.g Eutrema salsugineum HOM05D001875 ORTHO05D002019 1.4e-13 79.0 48 79.2
Sp6g27000 Schrenkiella parvula HOM05D001875 ORTHO05D002019 1.4e-13 79.0 48 79.2
BcaB01g05215 Brassica carinata HOM05D001875 ORTHO05D002019 4.1e-13 77.4 49 77.6
BraA03t10143Z Brassica rapa HOM05D001875 ORTHO05D002019 5.4e-13 77.0 49 79.6
C03p09530 Brassica napus HOM05D001875 ORTHO05D002019 7.1e-13 76.6 49 79.6
A03p08230 Brassica napus HOM05D001875 ORTHO05D002019 2.1e-12 75.1 49 77.6
A10p22160 Brassica napus HOM05D001875 ORTHO05D002019 2.1e-12 75.1 49 77.6
BraA10t44275Z Brassica rapa HOM05D001875 ORTHO05D002019 2.1e-12 75.1 49 77.6
CARHR195980 Cardamine hirsuta HOM05D001875 ORTHO05D002019 2.1e-12 75.1 48 72.9
BcaB08g36796 Brassica carinata HOM05D001875 ORTHO05D002019 4.6e-12 73.9 50 76.0
C09p59950 Brassica napus HOM05D001875 ORTHO05D002019 6.0e-12 73.6 49 75.5
BolC9t58831H Brassica oleracea HOM05D001875 ORTHO05D002019 6.0e-12 73.6 49 75.5
AL6G28280 Arabidopsis lyrata HOM05D001875 ORTHO05D002019 7.8e-12 73.2 48 72.9
AT5G17230 Arabidopsis thaliana HOM05D001875 ORTHO05D002019 7.8e-12 73.2 48 72.9
BcaC04g18818 Brassica carinata HOM05D001875 ORTHO05D002019 7.8e-12 73.2 49 75.5
BcaNung00411 Brassica carinata HOM05D001875 ORTHO05D002019 7.8e-12 73.2 49 75.5
Carub.0006s1542 Capsella rubella HOM05D001875 ORTHO05D002019 7.8e-12 73.2 48 72.9
BolC3t13448H Brassica oleracea HOM05D001875 ORTHO05D002019 1.3e-11 72.4 49 75.5
BcaC01g01843 Brassica carinata HOM05D012973 ORTHO05D013246 2.3e-11 71.6 76 57.9
BcaB01g04948 Brassica carinata HOM05D001875 ORTHO05D002019 3.3e-10 67.8 49 75.5
BolC3t19429H Brassica oleracea HOM05D012973 ORTHO05D013246 3.3e-10 67.8 37 89.2
Aa31LG11G12440 Aethionema arabicum HOM05D001875 ORTHO05D002019 2.8e-09 64.7 49 63.3
A02p04030 Brassica napus HOM05D001875 ORTHO05D002019 8.1e-09 63.2 42 78.6
BraA02t05366Z Brassica rapa HOM05D001875 ORTHO05D002019 8.1e-09 63.2 42 78.6
BcaC03g18541 Brassica carinata HOM05D001875 ORTHO05D002019 1.8e-08 62.0 42 76.2
C02p08870 Brassica napus HOM05D001875 ORTHO05D002019 1.8e-08 62.0 42 76.2
BolC2t06796H Brassica oleracea HOM05D001875 ORTHO05D002019 1.8e-08 62.0 42 76.2
Cpa.g.c43305 Carica papaya HOM05D001875 ORTHO05D013246 1.8e-08 62.0 48 64.6
FvH4_1g27480 Fragaria vesca HOM05D001875 ORTHO05D002019 6.8e-08 60.1 48 62.5
FAN19G0822 Fragaria x ananassa HOM05D001875 ORTHO05D002019 6.8e-08 60.1 48 62.5
FAN26G2178 Fragaria x ananassa HOM05D001875 ORTHO05D002019 8.9e-08 59.7 48 62.5
Manes.01G124200 Manihot esculenta HOM05D001875 ORTHO05D002019 8.9e-08 59.7 49 63.3
PSO017G0696 Papaver somniferum HOM05D001875 ORTHO05D002019 8.9e-08 59.7 49 63.3
PSO478G3034 Papaver somniferum HOM05D001875 ORTHO05D002019 8.9e-08 59.7 49 63.3
RcHm_v2.0_Chr3g0488531 Rosa chinensis HOM05D001875 ORTHO05D002019 8.9e-08 59.7 48 62.5
ClCG01G008470 Citrullus lanatus HOM05D001875 ORTHO05D002019 1.2e-07 59.3 43 72.1
MELO3C025102.2 Cucumis melo HOM05D001875 ORTHO05D002019 1.2e-07 59.3 43 72.1
CsaV3_5G020340 Cucumis sativus L. HOM05D001875 ORTHO05D002019 1.2e-07 59.3 43 72.1
Duzib138G1522 Durio zibethinus HOM05D001875 ORTHO05D002019 1.2e-07 59.3 48 58.3
Oeu012518.1 Olea europaea HOM05D001875 ORTHO05D002019 1.5e-07 58.9 43 72.1
THA.LOC104820868 Tarenaya hassleriana HOM05D001875 ORTHO05D002019 2.0e-07 58.5 48 64.6
Thecc.04G058700 Theobroma cacao HOM05D001875 ORTHO05D002019 2.0e-07 58.5 42 73.8
Hma1.2p1_0034F.1_g021440 Hydrangea macrophylla HOM05D001875 ORTHO05D002019 3.4e-07 57.8 39 76.9
Sc09g0004540 Simmondsia chinensis HOM05D001875 ORTHO05D013246 3.4e-07 57.8 45 64.4
CiPaw.03G076100 Carya illinoinensis HOM05D001875 ORTHO05D002019 4.4e-07 57.4 49 61.2
HanXRQChr12g0365671 Helianthus annuus HOM05D001875 ORTHO05D002019 4.4e-07 57.4 40 67.5
Potri.017G138900 Populus trichocarpa HOM05D001875 ORTHO05D002019 4.4e-07 57.4 39 74.4
QL02p064171 Quercus lobata HOM05D001875 ORTHO05D002019 4.4e-07 57.4 49 59.2
SalBow5G1991 Salvia bowleyana HOM05D001875 ORTHO05D002019 4.4e-07 57.4 41 68.3
SalBow5G5378 Salvia bowleyana HOM05D001875 ORTHO05D002019 4.4e-07 57.4 41 68.3
GSVIVG01035255001 Vitis vinifera HOM05D001875 ORTHO05D002019 4.4e-07 57.4 49 59.2
Atru.chr1.2125 Acer truncatum HOM05D001875 ORTHO05D002019 5.8e-07 57.0 49 57.1
MSTRG.15633 Avicennia marina HOM05D001875 ORTHO05D002019 5.8e-07 57.0 38 71.1
MSTRG.3670 Avicennia marina HOM05D001875 ORTHO05D002019 5.8e-07 57.0 38 71.1
EL10Ac4g08913 Beta vulgaris HOM05D001875 ORTHO05D002019 5.8e-07 57.0 39 71.8
C05p40080 Brassica napus HOM05D012973 ORTHO05D016770 5.8e-07 57.0 34 76.5
BolC5t32753H Brassica oleracea HOM05D012973 ORTHO05D016770 5.8e-07 57.0 34 76.5
CAN.G404.3 Capsicum annuum HOM05D001875 ORTHO05D002019 5.8e-07 57.0 43 67.4
Cfa007751 Carpinus fangiana HOM05D001875 ORTHO05D002019 5.8e-07 57.0 49 61.2
Ca_05754_v3 Cicer arietinum L. HOM05D001875 ORTHO05D002019 5.8e-07 57.0 49 57.1
Haze_14321 Corylus avellana HOM05D001875 ORTHO05D002019 5.8e-07 57.0 49 61.2
Dinv28248 Davidia involucrata HOM05D001875 ORTHO05D002019 5.8e-07 57.0 38 71.1
Lsat_1_v5_gn_2_71880 Lactuca sativa HOM05D001875 ORTHO05D002019 5.8e-07 57.0 38 71.1
Prupe.3G013200 Prunus persica HOM05D001875 ORTHO05D002019 5.8e-07 57.0 49 59.2
SGA_v2.0_scaffold115G32043 Striga asiatica HOM05D001875 ORTHO05D013246 5.8e-07 57.0 40 67.5
Actinidia17158 Actinidia chinensis HOM05D001875 ORTHO05D002019 7.6e-07 56.6 43 69.8
Solyc02g081330.4 Solanum lycopersicum HOM05D001875 ORTHO05D002019 7.6e-07 56.6 38 68.4
TAR374G0031 Trochodendron aralioides HOM05D001875 ORTHO05D002019 7.6e-07 56.6 43 69.8
TAR374G1524 Trochodendron aralioides HOM05D001875 ORTHO05D002019 7.6e-07 56.6 43 69.8
Ah.04g162950 Amaranthus hybridus HOM05D001875 ORTHO05D002019 9.9e-07 56.2 39 69.2
Lj4C251T7 Lonicera japonica HOM05D001875 ORTHO05D002019 9.9e-07 56.2 38 65.8
Rhsim10G0185700 Rhododendron simsii HOM05D001875 ORTHO05D002019 9.9e-07 56.2 38 76.3
Sabra17G0113400 Salix brachista HOM05D001875 ORTHO05D002019 9.9e-07 56.2 39 71.8
Sabra17G0116800 Salix brachista HOM05D001875 ORTHO05D002019 9.9e-07 56.2 39 71.8
PGSC0003DMG400016721 Solanum tuberosum HOM05D001875 ORTHO05D002019 9.9e-07 56.2 38 68.4
CSS0022503 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D002019 1.3e-06 55.8 43 65.1
CAN.G1681.17 Capsicum annuum HOM05D001875 ORTHO05D002019 1.3e-06 55.8 38 68.4
ECA238G3835 Erigeron canadensis HOM05D000188 ORTHO05D000362 1.3e-06 55.8 38 68.4
Eucgr.F02913 Eucalyptus grandis HOM05D001875 ORTHO05D002019 1.3e-06 55.8 49 59.2
MD09G1281300 Malus domestica HOM05D001875 ORTHO05D002019 1.3e-06 55.8 39 71.8
Peaxi162Scf00713g00031 Petunia axillaris HOM05D001875 ORTHO05D002019 1.3e-06 55.8 38 68.4
Potri.004G081433 Populus trichocarpa HOM05D001875 ORTHO05D013246 1.3e-06 55.8 48 56.2
Sed0009094 Sechium edule HOM05D001875 ORTHO05D002019 1.3e-06 55.8 43 69.8
SGA_v2.0_scaffold45G17107 Striga asiatica HOM05D001875 ORTHO05D002019 1.3e-06 55.8 40 65.0
TWI53G1492 Tripterygium wilfordii HOM05D001875 ORTHO05D002019 1.3e-06 55.8 39 74.4
TWI74G0540 Tripterygium wilfordii HOM05D001875 ORTHO05D002019 1.3e-06 55.8 39 74.4
Lj2C511G6 Lonicera japonica HOM05D001875 ORTHO05D002019 1.7e-06 55.5 38 65.8
Lalb_Chr10g0104041 Lupinus albus HOM05D001875 ORTHO05D002019 1.7e-06 55.5 43 65.1
Medtr5g076620 Medicago truncatula HOM05D001875 ORTHO05D002019 1.7e-06 55.5 49 55.1
Nitab4.5_0000483g0270 Nicotiana tabacum HOM05D001875 ORTHO05D002019 1.7e-06 55.5 38 68.4
Oeu060822.1 Olea europaea HOM05D001875 ORTHO05D002019 1.7e-06 55.5 43 67.4
Psat2g044520 Pisum sativum HOM05D001875 ORTHO05D002019 1.7e-06 55.5 49 55.1
TPR.G5319 Trifolium pratense HOM05D001875 ORTHO05D002019 1.7e-06 55.5 49 55.1
Migut.K00976 Erythranthe guttata HOM05D001875 ORTHO05D002019 2.2e-06 55.1 38 65.8
Nitab4.5_0003412g0060 Nicotiana tabacum HOM05D001875 ORTHO05D002019 2.2e-06 55.1 43 65.1
Hund06865 Selenicereus undatus HOM05D001875 ORTHO05D002019 2.2e-06 55.1 39 74.4
Sopen02g025960 Solanum pennellii HOM05D001875 ORTHO05D002019 2.2e-06 55.1 38 65.8
vmacro20462 Vaccinium macrocarpon HOM05D001875 ORTHO05D002019 2.2e-06 55.1 38 73.7
Ciclev10011841m.g Citrus clementina HOM05D001875 ORTHO05D002019 2.9e-06 54.7 38 68.4
Gohir.D07G079100 Gossypium hirsutum HOM05D001875 ORTHO05D002019 2.9e-06 54.7 41 63.4
Lalb_Chr04g0251521 Lupinus albus HOM05D001875 ORTHO05D002019 2.9e-06 54.7 38 65.8
Ah.06g191540 Amaranthus hybridus HOM05D001875 ORTHO05D002019 3.7e-06 54.3 38 71.1
Glyma.02G240200 Glycine max HOM05D001875 ORTHO05D002019 3.7e-06 54.3 40 67.5
Glyma.14G209700 Glycine max HOM05D001875 ORTHO05D002019 3.7e-06 54.3 40 67.5
HanXRQChr12g0384141 Helianthus annuus HOM05D001875 ORTHO05D002019 3.7e-06 54.3 38 68.4
Lsat_1_v5_gn_3_67861 Lactuca sativa HOM05D001875 ORTHO05D002019 3.7e-06 54.3 38 65.8
VMungo0647G0974 Vigna mungo HOM05D001875 ORTHO05D002019 3.7e-06 54.3 40 62.5
arahy.Tifrunner.gnm1.ann1.W3GBX7 Arachis hypogaea HOM05D001875 ORTHO05D002019 4.9e-06 53.9 49 53.1
CSS0002725 Camellia sinensis var. sinensis HOM05D001875 ORTHO05D002019 4.9e-06 53.9 38 73.7
Gohir.A07G074400 Gossypium hirsutum HOM05D001875 ORTHO05D002019 4.9e-06 53.9 32 75.0
Gorai.001G083700 Gossypium raimondii HOM05D001875 ORTHO05D002019 4.9e-06 53.9 32 75.0
MBI08_g26870_MAGBIO Magnolia biondii HOM05D001875 ORTHO05D002019 4.9e-06 53.9 39 69.2
Manes.02G081700 Manihot esculenta HOM05D001875 ORTHO05D002019 4.9e-06 53.9 49 57.1
Nitab4.5_0000091g0360 Nicotiana tabacum HOM05D001875 ORTHO05D002019 4.9e-06 53.9 38 65.8
Nitab4.5_0006449g0010 Nicotiana tabacum HOM05D001875 ORTHO05D002019 4.9e-06 53.9 38 65.8
Peaxi162Scf00521g00036 Petunia axillaris HOM05D001875 ORTHO05D002019 4.9e-06 53.9 38 63.2
DCAR_010057 Daucus carota HOM05D001875 ORTHO05D002019 6.4e-06 53.5 40 65.0
Phvul.008G241500 Phaseolus vulgaris HOM05D001875 ORTHO05D002019 6.4e-06 53.5 40 62.5
LjContig00141g0021540 Lotus japonicus HOM05D001875 ORTHO05D002019 8.4e-06 53.1 33 69.7


User provided reference genes

Program Settings