Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p08510 Brassica napus HOM05D005307 ORTHO05D006695 0.0e+00 1125.5 872 100.0
BraA07t28636Z Brassica rapa HOM05D005307 ORTHO05D006695 0.0e+00 1121.7 872 99.2
C07p13250 Brassica napus HOM05D005307 ORTHO05D006695 6.3e-288 994.2 875 90.1
BcaC06g35584 Brassica carinata HOM05D005307 ORTHO05D006695 8.3e-288 993.8 875 89.0
BolC7t41817H Brassica oleracea HOM05D005307 ORTHO05D006695 3.5e-286 988.4 793 92.4
BcaB06g26551 Brassica carinata HOM05D005307 ORTHO05D006695 7.8e-262 907.5 889 78.9
Sp3g21580 Schrenkiella parvula HOM05D005307 ORTHO05D006695 1.6e-243 846.7 876 71.5
Thhalv10002398m.g Eutrema salsugineum HOM05D005307 ORTHO05D006695 1.1e-239 833.9 578 81.1
Carub.0003s2420 Capsella rubella HOM05D005307 ORTHO05D006695 1.7e-232 810.1 631 79.6
AT3G23900 Arabidopsis thaliana HOM05D005307 ORTHO05D006695 1.3e-229 800.4 632 78.2
CARHR099860 Cardamine hirsuta HOM05D005307 ORTHO05D006695 7.9e-222 774.6 640 74.7
AL3G38890 Arabidopsis lyrata HOM05D005307 ORTHO05D006695 8.2e-219 764.6 597 77.1
Aa31LG8G10470 Aethionema arabicum HOM05D005307 ORTHO05D006695 1.9e-199 700.3 593 69.3
THA.LOC104808701 Tarenaya hassleriana HOM05D005307 ORTHO05D006695 4.1e-178 629.4 636 63.1
Potri.017G058300 Populus trichocarpa HOM05D005307 ORTHO05D006695 2.7e-177 626.7 523 69.2
Eucgr.H02691 Eucalyptus grandis HOM05D005307 ORTHO05D006695 2.5e-175 620.2 519 67.2
Prupe.1G163200 Prunus persica HOM05D005307 ORTHO05D006695 2.5e-175 620.2 528 68.9
Gohir.D10G137900 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.6e-174 617.5 522 69.0
Gorai.011G153100 Gossypium raimondii HOM05D005307 ORTHO05D006695 2.1e-174 617.1 522 69.0
Haze_11645 Corylus avellana HOM05D005307 ORTHO05D006695 1.0e-173 614.8 504 70.2
Gohir.A10G128100 Gossypium hirsutum HOM05D005307 ORTHO05D006695 5.7e-172 609.0 517 69.2
QL06p026221 Quercus lobata HOM05D005307 ORTHO05D006695 1.3e-171 607.8 512 71.1
Manes.03G144900 Manihot esculenta HOM05D005307 ORTHO05D006695 9.2e-170 601.7 521 67.6
Cfa014955 Carpinus fangiana HOM05D005307 ORTHO05D006695 1.2e-169 601.3 506 69.0
Lj3C779T0 Lonicera japonica HOM05D005307 ORTHO05D006695 2.7e-169 600.1 501 70.5
arahy.Tifrunner.gnm1.ann1.C718TQ Arachis hypogaea HOM05D005307 ORTHO05D006695 5.9e-169 599.0 498 68.9
TAR636G0868 Trochodendron aralioides HOM05D005307 ORTHO05D006695 1.0e-168 598.2 501 67.7
Potri.001G319000 Populus trichocarpa HOM05D005307 ORTHO05D006695 1.3e-168 597.8 505 67.9
SHI06461 Sapria himalayana HOM05D005307 ORTHO05D006695 1.3e-168 597.8 520 64.4
TPR.G11920 Trifolium pratense HOM05D005307 ORTHO05D006695 5.0e-168 595.9 521 67.0
arahy.Tifrunner.gnm1.ann1.GBN5SF Arachis hypogaea HOM05D005307 ORTHO05D006695 8.6e-168 595.1 498 68.7
Ca_17978_v3 Cicer arietinum L. HOM05D005307 ORTHO05D006695 8.6e-168 595.1 521 66.8
Ciclev10004448m.g Citrus clementina HOM05D005307 ORTHO05D006695 8.6e-168 595.1 523 67.3
TAR365G0199 Trochodendron aralioides HOM05D005307 ORTHO05D006695 4.3e-167 592.8 527 65.7
Actinidia35846 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.1e-166 590.5 653 57.3
RcHm_v2.0_Chr4g0413751 Rosa chinensis HOM05D005307 ORTHO05D006695 2.1e-166 590.5 521 69.3
Sabra16G0201900 Salix brachista HOM05D005307 ORTHO05D006695 2.8e-166 590.1 634 60.1
Sabra17G0051900 Salix brachista HOM05D005307 ORTHO05D006695 6.1e-166 589.0 536 64.7
MD04G1016500 Malus domestica HOM05D005307 ORTHO05D006695 1.0e-165 588.2 522 66.1
Dinv38181 Davidia involucrata HOM05D005307 ORTHO05D006695 5.2e-165 585.9 511 66.7
VMungo0251G3181 Vigna mungo HOM05D005307 ORTHO05D006695 6.8e-165 585.5 513 66.5
Glyma.08G109600 Glycine max HOM05D005307 ORTHO05D006695 1.2e-164 584.7 513 69.2
Migut.G00755 Erythranthe guttata HOM05D005307 ORTHO05D006695 2.0e-164 583.9 527 67.4
COL.COLO4_20217 Corchorus olitorius HOM05D005307 ORTHO05D006695 5.8e-164 582.4 522 65.7
Oeu002923.1 Olea europaea HOM05D005307 ORTHO05D006695 2.9e-163 580.1 513 66.7
Sc13g0000330 Simmondsia chinensis HOM05D005307 ORTHO05D006695 2.9e-163 580.1 526 66.5
GSVIVG01001478001 Vitis vinifera HOM05D005307 ORTHO05D006695 3.7e-163 579.7 497 69.8
Lsat_1_v5_gn_1_73301 Lactuca sativa HOM05D005307 ORTHO05D006695 8.3e-163 578.6 520 63.7
Sed0024269 Sechium edule HOM05D005307 ORTHO05D006695 8.3e-163 578.6 526 65.0
Eucgr.L00037 Eucalyptus grandis HOM05D005307 ORTHO05D006695 1.4e-162 577.8 519 64.4
Glyma.05G152900 Glycine max HOM05D005307 ORTHO05D006695 4.1e-162 576.2 513 66.1
Lj4g0027601 Lotus japonicus HOM05D005307 ORTHO05D006695 4.1e-162 576.2 508 65.9
Medtr8g081640 Medicago truncatula HOM05D005307 ORTHO05D006695 4.1e-162 576.2 522 65.3
HanXRQChr01g0022201 Helianthus annuus HOM05D005307 ORTHO05D006695 7.0e-162 575.5 500 64.6
Psat7g074720 Pisum sativum HOM05D005307 ORTHO05D006695 2.0e-161 573.9 521 65.8
Atru.chr3.1814 Acer truncatum HOM05D005307 ORTHO05D006695 4.6e-161 572.8 520 65.2
ClCG05G003160 Citrullus lanatus HOM05D005307 ORTHO05D006695 7.8e-161 572.0 504 66.5
Thecc.04G196200 Theobroma cacao HOM05D005307 ORTHO05D006695 1.0e-160 571.6 495 66.5
HPP92_024208 Vanilla planifolia HOM05D005307 ORTHO05D006695 1.3e-160 571.2 525 63.2
ATR0561G218 Amborella trichopoda HOM05D005307 ORTHO05D006695 6.6e-160 568.9 528 62.5
Lalb_Chr12g0205581 Lupinus albus HOM05D005307 ORTHO05D006695 6.6e-160 568.9 521 64.7
ECA248G0158 Erigeron canadensis HOM05D005307 ORTHO05D006695 9.5e-159 565.1 635 55.7
MELO3C006297.2 Cucumis melo HOM05D005307 ORTHO05D006695 4.7e-158 562.8 631 56.9
DCAR_005485 Daucus carota HOM05D005307 ORTHO05D006695 4.7e-158 562.8 516 63.4
Gorai.005G028400 Gossypium raimondii HOM05D005307 ORTHO05D006695 3.1e-157 560.1 521 64.1
CSS0004168 Camellia sinensis var. sinensis HOM05D005307 ORTHO05D006695 4.0e-157 559.7 642 56.2
Gohir.A02G019700 Gossypium hirsutum HOM05D005307 ORTHO05D006695 1.2e-156 558.1 522 63.8
CsaV3_3G010790 Cucumis sativus L. HOM05D005307 ORTHO05D006695 2.0e-156 557.4 631 56.6
Nn1g08214 Nelumbo nucifera HOM05D005307 ORTHO05D006695 5.8e-156 555.8 499 64.3
FAN22G0006 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.3e-155 554.7 521 64.3
Gohir.D02G023000 Gossypium hirsutum HOM05D005307 ORTHO05D006695 3.7e-155 553.1 521 63.3
Sed0018547 Sechium edule HOM05D005307 ORTHO05D006695 4.9e-155 552.7 528 62.9
Aqoxy2G03944 Aquilegia oxysepala HOM05D005307 ORTHO05D006695 1.9e-154 550.8 592 59.6
Cc03_g08380 Coffea canephora HOM05D005307 ORTHO05D006695 3.9e-152 543.1 521 63.0
SalBow8G0791 Salvia bowleyana HOM05D005307 ORTHO05D006695 5.0e-152 542.7 627 56.9
FvH4_4g13380 Fragaria vesca HOM05D005307 ORTHO05D006695 1.9e-151 540.8 521 63.1
FAN12G2903 Fragaria x ananassa HOM05D005307 ORTHO05D006695 1.9e-151 540.8 521 63.1
EL10Ac3g07462 Beta vulgaris HOM05D005307 ORTHO05D006695 2.5e-151 540.4 520 60.8
FAN07G1190 Fragaria x ananassa HOM05D005307 ORTHO05D006695 4.3e-151 539.7 521 63.0
FAN17G0194 Fragaria x ananassa HOM05D005307 ORTHO05D006695 5.6e-151 539.3 521 63.1
AUR62018565 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.1e-150 537.3 525 59.6
MSTRG.4240 Avicennia marina HOM05D005307 ORTHO05D006695 1.1e-149 535.0 593 60.4
AUR62020854 Chenopodium quinoa HOM05D005307 ORTHO05D006695 2.3e-149 533.9 522 60.5
PGSC0003DMG400024356 Solanum tuberosum HOM05D005307 ORTHO05D006695 1.5e-148 531.2 502 62.5
Sopen09g035180 Solanum pennellii HOM05D005307 ORTHO05D006695 7.5e-148 528.9 503 63.2
Nitab4.5_0002223g0040 Nicotiana tabacum HOM05D005307 ORTHO05D006695 9.9e-148 528.5 533 61.9
Nitab4.5_0000697g0080 Nicotiana tabacum HOM05D005307 ORTHO05D006695 1.3e-147 528.1 512 62.7
Solyc09g092250.3 Solanum lycopersicum HOM05D005307 ORTHO05D006695 3.7e-147 526.6 503 62.4
SGA_v2.0_scaffold19G08778 Striga asiatica HOM05D005307 ORTHO05D006695 1.9e-146 524.2 522 61.7
vmacro00443 Vaccinium macrocarpon HOM05D005307 ORTHO05D006695 1.1e-143 515.0 501 62.1
unitig_899.g14865 Utricularia gibba HOM05D005307 ORTHO05D006695 9.5e-143 511.9 497 61.6
CDE05G3407 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 4.7e-142 509.6 516 59.3
CDE05G2932 Ceratophyllum demersum HOM05D005307 ORTHO05D006695 9.9e-140 501.9 524 58.0
Oeu043443.2 Olea europaea HOM05D005307 ORTHO05D006695 2.9e-139 500.4 506 59.5
Phvul.003G050400 Phaseolus vulgaris HOM05D005307 ORTHO05D006695 2.4e-138 497.3 497 60.4
Peaxi162Scf00047g00141 Petunia axillaris HOM05D005307 ORTHO05D006695 1.8e-133 481.1 508 60.4
PSO063G4654 Papaver somniferum HOM05D005307 ORTHO05D006695 2.5e-127 460.7 515 55.5
CAN.G1155.22 Capsicum annuum HOM05D005307 ORTHO05D006695 1.6e-126 458.0 407 64.9
PSO017G6801 Papaver somniferum HOM05D005307 ORTHO05D006695 1.4e-125 454.9 515 55.1
Lalb_Chr07g0186791 Lupinus albus HOM05D005307 ORTHO05D006695 1.6e-121 441.4 525 55.0
C01p39750 Brassica napus HOM05D005307 ORTHO05D006695 2.1e-113 414.5 586 53.2
Zm00001eb334080 Zea mays HOM05D005307 ORTHO05D006695 1.4e-109 401.7 515 52.8
BolC1t03929H Brassica oleracea HOM05D005307 ORTHO05D006695 4.9e-107 393.3 299 79.9
Os01g0101600 Oryza sativa ssp. japonica HOM05D005307 ORTHO05D006695 1.4e-106 391.7 543 49.2
Cpa.g.sc83.42 Carica papaya HOM05D005307 ORTHO05D006695 3.5e-105 387.1 457 58.4
SalBow8G0142 Salvia bowleyana HOM05D005307 ORTHO05D006695 4.6e-105 386.7 298 70.5
CiPaw.01G117700 Carya illinoinensis HOM05D005307 ORTHO05D006695 7.9e-105 386.0 469 56.3
Zm00001eb127130 Zea mays HOM05D005307 ORTHO05D006695 3.0e-104 384.0 522 48.7
MBI07_g27653_MAGBIO Magnolia biondii HOM05D005307 ORTHO05D006695 2.6e-100 370.9 320 63.4
Mapoly0002s0028 Marchantia polymorpha HOM05D005307 ORTHO05D006695 8.8e-88 329.3 538 45.0
TAR625G1365 Trochodendron aralioides HOM05D005307 ORTHO05D006695 2.0e-87 328.2 224 73.7
A01p31200 Brassica napus HOM05D005307 ORTHO05D006695 1.3e-86 325.5 274 75.5
CBR_g48000 Chara braunii HOM05D005307 ORTHO05D006695 2.2e-75 288.1 547 38.6
Lj3A756G29 Lonicera japonica HOM05D005307 ORTHO05D006695 1.0e-67 262.7 251 69.3
Pp3c24_4280 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.5e-66 258.1 491 39.7
Pp3c8_5960 Physcomitrium patens HOM05D005307 ORTHO05D006695 2.7e-65 254.6 514 38.9
SEGI_03012 Sequoiadendron giganteum HOM05D005307 ORTHO05D006695 8.3e-62 243.0 319 47.0
Hund24403 Selenicereus undatus HOM05D005307 ORTHO05D006695 6.3e-54 216.9 179 63.7
arahy.Tifrunner.gnm1.ann1.K4I8TV Arachis hypogaea HOM05D005307 ORTHO05D006695 2.3e-51 208.4 208 63.0
Cpa.g.sc83.41 Carica papaya HOM05D005307 ORTHO05D006695 4.3e-50 204.1 184 61.4
Actinidia33177 Actinidia chinensis HOM05D005307 ORTHO05D006695 1.6e-49 202.2 234 62.4
SalBow8G1782 Salvia bowleyana HOM05D005307 ORTHO05D006695 6.4e-46 190.3 264 53.8
BolC2t09503H Brassica oleracea HOM05D005307 ORTHO05D006695 4.3e-34 151.0 297 41.8
BolC2t09502H Brassica oleracea HOM05D005307 ORTHO05D006695 2.1e-33 148.7 110 72.7
BraA02t07151Z Brassica rapa HOM05D005307 ORTHO05D027550 2.2e-30 138.7 521 47.8
BraA02t07152Z Brassica rapa HOM05D005307 ORTHO05D006695 5.1e-27 127.5 116 62.9
BcaC03g15749 Brassica carinata HOM05D005307 ORTHO05D006695 9.5e-26 123.2 83 73.5
C02p34840 Brassica napus HOM05D005307 ORTHO05D027550 2.1e-25 122.1 411 37.0
C02p34830 Brassica napus HOM05D005307 ORTHO05D006695 2.4e-24 118.6 116 62.1
Lj3A756G30 Lonicera japonica HOM05D005307 ORTHO05D006695 2.7e-20 105.1 69 73.9
BraA01t03245Z Brassica rapa HOM05D005307 ORTHO05D006695 3.6e-17 94.7 78 71.8
Psat7g074680 Pisum sativum HOM05D005307 ORTHO05D006695 4.8e-17 94.4 261 37.2
arahy.Tifrunner.gnm1.ann1.H01PAW Arachis hypogaea HOM05D005307 ORTHO05D006695 5.3e-16 90.9 67 67.2
Actinidia33176 Actinidia chinensis HOM05D005307 ORTHO05D006695 2.7e-12 78.6 144 41.0
C01p16760 Brassica napus HOM05D019998 ORTHO05D021590 1.0e-11 76.6 47 76.6
BolC1t01620H Brassica oleracea HOM05D019998 ORTHO05D021590 1.0e-11 76.6 47 76.6
arahy.Tifrunner.gnm1.ann1.V8QUIX Arachis hypogaea HOM05D000659 ORTHO05D006695 3.9e-11 74.7 75 72.0
C03p67510 Brassica napus HOM05D019998 ORTHO05D021590 3.9e-11 74.7 47 76.6
BolSC21t60274H Brassica oleracea HOM05D019998 ORTHO05D021590 3.9e-11 74.7 47 76.6
MCO02G402 Micromonas commoda HOM05D005307 ORTHO05D006695 2.5e-10 72.0 414 25.1
BcaC09g51115 Brassica carinata HOM05D019998 ORTHO05D021590 1.3e-09 69.7 47 74.5
Lj3C756T3 Lonicera japonica HOM05D005307 ORTHO05D006695 8.1e-09 67.0 90 54.4
AagrBONN_evm.TU.Sc2ySwM_344.2987 Anthoceros agrestis HOM05D005307 ORTHO05D006695 1.8e-08 65.9 117 51.3
BcaC01g02240 Brassica carinata HOM05D019998 ORTHO05D021590 1.8e-08 65.9 44 70.5
BolC2t09504H Brassica oleracea HOM05D005307 ORTHO05D027550 5.3e-08 64.3 211 37.9
Cre16.g672150 Chlamydomonas reinhardtii HOM05D005307 ORTHO05D006695 5.3e-08 64.3 419 25.5
Mapoly0001s0473 Marchantia polymorpha HOM05D042108 ORTHO05D048733 3.4e-07 61.6 118 52.5
BcaC03g15750 Brassica carinata HOM05D005307 ORTHO05D027550 1.7e-06 59.3 338 47.3


User provided reference genes

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