Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p07270 Brassica napus HOM05D002221 ORTHO05D002626 5.2e-33 143.7 67 100.0
BraA07t28515Z Brassica rapa HOM05D002221 ORTHO05D002626 2.0e-32 141.7 67 98.5
C07p11050 Brassica napus HOM05D002221 ORTHO05D002626 5.5e-14 80.5 42 83.3
BolC7t41575H Brassica oleracea HOM05D002221 ORTHO05D002626 2.3e-12 75.1 34 91.2
C05p59500 Brassica napus HOM05D002221 ORTHO05D002626 1.2e-08 62.8 33 81.8
Thhalv10021422m.g Eutrema salsugineum HOM05D002221 ORTHO05D002626 1.2e-08 62.8 126 35.7
A05p40420 Brassica napus HOM05D002221 ORTHO05D002626 1.5e-08 62.4 33 81.8
BolC5t34606H Brassica oleracea HOM05D002221 ORTHO05D002626 1.5e-08 62.4 33 81.8
BraA05t22775Z Brassica rapa HOM05D002221 ORTHO05D002626 1.5e-08 62.4 33 81.8
BcaC05g29572 Brassica carinata HOM05D002221 ORTHO05D002626 2.6e-08 61.6 126 36.5
BraA01t04361Z Brassica rapa HOM05D002221 ORTHO05D002626 2.6e-08 61.6 126 34.9
Carub.0003s0738 Capsella rubella HOM05D002221 ORTHO05D002626 3.4e-08 61.2 63 57.1
BcaC09g47948 Brassica carinata HOM05D002221 ORTHO05D002626 4.5e-08 60.8 63 57.1
BolC1t05531H Brassica oleracea HOM05D002221 ORTHO05D002626 4.5e-08 60.8 63 57.1
CARHR082510 Cardamine hirsuta HOM05D002221 ORTHO05D002626 4.5e-08 60.8 63 57.1
Sp3g06730 Schrenkiella parvula HOM05D002221 ORTHO05D002626 4.5e-08 60.8 63 57.1
AL3G19170 Arabidopsis lyrata HOM05D002221 ORTHO05D002626 7.6e-08 60.1 63 57.1
BcaB03g14680 Brassica carinata HOM05D002221 ORTHO05D002626 7.6e-08 60.1 33 78.8
BcaC01g04292 Brassica carinata HOM05D002221 ORTHO05D002626 7.6e-08 60.1 33 78.8
C03p43060 Brassica napus HOM05D002221 ORTHO05D002626 7.6e-08 60.1 33 78.8
BolC3t16574H Brassica oleracea HOM05D002221 ORTHO05D002626 7.6e-08 60.1 33 78.8
THA.LOC104826660 Tarenaya hassleriana HOM05D002221 ORTHO05D002626 7.6e-08 60.1 63 49.2
THA.LOC104819045 Tarenaya hassleriana HOM05D002221 ORTHO05D002626 1.3e-07 59.3 63 49.2
AT3G07800 Arabidopsis thaliana HOM05D002221 ORTHO05D002626 1.7e-07 58.9 63 57.1
Aa31LG5G18380 Aethionema arabicum HOM05D002221 ORTHO05D002626 2.9e-07 58.2 63 49.2
MSTRG.6650 Avicennia marina HOM05D002221 ORTHO05D002626 2.9e-07 58.2 36 63.9
A03p35430 Brassica napus HOM05D002221 ORTHO05D002626 2.9e-07 58.2 33 75.8
BraA03t12720Z Brassica rapa HOM05D002221 ORTHO05D002626 2.9e-07 58.2 33 75.8
Hma1.2p1_0405F.1_g145780 Hydrangea macrophylla HOM05D002221 ORTHO05D002626 2.9e-07 58.2 33 69.7
PGSC0003DMG402007356 Solanum tuberosum HOM05D002221 ORTHO05D002626 2.9e-07 58.2 36 69.4
GSVIVG01002055001 Vitis vinifera HOM05D002221 ORTHO05D010139 2.9e-07 58.2 63 54.0
Migut.M00022 Erythranthe guttata HOM05D002221 ORTHO05D002626 3.8e-07 57.8 36 66.7
SalBow7G4136 Salvia bowleyana HOM05D002221 ORTHO05D002626 3.8e-07 57.8 36 66.7
CSS0020136 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 4.9e-07 57.4 35 71.4
Aqoxy1G04013 Aquilegia oxysepala HOM05D002221 ORTHO05D002626 6.5e-07 57.0 33 72.7
CSS0000293 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 6.5e-07 57.0 33 72.7
CSS0006770 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 6.5e-07 57.0 33 72.7
HanXRQChr04g0126691 Helianthus annuus HOM05D002221 ORTHO05D002626 6.5e-07 57.0 33 72.7
Lsat_1_v5_gn_7_96100 Lactuca sativa HOM05D002221 ORTHO05D002626 8.4e-07 56.6 63 46.0
SGA_v2.0_scaffold73G24521 Striga asiatica HOM05D002221 ORTHO05D002626 8.4e-07 56.6 36 66.7
FAN21G1606 Fragaria x ananassa HOM05D002221 ORTHO05D010139 1.1e-06 56.2 36 66.7
Lj6g0026578 Lotus japonicus HOM05D002221 ORTHO05D002626 1.1e-06 56.2 36 69.4
Solyc11g065760.2 Solanum lycopersicum HOM05D002221 ORTHO05D002626 1.1e-06 56.2 36 66.7
Sopen11g025530 Solanum pennellii HOM05D002221 ORTHO05D002626 1.1e-06 56.2 36 66.7
DCAR_021108 Daucus carota HOM05D002221 ORTHO05D002626 1.4e-06 55.8 63 44.4
FvH4_3g00700 Fragaria vesca HOM05D002221 ORTHO05D002626 1.4e-06 55.8 36 66.7
Glyma.13G025800 Glycine max HOM05D002221 ORTHO05D002626 1.4e-06 55.8 36 69.4
Phvul.006G013500 Phaseolus vulgaris HOM05D002221 ORTHO05D002626 1.4e-06 55.8 36 69.4
VMungo0540G2162 Vigna mungo HOM05D002221 ORTHO05D002626 1.4e-06 55.8 36 69.4
HanXRQChr11g0328161 Helianthus annuus HOM05D002221 ORTHO05D002626 1.9e-06 55.5 63 46.0
QL08p028790 Quercus lobata HOM05D002221 ORTHO05D002626 1.9e-06 55.5 63 52.4
Rhsim06G0173700 Rhododendron simsii HOM05D002221 ORTHO05D002626 1.9e-06 55.5 63 47.6
Atru.chr6.3349 Acer truncatum HOM05D002221 ORTHO05D002626 2.5e-06 55.1 63 46.0
Actinidia03609 Actinidia chinensis HOM05D002221 ORTHO05D002626 2.5e-06 55.1 33 69.7
Cfa014250 Carpinus fangiana HOM05D002221 ORTHO05D002626 2.5e-06 55.1 63 50.8
Haze_12699 Corylus avellana HOM05D002221 ORTHO05D002626 2.5e-06 55.1 63 50.8
MELO3C025541.2 Cucumis melo HOM05D002221 ORTHO05D002626 2.5e-06 55.1 33 66.7
CsaV3_1G017040 Cucumis sativus L. HOM05D002221 ORTHO05D002626 2.5e-06 55.1 33 66.7
CsaV3_UNG053440 Cucumis sativus L. HOM05D002221 ORTHO05D002626 2.5e-06 55.1 33 66.7
PSO541G4666 Papaver somniferum HOM05D002221 ORTHO05D002626 2.5e-06 55.1 33 69.7
Potri.002G222300 Populus trichocarpa HOM05D002221 ORTHO05D002626 2.5e-06 55.1 36 66.7
arahy.Tifrunner.gnm1.ann1.DY6AJ3 Arachis hypogaea HOM05D002221 ORTHO05D002626 3.2e-06 54.7 36 69.4
arahy.Tifrunner.gnm1.ann1.E5VA16 Arachis hypogaea HOM05D002221 ORTHO05D002626 3.2e-06 54.7 36 69.4
arahy.Tifrunner.gnm1.ann1.Q8BPMD Arachis hypogaea HOM05D002221 ORTHO05D002626 3.2e-06 54.7 36 69.4
CAN.G294.14 Capsicum annuum HOM05D002221 ORTHO05D002626 3.2e-06 54.7 33 66.7
Lalb_Chr24g0402701 Lupinus albus HOM05D002221 ORTHO05D002626 3.2e-06 54.7 36 63.9
Peaxi162Scf00004g02331 Petunia axillaris HOM05D002221 ORTHO05D002626 3.2e-06 54.7 63 44.4
SGA_v2.0_scaffold4G01860 Striga asiatica HOM05D002221 ORTHO05D002626 3.2e-06 54.7 63 47.6
TPR.G19334 Trifolium pratense HOM05D002221 ORTHO05D002626 3.2e-06 54.7 63 46.0
vmacro12109 Vaccinium macrocarpon HOM05D002221 ORTHO05D002626 3.2e-06 54.7 63 47.6
Actinidia21448 Actinidia chinensis HOM05D002221 ORTHO05D002626 4.2e-06 54.3 63 49.2
Cc00_g04170 Coffea canephora HOM05D002221 ORTHO05D002626 4.2e-06 54.3 63 44.4
Dinv05840 Davidia involucrata HOM05D002221 ORTHO05D002626 4.2e-06 54.3 63 50.8
FAN25G1468 Fragaria x ananassa HOM05D002221 ORTHO05D002626 4.2e-06 54.3 36 63.9
MBI16_g11549_MAGBIO Magnolia biondii HOM05D002221 ORTHO05D010139 4.2e-06 54.3 36 66.7
Nitab4.5_0001587g0110 Nicotiana tabacum HOM05D002221 ORTHO05D002626 4.2e-06 54.3 36 63.9
Nitab4.5_0007133g0030 Nicotiana tabacum HOM05D002221 ORTHO05D002626 4.2e-06 54.3 36 63.9
Nitab4.5_0008167g0010 Nicotiana tabacum HOM05D002221 ORTHO05D002626 4.2e-06 54.3 63 49.2
MSTRG.7153 Avicennia marina HOM05D002221 ORTHO05D002626 5.5e-06 53.9 33 69.7
CSS0003824 Camellia sinensis var. sinensis HOM05D002221 ORTHO05D002626 5.5e-06 53.9 33 69.7
Ciclev10016471m.g Citrus clementina HOM05D002221 ORTHO05D002626 5.5e-06 53.9 36 66.7
COL.COLO4_33034 Corchorus olitorius HOM05D002221 ORTHO05D002626 5.5e-06 53.9 38 60.5
DCAR_004893 Daucus carota HOM05D002221 ORTHO05D002626 5.5e-06 53.9 33 69.7
Gorai.007G167400 Gossypium raimondii HOM05D002221 ORTHO05D002626 5.5e-06 53.9 63 44.4
HanXRQChr08g0207961 Helianthus annuus HOM05D002221 ORTHO05D002626 5.5e-06 53.9 41 63.4
Lsat_1_v5_gn_6_62421 Lactuca sativa HOM05D002221 ORTHO05D010139 5.5e-06 53.9 41 63.4
Oeu047059.2 Olea europaea HOM05D002221 ORTHO05D010139 5.5e-06 53.9 62 53.2
Psat5g101320 Pisum sativum HOM05D002221 ORTHO05D002626 5.5e-06 53.9 36 66.7
Sabra14G0123100 Salix brachista HOM05D002221 ORTHO05D002626 5.5e-06 53.9 36 63.9
TWI75G1127 Tripterygium wilfordii HOM05D002221 ORTHO05D002626 5.5e-06 53.9 63 44.4
GSVIVG01030042001 Vitis vinifera HOM05D002221 ORTHO05D002626 5.5e-06 53.9 63 50.8
EL10Ac9g22740 Beta vulgaris HOM05D002221 ORTHO05D002626 7.1e-06 53.5 63 42.9
Ca_16366_v3 Cicer arietinum L. HOM05D002221 ORTHO05D002626 7.1e-06 53.5 36 66.7
ClCG02G009420 Citrullus lanatus HOM05D002221 ORTHO05D002626 7.1e-06 53.5 36 63.9
Duzib138G0880 Durio zibethinus HOM05D002221 ORTHO05D002626 7.1e-06 53.5 63 44.4
Manes.13G064000 Manihot esculenta HOM05D002221 ORTHO05D002626 7.1e-06 53.5 36 61.1
PGR042G3580 Punica granatum HOM05D002221 ORTHO05D002626 7.1e-06 53.5 63 49.2
SalBow8G4907 Salvia bowleyana HOM05D002221 ORTHO05D010139 7.1e-06 53.5 63 47.6
Sed0012115 Sechium edule HOM05D002221 ORTHO05D002626 7.1e-06 53.5 33 69.7
MELO3C025990.2 Cucumis melo HOM05D002221 ORTHO05D002626 9.3e-06 53.1 36 63.9
CsaV3_6G009390 Cucumis sativus L. HOM05D002221 ORTHO05D002626 9.3e-06 53.1 36 63.9
Dinv07854 Davidia involucrata HOM05D002221 ORTHO05D002626 9.3e-06 53.1 63 42.9
Lj8A133T58 Lonicera japonica HOM05D002221 ORTHO05D002626 9.3e-06 53.1 33 66.7
Medtr3g083230 Medicago truncatula HOM05D002221 ORTHO05D002626 9.3e-06 53.1 36 63.9
PGSC0003DMG401028822 Solanum tuberosum HOM05D002221 ORTHO05D002626 9.3e-06 53.1 33 66.7
SGA_v2.0_scaffold7G03727 Striga asiatica HOM05D002221 ORTHO05D010139 9.3e-06 53.1 63 49.2


User provided reference genes

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