Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p00840 Brassica napus HOM05D005801 ORTHO05D008555 1.3e-302 1042.3 544 100.0
BraA07t27882Z Brassica rapa HOM05D005801 ORTHO05D008555 1.4e-288 995.7 547 95.6
BcaC06g36648 Brassica carinata HOM05D005801 ORTHO05D008555 7.3e-266 920.2 565 89.6
BolC7t40588H Brassica oleracea HOM05D005801 ORTHO05D008555 7.3e-266 920.2 565 89.6
C07p01810 Brassica napus HOM05D005801 ORTHO05D008555 5.4e-261 904.0 566 88.3
BcaB03g16775 Brassica carinata HOM05D005801 ORTHO05D008555 2.3e-256 888.6 583 85.1
Sp3g33210 Schrenkiella parvula HOM05D005801 ORTHO05D008555 2.2e-230 802.4 615 75.6
Thhalv10002296m.g Eutrema salsugineum HOM05D005801 ORTHO05D008555 2.1e-225 785.8 609 74.5
AT2G19870 Arabidopsis thaliana HOM05D005801 ORTHO05D008555 1.6e-212 743.0 602 73.8
Carub.0003s3414 Capsella rubella HOM05D005801 ORTHO05D008555 2.4e-208 729.2 603 72.3
AL3G48350 Arabidopsis lyrata HOM05D005801 ORTHO05D008555 3.8e-206 721.8 590 73.7
CARHR110310 Cardamine hirsuta HOM05D005801 ORTHO05D008555 1.4e-200 703.4 594 70.7
THA.LOC104814572 Tarenaya hassleriana HOM05D005801 ORTHO05D008555 5.5e-157 558.5 605 56.4
Aa31LG8G16820 Aethionema arabicum HOM05D005801 ORTHO05D008555 2.3e-139 500.0 643 50.7
Manes.16G108700 Manihot esculenta HOM05D005801 ORTHO05D008555 4.7e-132 475.7 357 71.7
Gohir.D07G009800 Gossypium hirsutum HOM05D005801 ORTHO05D008555 2.3e-131 473.4 574 52.1
Gorai.001G010100 Gossypium raimondii HOM05D005801 ORTHO05D008555 2.3e-131 473.4 565 52.9
RcHm_v2.0_Chr2g0091911 Rosa chinensis HOM05D005801 ORTHO05D008555 6.8e-131 471.9 473 58.4
Psat7g016720 Pisum sativum HOM05D005801 ORTHO05D008555 8.9e-131 471.5 353 70.8
Prupe.7G219800 Prunus persica HOM05D005801 ORTHO05D008555 1.5e-130 470.7 431 62.2
FAN23G0343 Fragaria x ananassa HOM05D005801 ORTHO05D008555 3.4e-130 469.5 354 70.6
FAN19G1715 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.8e-130 468.8 354 70.1
Gohir.A07G009500 Gossypium hirsutum HOM05D005801 ORTHO05D008555 5.8e-130 468.8 567 52.4
FAN28G2516 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.9e-129 466.5 450 60.4
CSS0008146 Camellia sinensis var. sinensis HOM05D005801 ORTHO05D008555 4.9e-129 465.7 359 70.2
Cfa003179 Carpinus fangiana HOM05D005801 ORTHO05D008555 2.4e-128 463.4 370 67.3
FAN26G1273 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.4e-128 463.4 354 69.2
FAN19G0317 Fragaria x ananassa HOM05D005801 ORTHO05D008555 2.1e-127 460.3 341 71.3
Oeu053186.1 Olea europaea HOM05D005801 ORTHO05D008555 3.5e-127 459.5 336 71.7
Thecc.09G100600 Theobroma cacao HOM05D005801 ORTHO05D008555 4.6e-127 459.1 580 51.9
COL.COLO4_34743 Corchorus olitorius HOM05D005801 ORTHO05D008555 6.0e-127 458.8 425 62.6
Glyma.08G033500 Glycine max HOM05D005801 ORTHO05D008555 7.8e-127 458.4 567 52.6
Peaxi162Scf00720g00044 Petunia axillaris HOM05D005801 ORTHO05D008555 7.8e-127 458.4 426 60.6
CAN.G370.29 Capsicum annuum HOM05D005801 ORTHO05D008555 1.7e-126 457.2 454 59.3
Duzib150G1339 Durio zibethinus HOM05D005801 ORTHO05D008555 3.0e-126 456.4 587 52.3
Nitab4.5_0001703g0010 Nicotiana tabacum HOM05D005801 ORTHO05D008555 3.0e-126 456.4 486 55.6
VMungo0251G1949 Vigna mungo HOM05D005801 ORTHO05D008555 3.0e-126 456.4 569 51.5
Duzib132G0722 Durio zibethinus HOM05D005801 ORTHO05D008555 3.9e-126 456.1 436 62.2
MD02G1065700 Malus domestica HOM05D005801 ORTHO05D008555 3.9e-126 456.1 367 65.1
Nitab4.5_0000066g0110 Nicotiana tabacum HOM05D005801 ORTHO05D008555 5.1e-126 455.7 483 56.3
PGSC0003DMG400038162 Solanum tuberosum HOM05D005801 ORTHO05D008555 5.1e-126 455.7 440 59.3
Ca_17365_v3 Cicer arietinum L. HOM05D005801 ORTHO05D008555 8.6e-126 454.9 568 50.9
FvH4_1g06150 Fragaria vesca HOM05D005801 ORTHO05D008555 8.6e-126 454.9 504 55.6
Phvul.002G308600 Phaseolus vulgaris HOM05D005801 ORTHO05D008555 8.6e-126 454.9 563 51.3
Sopen05g014540 Solanum pennellii HOM05D005801 ORTHO05D008555 1.5e-125 454.1 440 58.9
arahy.Tifrunner.gnm1.ann1.BF4XTR Arachis hypogaea HOM05D005801 ORTHO05D008555 1.9e-125 453.8 569 51.3
vmacro06253 Vaccinium macrocarpon HOM05D005801 ORTHO05D008555 1.9e-125 453.8 369 68.0
Sabra18G0076100 Salix brachista HOM05D005801 ORTHO05D008555 4.3e-125 452.6 606 49.5
CsaV3_1G039790 Cucumis sativus L. HOM05D005801 ORTHO05D008555 5.6e-125 452.2 514 55.1
FAN26G1315 Fragaria x ananassa HOM05D005801 ORTHO05D008555 5.6e-125 452.2 352 68.8
Lalb_Chr05g0223241 Lupinus albus HOM05D005801 ORTHO05D008555 5.6e-125 452.2 572 50.9
Potri.018G087800 Populus trichocarpa HOM05D005801 ORTHO05D008555 5.6e-125 452.2 614 50.0
Migut.K00541 Erythranthe guttata HOM05D005801 ORTHO05D008555 7.3e-125 451.8 437 58.6
Lj4g0016627 Lotus japonicus HOM05D005801 ORTHO05D008555 9.6e-125 451.4 581 50.9
CANSAT21G1751 Cannabis sativa HOM05D005801 ORTHO05D008555 1.6e-124 450.7 469 57.6
Cc06_g10480 Coffea canephora HOM05D005801 ORTHO05D008555 2.8e-124 449.9 512 53.3
DCAR_028663 Daucus carota HOM05D005801 ORTHO05D008555 2.8e-124 449.9 354 67.5
CiPaw.04G157900 Carya illinoinensis HOM05D005801 ORTHO05D008555 4.7e-124 449.1 590 49.2
Medtr8g102480 Medicago truncatula HOM05D005801 ORTHO05D008555 1.4e-123 447.6 571 50.8
Aqoxy7G01401 Aquilegia oxysepala HOM05D005801 ORTHO05D008555 2.4e-123 446.8 344 66.6
Eucgr.C00997 Eucalyptus grandis HOM05D005801 ORTHO05D008555 4.0e-123 446.0 562 52.5
QL02p041581 Quercus lobata HOM05D005801 ORTHO05D008555 6.8e-123 445.3 426 60.3
TAR636G1320 Trochodendron aralioides HOM05D005801 ORTHO05D008555 6.8e-123 445.3 440 58.9
Solyc05g017990.4 Solanum lycopersicum HOM05D005801 ORTHO05D008555 8.9e-123 444.9 371 64.2
Lj4P387T11 Lonicera japonica HOM05D005801 ORTHO05D008555 1.2e-122 444.5 421 59.1
GSVIVG01015302001 Vitis vinifera HOM05D005801 ORTHO05D008555 4.4e-122 442.6 586 50.3
Ciclev10007826m.g Citrus clementina HOM05D005801 ORTHO05D008555 5.8e-122 442.2 591 49.4
MELO3C015412.2 Cucumis melo HOM05D005801 ORTHO05D008555 2.2e-121 440.3 512 53.7
ECA234G2262 Erigeron canadensis HOM05D005801 ORTHO05D008555 2.2e-121 440.3 343 67.3
TWI63G0976 Tripterygium wilfordii HOM05D005801 ORTHO05D008555 2.2e-121 440.3 608 48.0
MSTRG.10602 Avicennia marina HOM05D005801 ORTHO05D008555 3.8e-121 439.5 430 59.5
Sed0027809 Sechium edule HOM05D005801 ORTHO05D008555 3.8e-121 439.5 384 63.3
SalBow1G2797 Salvia bowleyana HOM05D005801 ORTHO05D008555 2.4e-120 436.8 407 61.9
Rhsim03G0236600 Rhododendron simsii HOM05D005801 ORTHO05D008555 4.2e-120 436.0 447 59.1
PSO063G7511 Papaver somniferum HOM05D005801 ORTHO05D008555 7.1e-120 435.3 310 74.2
Lsat_1_v5_gn_5_144900 Lactuca sativa HOM05D005801 ORTHO05D008555 1.2e-119 434.5 353 65.2
Dinv36686 Davidia involucrata HOM05D005801 ORTHO05D008555 4.6e-119 432.6 561 51.2
PSO832G4312 Papaver somniferum HOM05D005801 ORTHO05D008555 6.0e-119 432.2 301 75.4
EL10Ac8g18377 Beta vulgaris HOM05D005801 ORTHO05D008555 5.1e-118 429.1 572 47.7
Sc18g0001500 Simmondsia chinensis HOM05D005801 ORTHO05D008555 8.7e-118 428.3 561 49.6
unitig_46.g18397 Utricularia gibba HOM05D005801 ORTHO05D008555 9.6e-117 424.9 359 62.7
SGA_v2.0_scaffold129G34141 Striga asiatica HOM05D005801 ORTHO05D008555 6.9e-115 418.7 344 64.0
SHI02689 Sapria himalayana HOM05D005801 ORTHO05D008555 9.3e-112 408.3 427 54.6
Cpa.g.sc40.94 Carica papaya HOM05D005801 ORTHO05D008555 2.1e-111 407.1 280 76.8
CDE04G1187 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 4.6e-111 406.0 546 47.1
ATR0681G166 Amborella trichopoda HOM05D005801 ORTHO05D008555 7.8e-111 405.2 351 61.0
MBI04_g34406_MAGBIO Magnolia biondii HOM05D005801 ORTHO05D008555 3.0e-110 403.3 387 61.5
Actinidia32650 Actinidia chinensis HOM05D005801 ORTHO05D008555 1.5e-109 401.0 318 68.6
Zm00001eb371210 Zea mays HOM05D005801 ORTHO05D008555 4.3e-109 399.4 324 64.8
HanXRQChr10g0318941 Helianthus annuus HOM05D005801 ORTHO05D008555 9.0e-107 391.7 281 73.0
HanXRQChr14g0438761 Helianthus annuus HOM05D005801 ORTHO05D008555 9.0e-107 391.7 281 73.0
HPP92_009088 Vanilla planifolia HOM05D005801 ORTHO05D008555 1.5e-106 391.0 439 54.2
HanXRQChr10g0318931 Helianthus annuus HOM05D005801 ORTHO05D008555 4.5e-106 389.4 281 72.2
AUR62021403 Chenopodium quinoa HOM05D005801 ORTHO05D008555 2.6e-98 363.6 341 58.4
MD15G1196600 Malus domestica HOM05D005801 ORTHO05D008555 5.5e-96 355.9 260 71.2
AUR62010892 Chenopodium quinoa HOM05D005801 ORTHO05D008555 2.7e-95 353.6 341 57.8
CBR_g20364 Chara braunii HOM05D005801 ORTHO05D008555 3.1e-75 287.0 319 50.5
Mapoly0135s0034 Marchantia polymorpha HOM05D005801 ORTHO05D008555 5.9e-74 282.7 475 40.0
Pp3c17_17180 Physcomitrium patens HOM05D005801 ORTHO05D008555 1.4e-72 278.1 291 52.6
FvH4_1g06190 Fragaria vesca HOM05D005801 ORTHO05D008555 8.8e-70 268.9 176 75.6
SMO367G0373 Selaginella moellendorffii HOM05D005801 ORTHO05D008555 5.2e-62 243.0 271 49.8
Lalb_Chr09g0331541 Lupinus albus HOM05D005801 ORTHO05D008555 2.8e-60 237.3 216 63.9
Lj6C67T4 Lonicera japonica HOM05D005801 ORTHO05D008555 1.1e-51 208.8 178 64.0
MCO03G539 Micromonas commoda HOM05D005801 ORTHO05D008555 2.2e-49 201.1 298 43.0
CAN.G640.23 Capsicum annuum HOM05D005801 ORTHO05D008555 6.5e-49 199.5 198 55.1
PRCOL_00003145 Prasinoderma coloniale HOM05D005801 ORTHO05D008555 7.2e-48 196.1 288 42.7
Cre13.g566150 Chlamydomonas reinhardtii HOM05D005801 ORTHO05D008555 4.0e-46 190.3 299 39.1
Os01g0742000 Oryza sativa ssp. japonica HOM05D005801 ORTHO05D008555 4.0e-46 190.3 152 67.1
CAN.G775.15 Capsicum annuum HOM05D005801 ORTHO05D008555 7.0e-43 179.5 281 40.9
CDE02G3237 Ceratophyllum demersum HOM05D005801 ORTHO05D008555 2.7e-42 177.6 147 62.6
HanXRQChr12g0378121 Helianthus annuus HOM05D005801 ORTHO05D008555 1.5e-32 145.2 151 50.3
CAN.G1277.2 Capsicum annuum HOM05D005801 ORTHO05D008555 2.9e-28 131.0 284 35.9
CAN.G77.3 Capsicum annuum HOM05D005801 ORTHO05D008555 2.6e-21 107.8 83 63.9
BcaC04g20246 Brassica carinata HOM05D005801 ORTHO05D016715 1.9e-19 101.7 73 68.5
BolC9t57462H Brassica oleracea HOM05D005801 ORTHO05D016715 1.9e-19 101.7 73 68.5
C09p45950 Brassica napus HOM05D005801 ORTHO05D016715 3.2e-19 100.9 73 67.1
A07p26140 Brassica napus HOM05D005801 ORTHO05D013666 1.3e-17 95.5 73 67.1
BcaC03g16316 Brassica carinata HOM05D005801 ORTHO05D016715 3.9e-17 94.0 71 64.8
BraA07t30260Z Brassica rapa HOM05D005801 ORTHO05D013666 6.6e-17 93.2 73 65.8
BcaB08g34890 Brassica carinata HOM05D005801 ORTHO05D008555 3.3e-16 90.9 76 71.1
C03p54440 Brassica napus HOM05D005801 ORTHO05D041341 1.1e-14 85.9 56 73.2
BolC3t17730H Brassica oleracea HOM05D005801 ORTHO05D041341 1.1e-14 85.9 56 73.2
Lalb_Chr09g0331551 Lupinus albus HOM05D005801 ORTHO05D008555 8.9e-14 82.8 298 30.9
EL10Ac8g19871 Beta vulgaris HOM05D005801 ORTHO05D008555 2.6e-13 81.3 77 55.8
BcaC04g22492 Brassica carinata HOM05D005801 ORTHO05D016715 7.6e-13 79.7 64 65.6
Ca_28666_v3 Cicer arietinum L. HOM05D005801 ORTHO05D009370 9.9e-13 79.3 232 30.2
BcaB07g33268 Brassica carinata HOM05D005801 ORTHO05D016715 1.2e-07 62.4 54 59.3
BcaB07g33439 Brassica carinata HOM05D005801 ORTHO05D016715 1.2e-07 62.4 54 59.3
Lsat_1_v5_gn_4_170180 Lactuca sativa HOM05D006539 ORTHO05D008694 1.2e-07 62.4 201 24.9
ECA232G1677 Erigeron canadensis HOM05D006539 ORTHO05D008694 2.8e-07 61.2 199 24.1
MD01G1041100 Malus domestica HOM05D007191 ORTHO05D009370 8.1e-07 59.7 207 30.0
Eucgr.H03643 Eucalyptus grandis HOM05D006695 ORTHO05D008239 2.4e-06 58.2 193 26.4
Lju41A8T108 Lonicera japonica HOM05D006539 ORTHO05D008694 3.1e-06 57.8 199 25.6
BcaC01g01198 Brassica carinata HOM05D041247 ORTHO05D016715 4.0e-06 57.4 71 47.9
Sed0012723 Sechium edule HOM05D003516 ORTHO05D004068 4.0e-06 57.4 204 26.5
BcaB01g00402 Brassica carinata HOM05D041247 ORTHO05D016715 5.2e-06 57.0 71 47.9
CANSAT64G0188 Cannabis sativa HOM05D006539 ORTHO05D008694 5.2e-06 57.0 174 27.0
Prupe.6G204900 Prunus persica HOM05D007191 ORTHO05D009370 5.2e-06 57.0 190 31.6
THA.LOC104822345 Tarenaya hassleriana HOM05D006539 ORTHO05D008694 8.9e-06 56.2 174 26.4


User provided reference genes

Program Settings