Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A07p00310 Brassica napus HOM05D004007 ORTHO05D005127 2.8e-233 811.6 422 100.0
BraA07t27822Z Brassica rapa HOM05D004007 ORTHO05D005127 1.5e-231 805.8 422 99.3
BcaC06g36729 Brassica carinata HOM05D004007 ORTHO05D005127 1.9e-229 798.9 422 98.6
BolC7t40509H Brassica oleracea HOM05D004007 ORTHO05D005127 1.9e-229 798.9 422 98.6
C07p00650 Brassica napus HOM05D004007 ORTHO05D005127 2.5e-229 798.5 422 98.3
BcaB08g34906 Brassica carinata HOM05D004007 ORTHO05D005127 2.0e-226 788.9 422 96.9
BcaB03g16833 Brassica carinata HOM05D004007 ORTHO05D005127 2.6e-226 788.5 422 96.9
BcaB07g31587 Brassica carinata HOM05D004007 ORTHO05D005127 3.3e-226 788.1 422 96.7
Thhalv10001996m.g Eutrema salsugineum HOM05D004007 ORTHO05D005127 2.2e-225 785.4 420 96.9
BraA09t37039Z Brassica rapa HOM05D004007 ORTHO05D005127 2.8e-225 785.0 422 96.4
C09p16710 Brassica napus HOM05D004007 ORTHO05D005127 3.7e-225 784.6 422 96.4
BolC9t54570H Brassica oleracea HOM05D004007 ORTHO05D005127 3.7e-225 784.6 422 96.4
A09p13930 Brassica napus HOM05D004007 ORTHO05D005127 4.8e-225 784.3 422 96.4
Sp3g33640 Schrenkiella parvula HOM05D004007 ORTHO05D005127 1.1e-224 783.1 422 95.5
BcaC04g22683 Brassica carinata HOM05D004007 ORTHO05D005127 2.4e-224 781.9 422 96.2
AL3G53400 Arabidopsis lyrata HOM05D004007 ORTHO05D005127 4.1e-224 781.2 422 95.7
AT2G20420 Arabidopsis thaliana HOM05D004007 ORTHO05D005127 7.0e-224 780.4 422 95.3
Carub.0003s3481 Capsella rubella HOM05D004007 ORTHO05D005127 9.1e-224 780.0 422 95.3
Aa31LG8G17390 Aethionema arabicum HOM05D004007 ORTHO05D005127 6.5e-222 773.9 422 94.5
THA.LOC104820071 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 3.8e-214 748.0 422 91.0
QL09p040238 Quercus lobata HOM05D004007 ORTHO05D005127 3.7e-209 731.5 418 89.2
THA.LOC104804042 Tarenaya hassleriana HOM05D004007 ORTHO05D005127 8.3e-209 730.3 419 89.5
Atru.chr5.1778 Acer truncatum HOM05D004007 ORTHO05D005127 4.1e-208 728.0 422 87.9
CiPaw.03G267900 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.4e-208 727.6 418 88.8
CARHR110970 Cardamine hirsuta HOM05D004007 ORTHO05D005127 9.1e-208 726.9 389 96.7
Manes.13G037000 Manihot esculenta HOM05D004007 ORTHO05D005127 9.1e-208 726.9 422 87.9
CANSAT01G1551 Cannabis sativa HOM05D004007 ORTHO05D005127 3.5e-207 724.9 418 88.5
CiPaw.04G188500 Carya illinoinensis HOM05D004007 ORTHO05D005127 5.9e-207 724.2 418 88.8
Gorai.001G179900 Gossypium raimondii HOM05D004007 ORTHO05D005127 2.9e-206 721.8 422 87.0
Prupe.8G219400 Prunus persica HOM05D004007 ORTHO05D005127 3.8e-206 721.5 419 87.1
Aqoxy2G03706 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 6.5e-206 720.7 422 87.0
Thecc.01G253900 Theobroma cacao HOM05D004007 ORTHO05D005127 6.5e-206 720.7 422 86.7
Gohir.A07G150500 Gossypium hirsutum HOM05D004007 ORTHO05D005127 8.6e-206 720.3 422 86.7
PGSC0003DMG400020149 Solanum tuberosum HOM05D004007 ORTHO05D005127 8.6e-206 720.3 420 86.9
COL.COLO4_34373 Corchorus olitorius HOM05D004007 ORTHO05D005127 1.5e-205 719.5 422 87.0
Gohir.D07G157000 Gossypium hirsutum HOM05D004007 ORTHO05D005127 3.2e-205 718.4 422 86.7
TAR636G3081 Trochodendron aralioides HOM05D004007 ORTHO05D005127 3.2e-205 718.4 421 86.7
Solyc06g083790.3 Solanum lycopersicum HOM05D004007 ORTHO05D005127 5.5e-205 717.6 420 86.7
Sopen06g035200 Solanum pennellii HOM05D004007 ORTHO05D005127 5.5e-205 717.6 420 86.7
TWI18G0319 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 5.5e-205 717.6 422 86.3
Potri.014G195700 Populus trichocarpa HOM05D004007 ORTHO05D005127 7.2e-205 717.2 422 87.4
Duzib138G0603 Durio zibethinus HOM05D004007 ORTHO05D005127 1.2e-204 716.5 422 87.0
MD05G1193100 Malus domestica HOM05D004007 ORTHO05D005127 1.6e-204 716.1 419 86.9
Oeu035732.1 Olea europaea HOM05D004007 ORTHO05D005127 2.1e-204 715.7 422 86.5
Gohir.D07G156900 Gossypium hirsutum HOM05D004007 ORTHO05D005127 2.8e-204 715.3 431 85.4
Ciclev10020300m.g Citrus clementina HOM05D004007 ORTHO05D005127 3.6e-204 714.9 422 85.5
Duzib211G0126 Durio zibethinus HOM05D004007 ORTHO05D005127 3.6e-204 714.9 422 86.3
MD10G1179600 Malus domestica HOM05D004007 ORTHO05D005127 3.6e-204 714.9 419 86.9
GSVIVG01028373001 Vitis vinifera HOM05D004007 ORTHO05D005127 3.6e-204 714.9 418 86.8
Actinidia09529 Actinidia chinensis HOM05D004007 ORTHO05D005127 4.7e-204 714.5 418 87.1
FvH4_2g20990 Fragaria vesca HOM05D004007 ORTHO05D005127 4.7e-204 714.5 422 86.0
Potri.002G259600 Populus trichocarpa HOM05D004007 ORTHO05D005127 6.1e-204 714.1 422 86.5
RcHm_v2.0_Chr6g0287371 Rosa chinensis HOM05D004007 ORTHO05D005127 6.1e-204 714.1 422 86.0
ClCG06G001530 Citrullus lanatus HOM05D004007 ORTHO05D005127 8.0e-204 713.8 418 86.8
MSTRG.18338 Avicennia marina HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 85.8
Ca_09660_v3 Cicer arietinum L. HOM05D004007 ORTHO05D005127 1.8e-203 712.6 418 86.8
MELO3C022382.2 Cucumis melo HOM05D004007 ORTHO05D005127 1.8e-203 712.6 418 86.6
FAN15G2391 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.8e-203 712.6 422 85.5
TWI12G1332 Tripterygium wilfordii HOM05D004007 ORTHO05D005127 2.3e-203 712.2 422 85.1
CsaV3_6G007490 Cucumis sativus L. HOM05D004007 ORTHO05D005127 3.0e-203 711.8 418 86.6
Gorai.001G180000 Gossypium raimondii HOM05D004007 ORTHO05D005127 3.0e-203 711.8 422 86.3
Cc01_g18040 Coffea canephora HOM05D004007 ORTHO05D005127 4.0e-203 711.4 418 86.8
Gohir.A07G150600 Gossypium hirsutum HOM05D004007 ORTHO05D005127 4.0e-203 711.4 418 86.6
Sabra14G0145900 Salix brachista HOM05D004007 ORTHO05D005127 4.0e-203 711.4 422 86.7
Hma1.2p1_0273F.1_g109400 Hydrangea macrophylla HOM05D004007 ORTHO05D005127 5.2e-203 711.1 418 87.1
CAN.G771.36 Capsicum annuum HOM05D004007 ORTHO05D005127 8.8e-203 710.3 420 86.0
Lsat_1_v5_gn_8_92300 Lactuca sativa HOM05D004007 ORTHO05D005127 8.8e-203 710.3 421 86.0
Psat6g062440 Pisum sativum HOM05D004007 ORTHO05D005127 1.2e-202 709.9 418 85.6
arahy.Tifrunner.gnm1.ann1.ZVPG3A Arachis hypogaea HOM05D004007 ORTHO05D005127 1.5e-202 709.5 418 86.4
HanXRQChr04g0111281 Helianthus annuus HOM05D004007 ORTHO05D005127 1.5e-202 709.5 419 86.6
Manes.12G034800 Manihot esculenta HOM05D004007 ORTHO05D005127 1.5e-202 709.5 422 86.0
PSO832G3765 Papaver somniferum HOM05D004007 ORTHO05D005127 2.6e-202 708.8 422 86.5
Lj1A71T65 Lonicera japonica HOM05D004007 ORTHO05D005127 4.4e-202 708.0 422 85.5
DCAR_018503 Daucus carota HOM05D004007 ORTHO05D005127 5.7e-202 707.6 422 85.1
HanXRQChr10g0280751 Helianthus annuus HOM05D004007 ORTHO05D005127 5.7e-202 707.6 417 86.3
Sed0019801 Sechium edule HOM05D004007 ORTHO05D005127 5.7e-202 707.6 418 86.4
Lalb_Chr06g0170611 Lupinus albus HOM05D004007 ORTHO05D005127 7.5e-202 707.2 418 85.4
Migut.N02218 Erythranthe guttata HOM05D004007 ORTHO05D005127 1.3e-201 706.4 422 85.3
Lalb_Chr02g0152651 Lupinus albus HOM05D004007 ORTHO05D005127 1.3e-201 706.4 418 85.4
Nn3g19723 Nelumbo nucifera HOM05D004007 ORTHO05D005127 1.3e-201 706.4 421 85.7
PSO210G2341 Papaver somniferum HOM05D004007 ORTHO05D005127 1.3e-201 706.4 422 86.3
Lj5g0009759 Lotus japonicus HOM05D004007 ORTHO05D005127 1.7e-201 706.1 419 86.2
PGR031G0590 Punica granatum HOM05D004007 ORTHO05D005127 1.7e-201 706.1 422 85.8
vmacro02694 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 2.8e-201 705.3 418 87.3
SGA_v2.0_scaffold138G35202 Striga asiatica HOM05D004007 ORTHO05D005127 3.7e-201 704.9 422 85.1
unitig_22.g5450 Utricularia gibba HOM05D004007 ORTHO05D005127 3.7e-201 704.9 422 85.3
FAN24G2352 Fragaria x ananassa HOM05D004007 ORTHO05D005127 4.9e-201 704.5 437 83.1
Haze_24666 Corylus avellana HOM05D004007 ORTHO05D005127 6.3e-201 704.1 470 79.6
Haze_24671 Corylus avellana HOM05D004007 ORTHO05D005127 6.3e-201 704.1 470 79.6
Phvul.007G190800 Phaseolus vulgaris HOM05D004007 ORTHO05D005127 6.3e-201 704.1 418 85.4
Medtr1g069645 Medicago truncatula HOM05D004007 ORTHO05D005127 8.3e-201 703.7 418 85.2
Glyma.13G125400 Glycine max HOM05D004007 ORTHO05D005127 1.1e-200 703.4 418 85.9
MSTRG.21476 Avicennia marina HOM05D004007 ORTHO05D005127 1.8e-200 702.6 422 84.8
Nitab4.5_0000917g0090 Nicotiana tabacum HOM05D004007 ORTHO05D005127 1.8e-200 702.6 437 82.8
VMungo0720G0501 Vigna mungo HOM05D004007 ORTHO05D005127 1.8e-200 702.6 418 85.2
Eucgr.H00143 Eucalyptus grandis HOM05D004007 ORTHO05D005127 4.1e-200 701.4 419 86.2
Sabra02G0197500 Salix brachista HOM05D004007 ORTHO05D005127 5.4e-200 701.0 453 80.8
Glyma.10G039000 Glycine max HOM05D004007 ORTHO05D005127 1.6e-199 699.5 418 85.2
Os02g0621700 Oryza sativa ssp. japonica HOM05D004007 ORTHO05D005127 1.6e-199 699.5 418 84.4
SalBow6G2566 Salvia bowleyana HOM05D004007 ORTHO05D005127 1.6e-199 699.5 420 85.2
FAN27G2583 Fragaria x ananassa HOM05D004007 ORTHO05D005127 2.7e-199 698.7 431 84.0
HPP92_008549 Vanilla planifolia HOM05D004007 ORTHO05D005127 3.5e-199 698.4 422 84.4
Rhsim01G0261700 Rhododendron simsii HOM05D004007 ORTHO05D005127 5.9e-199 697.6 442 82.8
Migut.D00454 Erythranthe guttata HOM05D004007 ORTHO05D005127 3.8e-198 694.9 422 84.1
Zm00001eb247500 Zea mays HOM05D004007 ORTHO05D005127 3.8e-198 694.9 418 84.7
Peaxi162Scf00415g00213 Petunia axillaris HOM05D004007 ORTHO05D005127 5.0e-198 694.5 430 83.3
TPR.G5690 Trifolium pratense HOM05D004007 ORTHO05D005127 6.6e-198 694.1 415 84.3
Zm00001eb185030 Zea mays HOM05D004007 ORTHO05D005127 8.6e-198 693.7 418 84.2
Peaxi162Scf00013g01239 Petunia axillaris HOM05D004007 ORTHO05D005127 1.5e-197 693.0 422 84.4
Hund04389 Selenicereus undatus HOM05D004007 ORTHO05D005127 7.3e-197 690.6 418 83.0
Lsat_1_v5_gn_9_10741 Lactuca sativa HOM05D004007 ORTHO05D005127 1.6e-196 689.5 422 84.6
CSS0014309 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 2.8e-196 688.7 419 84.5
CDE05G0056 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 4.7e-196 688.0 422 82.9
Rhsim13G0038000 Rhododendron simsii HOM05D004007 ORTHO05D005127 3.0e-195 685.3 447 81.4
EL10Ac6g15333 Beta vulgaris HOM05D004007 ORTHO05D005127 2.2e-193 679.1 422 81.5
CDE02G1941 Ceratophyllum demersum HOM05D004007 ORTHO05D005127 2.9e-193 678.7 416 83.9
AUR62017860 Chenopodium quinoa HOM05D004007 ORTHO05D005127 8.3e-193 677.2 424 82.3
arahy.Tifrunner.gnm1.ann1.TE5CG8 Arachis hypogaea HOM05D004007 ORTHO05D005127 5.0e-190 667.9 501 72.3
FAN20G1240 Fragaria x ananassa HOM05D004007 ORTHO05D005127 1.4e-187 659.8 472 75.6
SalBow4G2771 Salvia bowleyana HOM05D004007 ORTHO05D005127 2.3e-187 659.1 422 81.3
Nitab4.5_0003295g0070 Nicotiana tabacum HOM05D004007 ORTHO05D005127 5.8e-186 654.4 412 82.0
SEGI_32315 Sequoiadendron giganteum HOM05D004007 ORTHO05D005127 4.9e-185 651.4 423 78.7
Nitab4.5_0001919g0010 Nicotiana tabacum HOM05D004007 ORTHO05D005127 8.3e-185 650.6 420 80.5
Dinv16374 Davidia involucrata HOM05D004007 ORTHO05D005127 3.5e-183 645.2 374 88.0
MBI07_g32831_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.4e-179 633.3 416 80.5
AUR62003546 Chenopodium quinoa HOM05D004007 ORTHO05D005127 2.3e-179 632.5 389 83.3
Sc16g0004880 Simmondsia chinensis HOM05D004007 ORTHO05D005127 2.2e-177 625.9 377 83.6
SMO201G0240 Selaginella moellendorffii HOM05D004007 ORTHO05D005127 4.1e-176 621.7 405 78.3
Nn1g02862 Nelumbo nucifera HOM05D004007 ORTHO05D005127 4.6e-175 618.2 363 86.0
Mapoly0005s0186 Marchantia polymorpha HOM05D004007 ORTHO05D005127 1.0e-174 617.1 398 78.1
ATR0736G150 Amborella trichopoda HOM05D004007 ORTHO05D005127 2.3e-174 615.9 372 83.1
Pp3c20_5640 Physcomitrium patens HOM05D004007 ORTHO05D005127 1.6e-172 609.8 416 74.5
Oeu055792.1 Olea europaea HOM05D004007 ORTHO05D005127 2.0e-170 602.8 418 75.8
CBR_g26489 Chara braunii HOM05D004007 ORTHO05D005127 1.4e-163 580.1 400 72.0
Dinv34652 Davidia involucrata HOM05D004007 ORTHO05D005127 5.4e-160 568.2 331 86.4
MBI10_g27626_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 3.0e-158 562.4 408 73.3
Actinidia25803 Actinidia chinensis HOM05D004007 ORTHO05D005127 2.7e-151 539.3 309 89.0
Cre17.g703700 Chlamydomonas reinhardtii HOM05D004007 ORTHO05D005127 1.8e-150 536.6 415 65.8
PRCOL_00006943 Prasinoderma coloniale HOM05D004007 ORTHO05D005127 5.1e-150 535.0 396 67.7
MCO01G516 Micromonas commoda HOM05D004007 ORTHO05D005127 2.2e-145 519.6 398 67.1
vmacro14809 Vaccinium macrocarpon HOM05D004007 ORTHO05D005127 6.0e-135 485.0 458 61.6
ECA236G0129 Erigeron canadensis HOM05D004007 ORTHO05D005127 7.4e-133 478.0 278 89.2
MBI07_g31081_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.1e-127 459.9 284 81.3
QL09p040223 Quercus lobata HOM05D004007 ORTHO05D005127 2.7e-127 459.5 392 67.1
Ah.03g147720 Amaranthus hybridus HOM05D004007 ORTHO05D005127 1.9e-120 436.8 260 85.4
MBI10_g13790_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 2.9e-113 412.9 243 87.7
Cpa.g.sc165.35 Carica papaya HOM05D004007 ORTHO05D005127 1.3e-105 387.5 236 80.9
TAR365G0842 Trochodendron aralioides HOM05D004007 ORTHO05D005127 8.2e-100 368.2 222 82.4
Lalb_Chr21g0314021 Lupinus albus HOM05D004007 ORTHO05D005127 2.1e-95 353.6 205 86.3
MBI10_g27857_MAGBIO Magnolia biondii HOM05D004007 ORTHO05D005127 1.3e-92 344.4 244 72.1
Sed0026875 Sechium edule HOM05D004007 ORTHO05D005127 7.5e-85 318.5 287 63.1
Haze_27401 Corylus avellana HOM05D004007 ORTHO05D005127 3.9e-73 279.6 293 51.5
Psat3g074720 Pisum sativum HOM05D004007 ORTHO05D005127 2.1e-66 257.3 207 64.7
Psat7g041920 Pisum sativum HOM05D004007 ORTHO05D005127 3.1e-62 243.4 147 81.0
Haze_26747 Corylus avellana HOM05D004007 ORTHO05D005127 2.2e-60 237.3 189 61.4
Actinidia30141 Actinidia chinensis HOM05D004007 ORTHO05D002753 7.8e-50 202.2 194 62.4
Zm00001eb277730 Zea mays HOM05D004007 ORTHO05D005127 1.0e-49 201.8 133 72.9
TAR365G0472 Trochodendron aralioides HOM05D004007 ORTHO05D022233 8.4e-44 182.2 114 86.0
Zm00001eb283930 Zea mays HOM05D004007 ORTHO05D005127 7.1e-43 179.1 119 71.4
Aqoxy7G03385 Aquilegia oxysepala HOM05D004007 ORTHO05D005127 1.3e-39 168.3 161 60.2
Cfa021785 Carpinus fangiana HOM05D001982 ORTHO05D003938 7.6e-37 159.1 288 36.1
Dinv08643 Davidia involucrata HOM05D004007 ORTHO05D005127 9.9e-37 158.7 106 76.4
Lj2C1145T6 Lonicera japonica HOM05D004007 ORTHO05D022233 1.6e-34 151.4 157 58.6
Lj2C1146T3 Lonicera japonica HOM05D004007 ORTHO05D022233 2.1e-34 151.0 157 58.0
CSS0040446 Camellia sinensis var. sinensis HOM05D004007 ORTHO05D005127 1.7e-28 131.3 80 82.5
Haze_26746 Corylus avellana HOM05D004007 ORTHO05D005127 1.2e-26 125.2 179 39.7
Lj2A1145G31 Lonicera japonica HOM05D004007 ORTHO05D005127 2.0e-21 107.8 149 45.0
CiPaw.03G130300 Carya illinoinensis HOM05D004007 ORTHO05D005127 4.5e-21 106.7 69 76.8
HanXRQChr10g0293611 Helianthus annuus HOM05D004007 ORTHO05D219627 2.4e-14 84.3 96 53.1
Cpa.g.sc165.34 Carica papaya HOM05D004007 ORTHO05D022233 1.5e-13 81.6 50 88.0
FvH4_2g21030 Fragaria vesca HOM05D004007 ORTHO05D022233 2.6e-13 80.9 53 79.2
Lalb_Chr21g0314011 Lupinus albus HOM05D004007 ORTHO05D022233 4.2e-11 73.6 40 92.5
arahy.Tifrunner.gnm1.ann1.SHHZ9W Arachis hypogaea HOM05D002061 ORTHO05D002849 6.1e-10 69.7 415 25.1
TAR636G1356 Trochodendron aralioides HOM05D002574 ORTHO05D002797 3.9e-09 67.0 59 54.2
Cre05.g241850 Chlamydomonas reinhardtii HOM05D002061 ORTHO05D002849 8.8e-09 65.9 373 25.5
Glyma.18G157500 Glycine max HOM05D004007 ORTHO05D005127 2.0e-08 64.7 37 78.4
EL10Ac1g01458 Beta vulgaris HOM05D006505 ORTHO05D008086 5.7e-08 63.2 112 34.8
EL10Ac7g17956 Beta vulgaris HOM05D006505 ORTHO05D008086 1.3e-07 62.0 110 34.5
arahy.Tifrunner.gnm1.ann1.DG289Q Arachis hypogaea HOM05D000064 ORTHO05D004075 5.3e-06 56.6 89 39.3
arahy.Tifrunner.gnm1.ann1.WB2JVN Arachis hypogaea HOM05D002038 ORTHO05D002165 5.3e-06 56.6 89 39.3


User provided reference genes

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