Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p48400 Brassica napus HOM05D001747 ORTHO05D001696 4.6e-25 117.1 59 100.0
BraA06t27708Z Brassica rapa HOM05D001747 ORTHO05D001696 1.4e-16 89.0 65 76.9
BcaB04g18942 Brassica carinata HOM05D001747 ORTHO05D001696 1.1e-10 69.3 34 94.1
BcaC01g03764 Brassica carinata HOM05D001747 ORTHO05D001696 1.1e-10 69.3 34 94.1
BolC3t17163H Brassica oleracea HOM05D001747 ORTHO05D001696 1.1e-10 69.3 34 94.1
A03p40190 Brassica napus HOM05D001747 ORTHO05D001696 1.4e-10 68.9 34 94.1
BraA03t13169Z Brassica rapa HOM05D001747 ORTHO05D001696 1.4e-10 68.9 34 94.1
AL3G30520 Arabidopsis lyrata HOM05D001747 ORTHO05D001696 2.5e-10 68.2 34 91.2
AT3G17440 Arabidopsis thaliana HOM05D001747 ORTHO05D001696 2.5e-10 68.2 34 91.2
Carub.0003s1716 Capsella rubella HOM05D001747 ORTHO05D001696 2.5e-10 68.2 34 91.2
CARHR092760 Cardamine hirsuta HOM05D001747 ORTHO05D001696 2.5e-10 68.2 34 91.2
Sp3g15610 Schrenkiella parvula HOM05D001747 ORTHO05D001696 2.5e-10 68.2 34 91.2
A05p32340 Brassica napus HOM05D001747 ORTHO05D001696 3.2e-10 67.8 34 91.2
BraA05t22062Z Brassica rapa HOM05D001747 ORTHO05D001696 3.2e-10 67.8 34 91.2
Aa31LG8G4390 Aethionema arabicum HOM05D001747 ORTHO05D001696 5.5e-10 67.0 34 88.2
BcaB04g20842 Brassica carinata HOM05D001747 ORTHO05D001696 5.5e-10 67.0 34 91.2
C03p48810 Brassica napus HOM05D001747 ORTHO05D001696 7.2e-10 66.6 34 91.2
BcaC09g48701 Brassica carinata HOM05D001747 ORTHO05D001696 9.4e-10 66.2 34 88.2
A01p36910 Brassica napus HOM05D001747 ORTHO05D001696 9.4e-10 66.2 34 88.2
C01p46800 Brassica napus HOM05D001747 ORTHO05D001696 9.4e-10 66.2 34 88.2
BolC1t04653H Brassica oleracea HOM05D001747 ORTHO05D001696 9.4e-10 66.2 34 88.2
BraA01t03750Z Brassica rapa HOM05D001747 ORTHO05D001696 9.4e-10 66.2 34 88.2
BcaB06g25843 Brassica carinata HOM05D001747 ORTHO05D001696 1.2e-09 65.9 34 88.2
BcaB06g25845 Brassica carinata HOM05D001747 ORTHO05D001696 1.2e-09 65.9 34 88.2
BcaC05g28790 Brassica carinata HOM05D001747 ORTHO05D001696 1.2e-09 65.9 34 88.2
C05p48990 Brassica napus HOM05D001747 ORTHO05D001696 1.2e-09 65.9 34 88.2
BolC5t33639H Brassica oleracea HOM05D001747 ORTHO05D001696 1.2e-09 65.9 34 88.2
Carub.0001s3738 Capsella rubella HOM05D001747 ORTHO05D001696 1.2e-09 65.9 34 88.2
AL1G54830 Arabidopsis lyrata HOM05D001747 ORTHO05D001696 1.6e-09 65.5 34 88.2
AT1G48240 Arabidopsis thaliana HOM05D001747 ORTHO05D001696 1.6e-09 65.5 34 88.2
THA.LOC104802621 Tarenaya hassleriana HOM05D001747 ORTHO05D001696 2.1e-09 65.1 34 85.3
MD13G1140900 Malus domestica HOM05D001747 ORTHO05D001696 2.7e-09 64.7 34 88.2
MD16G1137000 Malus domestica HOM05D001747 ORTHO05D001696 2.7e-09 64.7 34 88.2
Prupe.1G105900 Prunus persica HOM05D001747 ORTHO05D001696 2.7e-09 64.7 34 88.2
RcHm_v2.0_Chr4g0427401 Rosa chinensis HOM05D001747 ORTHO05D001696 2.7e-09 64.7 34 88.2
arahy.Tifrunner.gnm1.ann1.0G05EQ Arachis hypogaea HOM05D001747 ORTHO05D001696 3.6e-09 64.3 34 82.4
arahy.Tifrunner.gnm1.ann1.SRQ5BD Arachis hypogaea HOM05D001747 ORTHO05D001696 3.6e-09 64.3 34 82.4
CARHR037870 Cardamine hirsuta HOM05D001747 ORTHO05D001696 3.6e-09 64.3 34 88.2
Ca_02361_v3 Cicer arietinum L. HOM05D001747 ORTHO05D001696 3.6e-09 64.3 34 85.3
Thhalv10021318m.g Eutrema salsugineum HOM05D001747 ORTHO05D001696 4.7e-09 63.9 34 85.3
Lj4g0012719 Lotus japonicus HOM05D001747 ORTHO05D001696 4.7e-09 63.9 34 85.3
Cpa.g.sc146.28 Carica papaya HOM05D001747 ORTHO05D001696 6.1e-09 63.5 34 85.3
FvH4_4g21470 Fragaria vesca HOM05D001747 ORTHO05D001696 6.1e-09 63.5 34 85.3
FAN12G0745 Fragaria x ananassa HOM05D001747 ORTHO05D001696 6.1e-09 63.5 34 85.3
Cfa015725 Carpinus fangiana HOM05D001747 ORTHO05D001696 7.9e-09 63.2 34 85.3
CiPaw.02G069600 Carya illinoinensis HOM05D001747 ORTHO05D001696 7.9e-09 63.2 34 85.3
Lalb_Chr07g0181741 Lupinus albus HOM05D001747 ORTHO05D001696 7.9e-09 63.2 34 85.3
Glyma.13G119900 Glycine max HOM05D001747 ORTHO05D001696 1.4e-08 62.4 34 85.3
Glyma.17G040400 Glycine max HOM05D001747 ORTHO05D001696 1.4e-08 62.4 34 85.3
Phvul.003G121300 Phaseolus vulgaris HOM05D001747 ORTHO05D001696 1.4e-08 62.4 34 85.3
QL06p014144 Quercus lobata HOM05D001747 ORTHO05D001696 1.4e-08 62.4 34 82.4
Haze_00773 Corylus avellana HOM05D001747 ORTHO05D001696 1.8e-08 62.0 34 82.4
VMungo1215G2466 Vigna mungo HOM05D001747 ORTHO05D001696 1.8e-08 62.0 34 85.3
EL10Ac3g06261 Beta vulgaris HOM05D001747 ORTHO05D001696 2.3e-08 61.6 34 79.4
AUR62002559 Chenopodium quinoa HOM05D001747 ORTHO05D001696 2.3e-08 61.6 34 79.4
Sp1g35200 Schrenkiella parvula HOM05D001747 ORTHO05D001696 2.3e-08 61.6 34 85.3
Hund12252 Selenicereus undatus HOM05D001747 ORTHO05D001696 2.3e-08 61.6 34 79.4
Sc13g0007720 Simmondsia chinensis HOM05D001747 ORTHO05D001696 2.3e-08 61.6 34 82.4
TPR.G12623 Trifolium pratense HOM05D001747 ORTHO05D001696 2.3e-08 61.6 34 88.2
TPR.G31208 Trifolium pratense HOM05D001747 ORTHO05D001696 2.3e-08 61.6 34 79.4
Sed0024737 Sechium edule HOM05D001747 ORTHO05D001696 3.0e-08 61.2 34 82.4
CiPaw.01G129800 Carya illinoinensis HOM05D001747 ORTHO05D001696 3.9e-08 60.8 34 79.4
Ca_21379_v3 Cicer arietinum L. HOM05D001747 ORTHO05D001696 3.9e-08 60.8 34 85.3
Ca_30147_v3 Cicer arietinum L. HOM05D001747 ORTHO05D001696 3.9e-08 60.8 34 85.3
DCAR_026949 Daucus carota HOM05D001747 ORTHO05D001696 3.9e-08 60.8 32 87.5
Medtr4g123910 Medicago truncatula HOM05D001747 ORTHO05D001696 3.9e-08 60.8 34 85.3
Psat0s2012g0160 Pisum sativum HOM05D001747 ORTHO05D001696 3.9e-08 60.8 34 85.3
Atru.chr4.3142 Acer truncatum HOM05D001747 ORTHO05D001696 5.1e-08 60.5 34 82.4
Lalb_Chr08g0233011 Lupinus albus HOM05D001747 ORTHO05D001696 6.7e-08 60.1 34 82.4
CANSAT78G1207 Cannabis sativa HOM05D001747 ORTHO05D001696 8.8e-08 59.7 34 82.4
Ciclev10005631m.g Citrus clementina HOM05D001747 ORTHO05D001696 1.1e-07 59.3 34 79.4
Thhalv10011716m.g Eutrema salsugineum HOM05D001747 ORTHO05D001696 1.1e-07 59.3 34 82.4
GSVIVG01017683001 Vitis vinifera HOM05D001747 ORTHO05D001696 1.1e-07 59.3 34 79.4
ClCG06G004220 Citrullus lanatus HOM05D001747 ORTHO05D001696 1.5e-07 58.9 34 79.4
Lalb_Chr23g0276051 Lupinus albus HOM05D001747 ORTHO05D001696 2.6e-07 58.2 34 79.4
Cc03_g00180 Coffea canephora HOM05D001747 ORTHO05D001696 3.3e-07 57.8 36 80.6
Lj6A700T85 Lonicera japonica HOM05D001747 ORTHO05D001696 3.3e-07 57.8 32 84.4
Lalb_Chr11g0073541 Lupinus albus HOM05D001747 ORTHO05D001696 4.4e-07 57.4 34 76.5
PSO170G5953 Papaver somniferum HOM05D001747 ORTHO05D001696 4.4e-07 57.4 34 82.4
PSO357G0505 Papaver somniferum HOM05D001747 ORTHO05D001696 4.4e-07 57.4 34 82.4
Actinidia18505 Actinidia chinensis HOM05D001747 ORTHO05D001696 5.7e-07 57.0 28 92.9
Aqoxy2G02524 Aquilegia oxysepala HOM05D001747 ORTHO05D001696 5.7e-07 57.0 34 76.5
CSS0004385 Camellia sinensis var. sinensis HOM05D001747 ORTHO05D001696 5.7e-07 57.0 28 92.9
CDE09G0673 Ceratophyllum demersum HOM05D001747 ORTHO05D001696 5.7e-07 57.0 34 79.4
MELO3C021232.2 Cucumis melo HOM05D001747 ORTHO05D001696 5.7e-07 57.0 34 76.5
CsaV3_6G000220 Cucumis sativus L. HOM05D001747 ORTHO05D001696 5.7e-07 57.0 34 76.5
Dinv18025 Davidia involucrata HOM05D001747 ORTHO05D001696 5.7e-07 57.0 28 92.9
Dinv29514 Davidia involucrata HOM05D001747 ORTHO05D001696 5.7e-07 57.0 28 92.9
Eucgr.H04121 Eucalyptus grandis HOM05D001747 ORTHO05D001696 5.7e-07 57.0 34 73.5
PGR004G0827 Punica granatum HOM05D001747 ORTHO05D001696 5.7e-07 57.0 34 73.5
Rhsim04G0248000 Rhododendron simsii HOM05D001747 ORTHO05D001696 5.7e-07 57.0 28 92.9
Lj6g0011501 Lotus japonicus HOM05D001747 ORTHO05D001696 7.4e-07 56.6 32 78.1
Manes.03G211500 Manihot esculenta HOM05D001747 ORTHO05D001696 7.4e-07 56.6 34 73.5
DCAR_023401 Daucus carota HOM05D001747 ORTHO05D001696 9.7e-07 56.2 32 81.2
Duzib151G0196 Durio zibethinus HOM05D001747 ORTHO05D001696 1.3e-06 55.8 28 89.3
Nn3g21905 Nelumbo nucifera HOM05D001747 ORTHO05D001696 1.3e-06 55.8 34 79.4
Psat1g017680 Pisum sativum HOM05D001747 ORTHO05D001696 1.3e-06 55.8 28 85.7
TWI53G0604 Tripterygium wilfordii HOM05D001747 ORTHO05D001696 1.3e-06 55.8 34 73.5
Actinidia02540 Actinidia chinensis HOM05D001747 ORTHO05D001696 1.7e-06 55.5 28 89.3
PSO210G7213 Papaver somniferum HOM05D001747 ORTHO05D001696 1.7e-06 55.5 34 76.5
PSO761G0403 Papaver somniferum HOM05D001747 ORTHO05D001696 1.7e-06 55.5 34 76.5
Nitab4.5_0000895g0240 Nicotiana tabacum HOM05D001747 ORTHO05D001696 2.2e-06 55.1 28 85.7
Nitab4.5_0004665g0070 Nicotiana tabacum HOM05D001747 ORTHO05D001696 2.2e-06 55.1 28 85.7
Peaxi162Scf00668g00311 Petunia axillaris HOM05D001747 ORTHO05D001696 2.2e-06 55.1 28 85.7
Solyc12g098950.2 Solanum lycopersicum HOM05D001747 ORTHO05D001696 2.2e-06 55.1 28 85.7
Sopen12g033700 Solanum pennellii HOM05D001747 ORTHO05D001696 2.2e-06 55.1 28 85.7
PGSC0003DMG400004602 Solanum tuberosum HOM05D001747 ORTHO05D001696 2.2e-06 55.1 28 85.7
Duzib212G0821 Durio zibethinus HOM05D001747 ORTHO05D001696 2.8e-06 54.7 28 85.7
Os03g0369800 Oryza sativa ssp. japonica HOM05D001747 ORTHO05D001696 3.7e-06 54.3 34 73.5
Os07g0637400 Oryza sativa ssp. japonica HOM05D001747 ORTHO05D001696 3.7e-06 54.3 34 73.5
Zm00001eb109980 Zea mays HOM05D001747 ORTHO05D001696 3.7e-06 54.3 34 73.5
CAN.G484.89 Capsicum annuum HOM05D001747 ORTHO05D001696 4.8e-06 53.9 28 82.1
Potri.010G001900 Populus trichocarpa HOM05D001747 ORTHO05D001696 4.8e-06 53.9 33 72.7
CSS0027514 Camellia sinensis var. sinensis HOM05D001747 ORTHO05D001696 6.3e-06 53.5 28 85.7
CDE08G1327 Ceratophyllum demersum HOM05D001747 ORTHO05D001696 6.3e-06 53.5 34 76.5
Medtr2g045960 Medicago truncatula HOM05D001747 ORTHO05D001696 6.3e-06 53.5 34 70.6
TAR365G0418 Trochodendron aralioides HOM05D001747 ORTHO05D001696 6.3e-06 53.5 34 73.5
Actinidia01061 Actinidia chinensis HOM05D001747 ORTHO05D001696 8.2e-06 53.1 28 85.7
Gohir.A02G058100 Gossypium hirsutum HOM05D001747 ORTHO05D001696 8.2e-06 53.1 28 85.7
Gohir.D02G063900 Gossypium hirsutum HOM05D001747 ORTHO05D001696 8.2e-06 53.1 28 85.7
Gorai.005G071800 Gossypium raimondii HOM05D001747 ORTHO05D001696 8.2e-06 53.1 28 85.7
Thecc.04G312400 Theobroma cacao HOM05D001747 ORTHO05D001696 8.2e-06 53.1 28 85.7
Zm00001eb017970 Zea mays HOM05D001747 ORTHO05D001696 8.2e-06 53.1 34 73.5


User provided reference genes

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