Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p47780 Brassica napus HOM05D005259 ORTHO05D006402 0.0e+00 1402.9 721 100.0
BraA06t27646Z Brassica rapa HOM05D005259 ORTHO05D006402 0.0e+00 1371.3 721 98.2
BcaC06g34639 Brassica carinata HOM05D005259 ORTHO05D006402 0.0e+00 1128.6 739 84.6
C07p26220 Brassica napus HOM05D005259 ORTHO05D006402 0.0e+00 1107.8 719 85.0
BolC7t43150H Brassica oleracea HOM05D005259 ORTHO05D006402 0.0e+00 1107.8 719 85.0
BcaC06g31686 Brassica carinata HOM05D005259 ORTHO05D006402 3.0e-275 951.8 774 70.4
Sp2g08420 Schrenkiella parvula HOM05D005259 ORTHO05D006402 2.0e-271 939.1 856 65.5
Thhalv10003150m.g Eutrema salsugineum HOM05D005259 ORTHO05D006402 3.0e-267 925.2 807 67.0
AT5G43630 Arabidopsis thaliana HOM05D005259 ORTHO05D006402 1.9e-237 826.2 819 61.4
Carub.0008s0502 Capsella rubella HOM05D005259 ORTHO05D006402 1.2e-212 743.8 802 57.9
BcaB07g30565 Brassica carinata HOM05D005259 ORTHO05D006402 2.3e-206 723.0 799 57.9
Aa31LG5G3600 Aethionema arabicum HOM05D005259 ORTHO05D006402 3.4e-202 709.1 896 52.1
CARHR006260 Cardamine hirsuta HOM05D005259 ORTHO05D006402 1.5e-146 524.2 445 66.7
COL.COLO4_15792 Corchorus olitorius HOM05D005259 ORTHO05D006402 7.0e-91 339.3 1019 31.4
Thecc.04G246200 Theobroma cacao HOM05D005259 ORTHO05D006402 1.4e-86 325.1 1062 29.9
Ciclev10004215m.g Citrus clementina HOM05D005259 ORTHO05D006402 2.3e-86 324.3 1071 31.7
Atru.chr4.2229 Acer truncatum HOM05D005259 ORTHO05D006402 1.3e-84 318.5 1055 30.4
Duzib151G0402 Durio zibethinus HOM05D005259 ORTHO05D006402 1.3e-84 318.5 736 35.1
Manes.15G037000 Manihot esculenta HOM05D005259 ORTHO05D006402 3.7e-84 317.0 1026 30.8
Manes.03G168800 Manihot esculenta HOM05D005259 ORTHO05D006402 8.3e-84 315.8 1029 30.6
Nitab4.5_0004798g0010 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.4e-83 315.1 784 32.5
Cpa.g.sc58.48 Carica papaya HOM05D005259 ORTHO05D006402 7.0e-83 312.8 1029 30.8
Medtr5g007040 Medicago truncatula HOM05D005259 ORTHO05D006402 7.8e-82 309.3 863 30.9
CSS0027429 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 1.7e-81 308.1 1013 30.0
CSS0043582 Camellia sinensis var. sinensis HOM05D005259 ORTHO05D006402 2.3e-81 307.8 1013 30.0
Rhsim04G0190300 Rhododendron simsii HOM05D005259 ORTHO05D006402 3.9e-81 307.0 863 32.9
Duzib212G1015 Durio zibethinus HOM05D005259 ORTHO05D006402 6.6e-81 306.2 907 31.9
Potri.008G162500 Populus trichocarpa HOM05D005259 ORTHO05D006402 6.6e-81 306.2 1045 29.6
Sabra10G0032100 Salix brachista HOM05D005259 ORTHO05D006402 3.3e-80 303.9 936 31.7
Glyma.11G008300 Glycine max HOM05D005259 ORTHO05D006402 9.5e-80 302.4 997 28.8
Hma1.2p1_0650F.1_g195420 Hydrangea macrophylla HOM05D005259 ORTHO05D006402 1.6e-79 301.6 851 33.0
Duzib052G0218 Durio zibethinus HOM05D005259 ORTHO05D006402 2.1e-79 301.2 1041 29.3
Cc03_g04860 Coffea canephora HOM05D005259 ORTHO05D006402 2.3e-78 297.7 752 34.7
Phvul.002G042000 Phaseolus vulgaris HOM05D005259 ORTHO05D006402 3.1e-78 297.4 673 32.8
Glyma.01G234600 Glycine max HOM05D005259 ORTHO05D006402 1.5e-77 295.0 693 32.8
Prupe.1G030800 Prunus persica HOM05D005259 ORTHO05D006402 1.5e-77 295.0 868 31.6
FvH4_4g02690 Fragaria vesca HOM05D005259 ORTHO05D006402 2.6e-77 294.3 735 32.5
Gohir.A09G223300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 7.5e-77 292.7 864 31.8
Cfa008379 Carpinus fangiana HOM05D005259 ORTHO05D006402 1.7e-76 291.6 999 29.8
TAR362G0225 Trochodendron aralioides HOM05D005259 ORTHO05D006402 1.7e-76 291.6 888 30.1
arahy.Tifrunner.gnm1.ann1.SM0BS0 Arachis hypogaea HOM05D005259 ORTHO05D006402 2.2e-76 291.2 988 28.9
Psat2g189680 Pisum sativum HOM05D005259 ORTHO05D006402 2.2e-76 291.2 859 30.3
TAR633G1135 Trochodendron aralioides HOM05D005259 ORTHO05D006402 2.2e-76 291.2 778 32.3
CiPaw.01G190300 Carya illinoinensis HOM05D005259 ORTHO05D001287 4.9e-76 290.0 985 29.9
RcHm_v2.0_Chr4g0390511 Rosa chinensis HOM05D005259 ORTHO05D006402 9.2e-75 285.8 880 30.2
vmacro08412 Vaccinium macrocarpon HOM05D005259 ORTHO05D006402 1.6e-74 285.0 878 31.5
Sabra08G0123900 Salix brachista HOM05D005259 ORTHO05D006402 2.0e-74 284.6 856 30.6
Potri.010G076700 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.7e-74 284.3 1011 28.9
VMungo1215G2763 Vigna mungo HOM05D005259 ORTHO05D006402 2.7e-74 284.3 1006 27.8
Gorai.006G246800 Gossypium raimondii HOM05D005259 ORTHO05D006402 6.0e-74 283.1 865 31.2
Actinidia04478 Actinidia chinensis HOM05D005259 ORTHO05D002253 1.0e-73 282.3 960 29.7
Nitab4.5_0000525g0240 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.7e-73 281.6 881 30.0
FAN12G0451 Fragaria x ananassa HOM05D005259 ORTHO05D006402 3.9e-73 280.4 853 30.4
Eucgr.H03158 Eucalyptus grandis HOM05D005259 ORTHO05D006402 1.5e-72 278.5 730 33.0
Gohir.D09G225300 Gossypium hirsutum HOM05D005259 ORTHO05D006402 2.5e-72 277.7 865 31.1
PGSC0003DMG400001126 Solanum tuberosum HOM05D005259 ORTHO05D006402 3.3e-72 277.3 960 29.5
FAN22G1888 Fragaria x ananassa HOM05D005259 ORTHO05D006402 1.2e-71 275.4 853 30.0
CiPaw.02G116300 Carya illinoinensis HOM05D005259 ORTHO05D006402 3.1e-70 270.8 998 28.4
ClCG05G004600 Citrullus lanatus HOM05D005259 ORTHO05D006402 5.2e-70 270.0 1037 29.8
Sc13g0005040 Simmondsia chinensis HOM05D005259 ORTHO05D006402 2.0e-69 268.1 748 32.1
CsaV3_3G012580 Cucumis sativus L. HOM05D005259 ORTHO05D006402 2.6e-69 267.7 990 30.0
Sed0017180 Sechium edule HOM05D005259 ORTHO05D006402 2.6e-69 267.7 960 29.1
FAN17G1158 Fragaria x ananassa HOM05D005259 ORTHO05D006402 4.4e-69 266.9 867 30.0
TWI73G0531 Tripterygium wilfordii HOM05D005259 ORTHO05D006402 5.8e-69 266.5 1020 29.1
GSVIVG01018119001 Vitis vinifera HOM05D005259 ORTHO05D006402 1.7e-68 265.0 690 33.8
Sopen09g032310 Solanum pennellii HOM05D005259 ORTHO05D006402 2.2e-68 264.6 960 28.8
CAN.G1007.13 Capsicum annuum HOM05D005259 ORTHO05D006402 1.9e-67 261.5 810 30.9
MELO3C006469.2 Cucumis melo HOM05D005259 ORTHO05D006402 3.2e-67 260.8 1036 29.1
Peaxi162Scf00813g00016 Petunia axillaris HOM05D005259 ORTHO05D006402 7.1e-67 259.6 1022 27.7
QL06p015741 Quercus lobata HOM05D005259 ORTHO05D006402 7.1e-67 259.6 702 31.9
MD16G1208700 Malus domestica HOM05D005259 ORTHO05D006402 4.6e-66 256.9 873 29.3
LjContig00222g0005017 Lotus japonicus HOM05D005259 ORTHO05D006402 4.3e-64 250.4 1037 26.1
MBI04_g07579_MAGBIO Magnolia biondii HOM05D005259 ORTHO05D006402 3.6e-63 247.3 789 30.4
TPR.G37888 Trifolium pratense HOM05D005259 ORTHO05D006402 6.2e-63 246.5 951 27.9
Sed0002321 Sechium edule HOM05D005259 ORTHO05D006402 2.0e-61 241.5 742 30.9
Nn3g19539 Nelumbo nucifera HOM05D005259 ORTHO05D006402 6.4e-60 236.5 867 28.0
MSTRG.9924 Avicennia marina HOM05D005259 ORTHO05D006402 1.4e-59 235.3 804 28.7
PSO210G6035 Papaver somniferum HOM05D005259 ORTHO05D006402 1.9e-59 235.0 878 27.3
THA.LOC104815985 Tarenaya hassleriana HOM05D000856 ORTHO05D001792 7.1e-59 233.0 234 54.7
Actinidia40086 Actinidia chinensis HOM05D005259 ORTHO05D006402 9.2e-59 232.6 801 30.3
CDE07G1991 Ceratophyllum demersum HOM05D000989 ORTHO05D006402 7.8e-58 229.6 668 28.6
Lalb_Chr09g0320051 Lupinus albus HOM05D005259 ORTHO05D006402 1.3e-57 228.8 976 26.7
Nn1g02609 Nelumbo nucifera HOM05D005259 ORTHO05D006402 1.7e-57 228.4 776 28.2
PSO832G3620 Papaver somniferum HOM05D005259 ORTHO05D006402 2.3e-57 228.0 879 27.3
MSTRG.24702 Avicennia marina HOM05D005259 ORTHO05D006402 6.6e-57 226.5 701 31.2
Oeu003588.2 Olea europaea HOM05D005259 ORTHO05D006402 2.1e-55 221.5 895 28.2
Migut.G00437 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.6e-55 220.7 736 31.2
Aqoxy5G00317 Aquilegia oxysepala HOM05D005259 ORTHO05D006402 6.2e-55 219.9 781 28.9
Oeu049793.2 Olea europaea HOM05D005259 ORTHO05D006402 4.0e-54 217.2 1029 25.5
MD13G1207300 Malus domestica HOM05D005259 ORTHO05D006402 9.0e-54 216.1 674 30.4
Dinv29911 Davidia involucrata HOM05D005259 ORTHO05D006402 9.9e-53 212.6 355 36.3
DCAR_002351 Daucus carota HOM05D005259 ORTHO05D006402 2.4e-51 208.0 770 29.9
Ca_24427_v3 Cicer arietinum L. HOM05D005259 ORTHO05D006402 2.7e-50 204.5 765 28.5
Potri.008G162150 Populus trichocarpa HOM05D005259 ORTHO05D006402 2.7e-50 204.5 870 28.0
Nitab4.5_0004798g0040 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.1e-47 194.9 515 30.9
Medtr6g046940 Medicago truncatula HOM05D005259 ORTHO05D006402 1.4e-43 182.2 605 30.6
Lsat_1_v5_gn_5_72841 Lactuca sativa HOM05D005259 ORTHO05D006402 3.2e-43 181.0 726 27.7
Actinidia08443 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.3e-41 174.9 273 39.9
ECA233G4142 Erigeron canadensis HOM05D005259 ORTHO05D006402 3.0e-41 174.5 747 27.3
Migut.N00239 Erythranthe guttata HOM05D005259 ORTHO05D006402 3.8e-36 157.5 779 28.4
SGA_v2.0_scaffold88G27281 Striga asiatica HOM05D005259 ORTHO05D006402 6.4e-36 156.8 320 35.9
ATR0665G554 Amborella trichopoda HOM05D005259 ORTHO05D006402 1.2e-34 152.5 1011 22.7
Dinv44634 Davidia involucrata HOM05D005259 ORTHO05D006402 2.1e-34 151.8 180 46.7
Nitab4.5_0000525g0230 Nicotiana tabacum HOM05D005259 ORTHO05D006402 2.1e-34 151.8 315 34.6
HanXRQChr15g0468851 Helianthus annuus HOM05D005259 ORTHO05D006402 3.0e-33 147.9 546 27.5
Actinidia05464 Actinidia chinensis HOM05D005259 ORTHO05D006402 2.4e-30 138.3 143 50.3
Os01g0775100 Oryza sativa ssp. japonica HOM05D005259 ORTHO05D006402 2.4e-30 138.3 643 26.1
HanXRQChr13g0424471 Helianthus annuus HOM05D005259 ORTHO05D006402 4.2e-27 127.5 140 44.3
Lsat_1_v5_gn_3_123200 Lactuca sativa HOM05D005259 ORTHO05D006402 4.2e-27 127.5 141 46.8
Nitab4.5_0000036g0130 Nicotiana tabacum HOM05D005259 ORTHO05D006402 1.6e-26 125.6 167 41.3
ECA240G1753 Erigeron canadensis HOM05D005259 ORTHO05D006402 1.8e-25 122.1 140 44.3
HanXRQChr03g0092361 Helianthus annuus HOM05D005259 ORTHO05D006402 1.1e-24 119.4 139 43.9
AL8G16650 Arabidopsis lyrata HOM05D005259 ORTHO05D006402 3.7e-23 114.4 227 45.4
THA.LOC104815984 Tarenaya hassleriana HOM05D005259 ORTHO05D006402 3.1e-22 111.3 213 40.8
Lj6A656T71 Lonicera japonica HOM05D005259 ORTHO05D006402 7.6e-21 106.7 101 51.5
Cc00_g33140 Coffea canephora HOM05D005259 ORTHO05D006402 8.5e-20 103.2 120 46.7
RcHm_v2.0_Chr7g0198831 Rosa chinensis HOM05D005259 ORTHO05D006402 8.5e-20 103.2 94 51.1
Solyc09g083390.3 Solanum lycopersicum HOM05D005259 ORTHO05D006402 4.2e-19 100.9 563 27.7
HPP92_018440 Vanilla planifolia HOM05D005259 ORTHO05D006402 1.2e-18 99.4 631 24.9
Zm00001eb151720 Zea mays HOM05D005259 ORTHO05D006402 2.1e-18 98.6 617 25.1
Dinv44635 Davidia involucrata HOM05D005259 ORTHO05D006402 3.6e-18 97.8 384 29.9
SMO111G0058 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 2.3e-17 95.1 125 40.8
SMO205G0008 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 2.3e-17 95.1 127 40.2
SalBow3G4073 Salvia bowleyana HOM05D005259 ORTHO05D006402 7.4e-16 90.1 136 38.2
Actinidia08442 Actinidia chinensis HOM05D005259 ORTHO05D006402 9.7e-16 89.7 470 28.9
SMO276G0057 Selaginella moellendorffii HOM05D007564 ORTHO05D009975 1.7e-15 89.0 118 40.7
TPR.G17184 Trifolium pratense HOM05D005259 ORTHO05D006402 1.4e-14 85.9 58 65.5
Haze_11300 Corylus avellana HOM05D005259 ORTHO05D006402 7.7e-13 80.1 135 43.0
Dinv29910 Davidia involucrata HOM05D005259 ORTHO05D006402 5.0e-12 77.4 252 32.1
Lalb_Chr06g0169311 Lupinus albus HOM05D005259 ORTHO05D006402 1.4e-11 75.9 616 24.8
Glyma.10G185100 Glycine max HOM05D005259 ORTHO05D006402 4.8e-07 60.8 454 24.7
Cc00_g10240 Coffea canephora HOM05D005259 ORTHO05D006402 1.1e-06 59.7 67 43.3
Lalb_Chr02g0150411 Lupinus albus HOM05D005259 ORTHO05D006402 1.8e-06 58.9 519 22.7
VMungo0720G1316 Vigna mungo HOM05D005259 ORTHO05D006402 2.4e-06 58.5 442 25.1
SMO205G0005 Selaginella moellendorffii HOM05D007564 ORTHO05D013712 5.3e-06 57.4 66 47.0


User provided reference genes

Program Settings