Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p40670 Brassica napus HOM05D005111 ORTHO05D006650 7.5e-98 360.5 183 100.0
BraA06t26987Z Brassica rapa HOM05D005111 ORTHO05D006650 7.5e-98 360.5 183 100.0
BcaC06g33750 Brassica carinata HOM05D005111 ORTHO05D006650 1.1e-93 346.7 183 95.1
C07p37330 Brassica napus HOM05D005111 ORTHO05D006650 1.1e-93 346.7 183 95.1
BolC7t44243H Brassica oleracea HOM05D005111 ORTHO05D006650 1.1e-93 346.7 183 95.1
BcaC06g30932 Brassica carinata HOM05D005111 ORTHO05D006650 1.0e-86 323.6 191 86.9
Sp2g17070 Schrenkiella parvula HOM05D005111 ORTHO05D006650 2.1e-84 315.8 182 84.1
Thhalv10005667m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 1.8e-83 312.8 182 83.0
Aa31LG2G4740 Aethionema arabicum HOM05D005111 ORTHO05D006650 5.7e-82 307.8 182 81.9
AL5G17640 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 1.4e-80 303.1 181 79.6
AT5G40190 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 2.9e-78 295.4 182 78.0
AL7G49820 Arabidopsis lyrata HOM05D005111 ORTHO05D006650 2.5e-77 292.4 182 76.4
THA.LOC104823919 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 3.3e-77 292.0 182 78.0
Cfa007459 Carpinus fangiana HOM05D005111 ORTHO05D006650 4.7e-76 288.1 182 75.8
THA.LOC104805409 Tarenaya hassleriana HOM05D005111 ORTHO05D006650 6.1e-76 287.7 180 76.7
Carub.0007s3546 Capsella rubella HOM05D005111 ORTHO05D006650 1.0e-75 287.0 182 75.3
Dinv35035 Davidia involucrata HOM05D005111 ORTHO05D006650 1.4e-75 286.6 182 74.2
CARHR261950 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.8e-75 286.2 182 75.3
AT3G28140 Arabidopsis thaliana HOM05D005111 ORTHO05D006650 6.8e-75 284.3 183 76.0
Hma1.2p1_0697F.1_g204930 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 8.9e-75 283.9 182 73.1
Carub.0005s0666 Capsella rubella HOM05D005111 ORTHO05D006650 2.0e-74 282.7 177 77.4
Lsat_1_v5_gn_8_69941 Lactuca sativa HOM05D005111 ORTHO05D006650 2.0e-74 282.7 182 74.2
Lj7P412T18 Lonicera japonica HOM05D005111 ORTHO05D006650 2.0e-74 282.7 182 74.7
ECA246G3776 Erigeron canadensis HOM05D005111 ORTHO05D006650 2.6e-74 282.3 182 74.2
Haze_14637 Corylus avellana HOM05D005111 ORTHO05D006650 3.4e-74 282.0 178 76.4
Thhalv10027951m.g Eutrema salsugineum HOM05D005111 ORTHO05D006650 3.4e-74 282.0 180 74.4
Dinv33518 Davidia involucrata HOM05D005111 ORTHO05D006650 5.8e-74 281.2 182 74.2
CSS0013590 Camellia sinensis var. sinensis HOM05D005111 ORTHO05D006650 9.8e-74 280.4 182 73.6
FAN09G2278 Fragaria x ananassa HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 74.2
RcHm_v2.0_Chr2g0170641 Rosa chinensis HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 73.6
TWI56G1475 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 1.7e-73 279.6 182 73.1
AUR62032092 Chenopodium quinoa HOM05D005111 ORTHO05D006650 2.2e-73 279.3 182 73.6
DCAR_013972 Daucus carota HOM05D005111 ORTHO05D006650 2.2e-73 279.3 182 73.1
FAN02G1641 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.9e-73 278.9 182 73.6
CiPaw.04G023100 Carya illinoinensis HOM05D005111 ORTHO05D006650 3.7e-73 278.5 182 73.6
FAN05G4920 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.7e-73 278.5 182 73.6
CANSAT64G0323 Cannabis sativa HOM05D005111 ORTHO05D006650 4.9e-73 278.1 182 72.5
Gorai.006G028500 Gossypium raimondii HOM05D005111 ORTHO05D006650 6.4e-73 277.7 182 70.9
HanXRQChr15g0474461 Helianthus annuus HOM05D005111 ORTHO05D006650 6.4e-73 277.7 180 73.3
Prupe.3G280400 Prunus persica HOM05D005111 ORTHO05D006650 6.4e-73 277.7 182 73.6
Manes.15G180000 Manihot esculenta HOM05D005111 ORTHO05D006650 8.3e-73 277.3 182 73.1
GSVIVG01032518001 Vitis vinifera HOM05D005111 ORTHO05D006650 8.3e-73 277.3 182 72.5
BcaC06g30930 Brassica carinata HOM05D005111 ORTHO05D006650 1.1e-72 276.9 183 82.0
Actinidia28460 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-72 276.2 182 72.0
Actinidia36066 Actinidia chinensis HOM05D005111 ORTHO05D006650 1.8e-72 276.2 182 72.0
Gohir.D09G024300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.8e-72 276.2 182 70.9
QL02p077635 Quercus lobata HOM05D005111 ORTHO05D006650 1.8e-72 276.2 182 73.1
Rhsim08G0056700 Rhododendron simsii HOM05D005111 ORTHO05D006650 3.2e-72 275.4 182 71.4
MD17G1038600 Malus domestica HOM05D005111 ORTHO05D006650 4.1e-72 275.0 182 72.5
Manes.17G124400 Manihot esculenta HOM05D005111 ORTHO05D006650 4.1e-72 275.0 182 72.5
TWI36G0044 Tripterygium wilfordii HOM05D005111 ORTHO05D006650 4.1e-72 275.0 182 72.0
FvH4_6g50340 Fragaria vesca HOM05D005111 ORTHO05D006650 3.5e-71 271.9 177 74.6
FAN14G5899 Fragaria x ananassa HOM05D005111 ORTHO05D006650 3.5e-71 271.9 177 74.6
MD09G1037200 Malus domestica HOM05D005111 ORTHO05D006650 3.5e-71 271.9 182 71.4
PGR083G2413 Punica granatum HOM05D005111 ORTHO05D006650 4.6e-71 271.6 180 72.2
Duzib147G1596 Durio zibethinus HOM05D005111 ORTHO05D006650 7.8e-71 270.8 182 70.9
Gohir.A10G101300 Gossypium hirsutum HOM05D005111 ORTHO05D006650 1.0e-70 270.4 182 70.3
Atru.chr6.2171 Acer truncatum HOM05D005111 ORTHO05D006650 1.3e-70 270.0 182 69.2
CiPaw.03G035600 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.7e-70 269.6 182 72.0
COL.COLO4_32007 Corchorus olitorius HOM05D005111 ORTHO05D006650 1.7e-70 269.6 182 69.8
Oeu047328.1 Olea europaea HOM05D005111 ORTHO05D006650 1.7e-70 269.6 183 69.9
Gohir.D10G087701 Gossypium hirsutum HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 69.8
Gorai.011G096000 Gossypium raimondii HOM05D005111 ORTHO05D006650 2.3e-70 269.2 182 69.8
Potri.001G350300 Populus trichocarpa HOM05D005111 ORTHO05D006650 3.0e-70 268.9 183 71.0
Thecc.04G004900 Theobroma cacao HOM05D005111 ORTHO05D006650 3.9e-70 268.5 182 70.9
TAR622G0537 Trochodendron aralioides HOM05D005111 ORTHO05D006650 3.9e-70 268.5 182 72.0
Cc07_g02510 Coffea canephora HOM05D005111 ORTHO05D006650 5.0e-70 268.1 178 72.5
Ah.16g106920 Amaranthus hybridus HOM05D005111 ORTHO05D006650 6.6e-70 267.7 182 68.1
Nitab4.5_0000632g0170 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.6e-70 267.7 182 68.7
Nitab4.5_0000844g0360 Nicotiana tabacum HOM05D005111 ORTHO05D006650 6.6e-70 267.7 182 68.7
Peaxi162Scf00036g00163 Petunia axillaris HOM05D005111 ORTHO05D006650 8.6e-70 267.3 182 69.8
ClCG09G018710 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.1e-69 266.9 182 70.3
ClCG09G018770 Citrullus lanatus HOM05D005111 ORTHO05D006650 1.1e-69 266.9 182 70.3
Duzib264G0177 Durio zibethinus HOM05D005111 ORTHO05D006650 1.9e-69 266.2 182 69.2
Sabra16G0229800 Salix brachista HOM05D005111 ORTHO05D006650 1.9e-69 266.2 183 70.5
Sed0025070 Sechium edule HOM05D005111 ORTHO05D006650 1.9e-69 266.2 182 70.3
Ciclev10016872m.g Citrus clementina HOM05D005111 ORTHO05D006650 2.5e-69 265.8 182 68.7
Nn3g16957 Nelumbo nucifera HOM05D005111 ORTHO05D006650 2.5e-69 265.8 182 70.9
EL10Ac2g03364 Beta vulgaris HOM05D005111 ORTHO05D006650 3.3e-69 265.4 178 71.9
Gohir.D04G053100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.3e-69 265.4 182 68.1
Gorai.012G059600 Gossypium raimondii HOM05D005111 ORTHO05D006650 3.3e-69 265.4 182 68.1
Gohir.A05G361100 Gossypium hirsutum HOM05D005111 ORTHO05D006650 4.3e-69 265.0 182 68.1
Solyc02g081950.4 Solanum lycopersicum HOM05D005111 ORTHO05D006650 4.3e-69 265.0 182 69.2
Sopen02g026580 Solanum pennellii HOM05D005111 ORTHO05D006650 5.6e-69 264.6 182 68.7
CAN.G809.38 Capsicum annuum HOM05D005111 ORTHO05D006650 9.5e-69 263.8 182 69.2
PGSC0003DMG400007321 Solanum tuberosum HOM05D005111 ORTHO05D006650 9.5e-69 263.8 182 68.7
Aqoxy3G00932 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 1.2e-68 263.5 181 69.6
MELO3C021519.2 Cucumis melo HOM05D005111 ORTHO05D006650 1.2e-68 263.5 182 69.8
CsaV3_5G037360 Cucumis sativus L. HOM05D005111 ORTHO05D006650 1.2e-68 263.5 182 69.8
SalBow1G6258 Salvia bowleyana HOM05D005111 ORTHO05D006650 1.2e-68 263.5 177 71.2
Hma1.2p1_2931F.1_g330500 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 1.6e-68 263.1 182 67.6
Nn4g22869 Nelumbo nucifera HOM05D005111 ORTHO05D006650 1.6e-68 263.1 179 70.9
Lj2g0005029 Lotus japonicus HOM05D005111 ORTHO05D006650 2.8e-68 262.3 175 71.4
Sed0001363 Sechium edule HOM05D005111 ORTHO05D006650 3.6e-68 261.9 182 69.2
Migut.H00147 Erythranthe guttata HOM05D005111 ORTHO05D006650 4.7e-68 261.5 180 68.3
Hma1.2p1_0967F.1_g242385 Hydrangea macrophylla HOM05D005111 ORTHO05D006650 4.7e-68 261.5 182 67.6
Eucgr.J02178 Eucalyptus grandis HOM05D005111 ORTHO05D006650 8.0e-68 260.8 182 67.6
Nitab4.5_0000389g0080 Nicotiana tabacum HOM05D005111 ORTHO05D006650 1.8e-67 259.6 182 67.6
SGA_v2.0_scaffold205G41716 Striga asiatica HOM05D005111 ORTHO05D006650 1.8e-67 259.6 178 69.7
Nitab4.5_0000005g0410 Nicotiana tabacum HOM05D005111 ORTHO05D006650 3.1e-67 258.8 182 67.6
TAR374G1688 Trochodendron aralioides HOM05D005111 ORTHO05D006650 6.8e-67 257.7 182 68.7
CDE10G0493 Ceratophyllum demersum HOM05D005111 ORTHO05D006650 1.2e-66 256.9 179 67.6
MSTRG.3306 Avicennia marina HOM05D005111 ORTHO05D006650 2.0e-66 256.1 180 68.9
unitig_744.g24353 Utricularia gibba HOM05D005111 ORTHO05D006650 3.4e-66 255.4 179 68.7
MSTRG.15504 Avicennia marina HOM05D005111 ORTHO05D006650 4.4e-66 255.0 180 68.3
SEGI_23218 Sequoiadendron giganteum HOM05D005111 ORTHO05D006650 4.4e-66 255.0 182 66.5
Glyma.19G011900 Glycine max HOM05D005111 ORTHO05D006650 5.8e-66 254.6 180 67.8
Potri.017G073800 Populus trichocarpa HOM05D005111 ORTHO05D006650 7.5e-66 254.2 179 68.2
CDE10G0889 Ceratophyllum demersum HOM05D004213 ORTHO05D005091 9.8e-66 253.8 177 67.8
Glyma.19G012000 Glycine max HOM05D005111 ORTHO05D006650 1.7e-65 253.1 178 68.5
Sc20g0002810 Simmondsia chinensis HOM05D005111 ORTHO05D006650 3.7e-65 251.9 170 71.2
PSO478G1103 Papaver somniferum HOM05D005111 ORTHO05D006650 4.9e-65 251.5 182 67.6
SalBow7G0796 Salvia bowleyana HOM05D005111 ORTHO05D006650 8.3e-65 250.8 177 68.4
Glyma.13G070800 Glycine max HOM05D005111 ORTHO05D006650 1.1e-64 250.4 180 67.2
SGA_v2.0_scaffold30G12485 Striga asiatica HOM05D005111 ORTHO05D006650 4.1e-64 248.4 178 66.9
arahy.Tifrunner.gnm1.ann1.68QD6J Arachis hypogaea HOM05D005111 ORTHO05D006650 5.4e-64 248.1 180 68.9
PSO017G5141 Papaver somniferum HOM05D005111 ORTHO05D006650 9.2e-64 247.3 182 66.5
VMungo0464G0112 Vigna mungo HOM05D005111 ORTHO05D006650 3.5e-63 245.4 183 65.0
Phvul.004G019100 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 6.0e-63 244.6 183 64.5
Aqoxy3G03068 Aquilegia oxysepala HOM05D005111 ORTHO05D006650 7.8e-63 244.2 182 66.5
Phvul.004G019200 Phaseolus vulgaris HOM05D005111 ORTHO05D006650 1.3e-62 243.4 183 65.0
Migut.K01364 Erythranthe guttata HOM05D005111 ORTHO05D006650 3.0e-62 242.3 179 66.5
VMungo0464G1864 Vigna mungo HOM05D005111 ORTHO05D006650 3.0e-62 242.3 183 63.9
Ca_04214_v3 Cicer arietinum L. HOM05D005111 ORTHO05D006650 8.6e-62 240.7 179 65.4
CiPaw.06G158200 Carya illinoinensis HOM05D005111 ORTHO05D006650 1.1e-61 240.4 182 63.2
Sp7g01780 Schrenkiella parvula HOM05D005111 ORTHO05D006650 1.1e-61 240.4 180 66.1
Lalb_Chr02g0159721 Lupinus albus HOM05D005111 ORTHO05D006650 1.5e-61 240.0 186 62.9
Psat1g060720 Pisum sativum HOM05D005111 ORTHO05D006650 5.6e-61 238.0 177 66.7
TPR.G2260 Trifolium pratense HOM05D005111 ORTHO05D006650 5.6e-61 238.0 179 64.2
Medtr6g007773 Medicago truncatula HOM05D005111 ORTHO05D006650 2.8e-60 235.7 180 63.9
Actinidia33968 Actinidia chinensis HOM05D005111 ORTHO05D000390 5.4e-56 221.5 182 59.3
ATR1149G112 Amborella trichopoda HOM05D005111 ORTHO05D006650 1.6e-52 209.9 176 61.4
Os09g0375400 Oryza sativa ssp. japonica HOM05D005111 ORTHO05D006650 4.1e-48 195.3 184 58.2
Cpa.g.sc286.5 Carica papaya HOM05D005111 ORTHO05D006650 3.9e-46 188.7 163 59.5
Zm00001eb098850 Zea mays HOM05D005111 ORTHO05D006650 1.3e-41 173.7 197 50.3
FAN09G1763 Fragaria x ananassa HOM05D005111 ORTHO05D006650 2.4e-40 169.5 115 68.7
Gohir.A09G025000 Gossypium hirsutum HOM05D005111 ORTHO05D006650 3.2e-40 169.1 121 65.3
Ah.07g198430 Amaranthus hybridus HOM05D005111 ORTHO05D003582 3.6e-36 155.6 159 49.7
SMO367G0111 Selaginella moellendorffii HOM05D005111 ORTHO05D006650 4.8e-36 155.2 183 40.4
CARHR149780 Cardamine hirsuta HOM05D005111 ORTHO05D006650 1.6e-28 130.2 99 64.6
Nn8g40738 Nelumbo nucifera HOM05D005111 ORTHO05D006650 5.1e-22 108.6 76 71.1
Actinidia27813 Actinidia chinensis HOM05D005111 ORTHO05D006650 6.2e-20 101.7 109 51.4
BcaC03g17502 Brassica carinata HOM05D005111 ORTHO05D039329 1.6e-15 87.0 52 73.1
Ciclev10033710m.g Citrus clementina HOM05D005111 ORTHO05D152558 4.6e-15 85.5 164 33.5
A02p35780 Brassica napus HOM05D005111 ORTHO05D006650 2.8e-12 76.3 54 61.1
BraA02t08578Z Brassica rapa HOM05D000028 ORTHO05D000390 2.8e-12 76.3 54 61.1
BcaC06g33752 Brassica carinata HOM05D005111 ORTHO05D093848 3.4e-10 69.3 38 86.8


User provided reference genes

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