Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p32130 Brassica napus HOM05D005128 ORTHO05D006227 1.2e-71 273.1 136 100.0
BolC3t18340H Brassica oleracea HOM05D005128 ORTHO05D006227 1.2e-71 273.1 136 100.0
BraA06t26141Z Brassica rapa HOM05D005128 ORTHO05D006227 1.2e-71 273.1 136 100.0
C03p60810 Brassica napus HOM05D005128 ORTHO05D006227 2.6e-71 271.9 136 99.3
Sp2g28380 Schrenkiella parvula HOM05D005128 ORTHO05D006227 8.6e-67 256.9 136 94.9
Aa31LG5G70 Aethionema arabicum HOM05D005128 ORTHO05D006227 7.3e-66 253.8 136 92.6
AT4G01710 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 1.2e-65 253.1 130 96.9
Thhalv10005116m.g Eutrema salsugineum HOM05D005128 ORTHO05D006227 1.2e-65 253.1 136 91.9
THA.LOC104814071 Tarenaya hassleriana HOM05D005128 ORTHO05D006227 1.2e-65 253.1 136 92.6
Carub.0006s3721 Capsella rubella HOM05D005128 ORTHO05D006227 3.6e-65 251.5 130 96.2
AL6G53500 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 6.2e-65 250.8 130 95.4
CARHR248040 Cardamine hirsuta HOM05D005128 ORTHO05D006227 1.8e-64 249.2 130 93.8
Actinidia40389 Actinidia chinensis HOM05D005128 ORTHO05D006227 3.4e-63 245.0 136 88.2
QL04p030930 Quercus lobata HOM05D005128 ORTHO05D006227 5.8e-63 244.2 135 88.1
Cpa.g.sc101.28 Carica papaya HOM05D005128 ORTHO05D006227 1.7e-62 242.7 136 87.5
vmacro13485 Vaccinium macrocarpon HOM05D005128 ORTHO05D006227 1.7e-62 242.7 136 86.8
AT5G65274 Arabidopsis thaliana HOM05D005128 ORTHO05D006227 2.9e-62 241.9 136 87.5
TAR374G1117 Trochodendron aralioides HOM05D005128 ORTHO05D006227 1.4e-61 239.6 136 85.3
Ciclev10029559m.g Citrus clementina HOM05D005128 ORTHO05D006227 1.9e-61 239.2 136 86.0
Duzib138G0976 Durio zibethinus HOM05D005128 ORTHO05D006227 4.1e-61 238.0 136 87.5
Cfa011089 Carpinus fangiana HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 86.0
Prupe.2G127400 Prunus persica HOM05D005128 ORTHO05D006227 5.4e-61 237.7 136 85.3
Peaxi162Scf00030g00515 Petunia axillaris HOM05D005128 ORTHO05D006227 7.1e-61 237.3 130 87.7
COL.COLO4_12428 Corchorus olitorius HOM05D005128 ORTHO05D006227 9.2e-61 236.9 136 86.8
Carub.0008s2615 Capsella rubella HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 85.3
Lj3g0015662 Lotus japonicus HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 86.0
Nn6g33850 Nelumbo nucifera HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 85.3
Thecc.01G392500 Theobroma cacao HOM05D005128 ORTHO05D006227 2.7e-60 235.3 136 86.0
CSS0048126 Camellia sinensis var. sinensis HOM05D005128 ORTHO05D006227 3.5e-60 235.0 131 87.8
ClCG11G006910 Citrullus lanatus HOM05D005128 ORTHO05D006227 3.5e-60 235.0 136 86.0
MBI04_g34109_MAGBIO Magnolia biondii HOM05D005128 ORTHO05D006227 3.5e-60 235.0 131 87.0
Nitab4.5_0002874g0020 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.5e-60 235.0 130 86.9
Nitab4.5_0003553g0110 Nicotiana tabacum HOM05D005128 ORTHO05D006227 3.5e-60 235.0 130 86.9
CiPaw.13G027900 Carya illinoinensis HOM05D005128 ORTHO05D006227 6.0e-60 234.2 136 83.8
CAN.G362.11 Capsicum annuum HOM05D005128 ORTHO05D006227 1.3e-59 233.0 129 86.8
CsaV3_6G001140 Cucumis sativus L. HOM05D005128 ORTHO05D006227 1.3e-59 233.0 136 85.3
MELO3C008212.2 Cucumis melo HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 86.0
Sed0016496 Sechium edule HOM05D005128 ORTHO05D006227 1.7e-59 232.6 133 87.2
GSVIVG01018248001 Vitis vinifera HOM05D005128 ORTHO05D006227 1.7e-59 232.6 136 83.1
FvH4_7g09830 Fragaria vesca HOM05D005128 ORTHO05D006227 2.3e-59 232.3 129 86.8
FAN03G0006 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.3e-59 232.3 129 86.8
FAN10G0506 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.3e-59 232.3 129 86.8
RcHm_v2.0_Chr1g0346991 Rosa chinensis HOM05D005128 ORTHO05D006227 2.3e-59 232.3 129 86.8
HanXRQChr05g0138471 Helianthus annuus HOM05D005128 ORTHO05D006227 3.9e-59 231.5 132 86.4
ECA234G3101 Erigeron canadensis HOM05D005128 ORTHO05D006227 5.1e-59 231.1 132 85.6
FAN10G2714 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.1e-59 231.1 129 86.0
Manes.01G272200 Manihot esculenta HOM05D005128 ORTHO05D006227 5.1e-59 231.1 136 83.1
Solyc01g090450.3 Solanum lycopersicum HOM05D005128 ORTHO05D006227 5.1e-59 231.1 129 86.0
Atru.chr5.161 Acer truncatum HOM05D005128 ORTHO05D006227 8.7e-59 230.3 134 84.3
FAN06G2910 Fragaria x ananassa HOM05D005128 ORTHO05D006227 8.7e-59 230.3 127 86.6
MD02G1216700 Malus domestica HOM05D005128 ORTHO05D006227 8.7e-59 230.3 136 83.1
TWI14G0708 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.8
TWI14G1050 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.1e-58 229.9 136 83.8
Lsat_1_v5_gn_4_46700 Lactuca sativa HOM05D005128 ORTHO05D006227 1.5e-58 229.6 132 85.6
Medtr8g006725 Medicago truncatula HOM05D005128 ORTHO05D006227 1.5e-58 229.6 136 83.1
Gohir.D12G099300 Gossypium hirsutum HOM05D005128 ORTHO05D006227 1.9e-58 229.2 136 85.3
Gorai.008G108000 Gossypium raimondii HOM05D005128 ORTHO05D006227 1.9e-58 229.2 136 85.3
PSO782G3280 Papaver somniferum HOM05D005128 ORTHO05D006227 1.9e-58 229.2 136 83.1
Migut.B01551 Erythranthe guttata HOM05D005128 ORTHO05D006227 2.5e-58 228.8 130 84.6
FAN06G2047 Fragaria x ananassa HOM05D005128 ORTHO05D006227 2.5e-58 228.8 129 86.0
Sopen01g036240 Solanum pennellii HOM05D005128 ORTHO05D006227 2.5e-58 228.8 129 85.3
Cc02_g24910 Coffea canephora HOM05D005128 ORTHO05D006227 3.3e-58 228.4 133 85.7
Migut.A00726 Erythranthe guttata HOM05D005128 ORTHO05D006227 3.3e-58 228.4 130 83.1
Ca_14055_v3 Cicer arietinum L. HOM05D005128 ORTHO05D006227 4.3e-58 228.0 136 82.4
Glyma.07G112500 Glycine max HOM05D005128 ORTHO05D006227 5.6e-58 227.6 136 82.4
Psat0s118g0040 Pisum sativum HOM05D005128 ORTHO05D006227 5.6e-58 227.6 136 83.1
PGR042G1446 Punica granatum HOM05D005128 ORTHO05D006227 5.6e-58 227.6 136 81.6
VMungo0331G0261 Vigna mungo HOM05D005128 ORTHO05D006227 5.6e-58 227.6 136 82.4
MSTRG.20701 Avicennia marina HOM05D005128 ORTHO05D006227 9.6e-58 226.9 130 85.4
AUR62023426 Chenopodium quinoa HOM05D005128 ORTHO05D006227 1.6e-57 226.1 136 81.6
Eucgr.E01576 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.6e-57 226.1 136 81.6
Medtr1g112900 Medicago truncatula HOM05D005128 ORTHO05D006227 1.6e-57 226.1 136 81.6
PSO063G1454 Papaver somniferum HOM05D005128 ORTHO05D006227 1.6e-57 226.1 136 82.4
TWI59G1443 Tripterygium wilfordii HOM05D005128 ORTHO05D006227 1.6e-57 226.1 130 86.9
Gohir.A12G096500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 4.7e-57 224.6 136 83.1
Phvul.010G052100 Phaseolus vulgaris HOM05D005128 ORTHO05D006227 6.2e-57 224.2 136 81.6
Glyma.03G114200 Glycine max HOM05D005128 ORTHO05D006227 1.1e-56 223.4 136 81.6
Potri.014G045200 Populus trichocarpa HOM05D005128 ORTHO05D006227 1.1e-56 223.4 138 81.2
TPR.G33121 Trifolium pratense HOM05D005128 ORTHO05D006227 1.1e-56 223.4 136 81.6
EL10Ac1g00782 Beta vulgaris HOM05D005128 ORTHO05D006227 1.8e-56 222.6 136 80.1
Hund11691 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.4e-56 222.2 136 81.6
Zm00001eb201920 Zea mays HOM05D005128 ORTHO05D006227 2.4e-56 222.2 137 81.0
Potri.002G136500 Populus trichocarpa HOM05D005128 ORTHO05D006227 3.1e-56 221.9 138 80.4
ATR0057G123 Amborella trichopoda HOM05D005128 ORTHO05D006227 4.0e-56 221.5 136 77.9
Aqoxy3G02773 Aquilegia oxysepala HOM05D005128 ORTHO05D006227 4.0e-56 221.5 129 82.2
CDE11G0478 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 6.9e-56 220.7 136 78.7
SGA_v2.0_scaffold52G19215 Striga asiatica HOM05D005128 ORTHO05D006227 6.9e-56 220.7 127 83.5
unitig_0.g1324 Utricularia gibba HOM05D005128 ORTHO05D006227 6.9e-56 220.7 133 80.5
AUR62013728 Chenopodium quinoa HOM05D005128 ORTHO05D006227 9.0e-56 220.3 136 79.4
Lalb_Chr07g0195501 Lupinus albus HOM05D005128 ORTHO05D006227 1.5e-55 219.5 130 80.8
Os11g0557900 Oryza sativa ssp. japonica HOM05D005128 ORTHO05D006227 1.5e-55 219.5 136 79.4
Lalb_Chr13g0304581 Lupinus albus HOM05D005128 ORTHO05D006227 2.0e-55 219.2 134 79.1
Manes.05G053000 Manihot esculenta HOM05D005128 ORTHO05D006227 3.4e-55 218.4 131 81.7
AL8G42840 Arabidopsis lyrata HOM05D005128 ORTHO05D006227 9.9e-55 216.9 131 81.7
FAN03G2425 Fragaria x ananassa HOM05D005128 ORTHO05D006227 1.3e-54 216.5 152 72.4
HPP92_009947 Vanilla planifolia HOM05D005379 ORTHO05D006227 5.4e-53 211.1 128 78.1
HanXRQChr16g0520301 Helianthus annuus HOM05D005128 ORTHO05D006227 2.7e-52 208.8 125 80.0
arahy.Tifrunner.gnm1.ann1.L9RWF4 Arachis hypogaea HOM05D005128 ORTHO05D006227 4.6e-52 208.0 168 66.7
arahy.Tifrunner.gnm1.ann1.V0IP08 Arachis hypogaea HOM05D005128 ORTHO05D006227 1.3e-51 206.5 168 66.1
Nn1g00897 Nelumbo nucifera HOM05D005128 ORTHO05D006227 3.9e-51 204.9 129 76.0
Gohir.D11G020200 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.7e-51 203.8 136 74.3
PGSC0003DMG400026042 Solanum tuberosum HOM05D005128 ORTHO05D006227 1.9e-50 202.6 182 59.9
Gohir.A13G167950 Gossypium hirsutum HOM05D005128 ORTHO05D006227 2.1e-49 199.1 136 71.3
Gorai.007G021500 Gossypium raimondii HOM05D005128 ORTHO05D006227 2.1e-49 199.1 136 72.8
Ah.05g173200 Amaranthus hybridus HOM05D005128 ORTHO05D006227 5.3e-48 194.5 200 54.0
Haze_02808 Corylus avellana HOM05D005128 ORTHO05D006227 3.4e-47 191.8 137 73.7
Sc02g0003030 Simmondsia chinensis HOM05D005128 ORTHO05D006227 1.4e-45 186.4 102 85.3
MD07G1103100 Malus domestica HOM05D005128 ORTHO05D006227 2.4e-45 185.7 136 72.1
Mapoly0006s0266 Marchantia polymorpha HOM05D005128 ORTHO05D006227 2.7e-44 182.2 130 63.8
FAN01G3136 Fragaria x ananassa HOM05D005128 ORTHO05D006227 5.1e-43 177.9 129 72.1
AagrBONN_evm.TU.Sc2ySwM_369.249 Anthoceros agrestis HOM05D005128 ORTHO05D006227 4.3e-42 174.9 133 61.7
SGA_v2.0_scaffold153G36917 Striga asiatica HOM05D005128 ORTHO05D006227 2.8e-41 172.2 127 70.1
SMO203G0150 Selaginella moellendorffii HOM05D005128 ORTHO05D006227 3.7e-41 171.8 123 65.9
AagrBONN_evm.TU.Sc2ySwM_369.256 Anthoceros agrestis HOM05D005128 ORTHO05D006227 4.8e-41 171.4 129 65.1
Pp3c15_3940 Physcomitrium patens HOM05D005128 ORTHO05D006227 9.9e-39 163.7 130 60.0
CiPaw.14G021600 Carya illinoinensis HOM05D005128 ORTHO05D006227 1.1e-37 160.2 144 63.9
SEGI_29435 Sequoiadendron giganteum HOM05D005128 ORTHO05D006227 1.6e-36 156.4 110 68.2
CDE02G2422 Ceratophyllum demersum HOM05D005128 ORTHO05D006227 1.3e-33 146.7 79 83.5
Dinv44074 Davidia involucrata HOM05D005128 ORTHO05D006227 1.3e-33 146.7 93 80.6
SalBow7G0891 Salvia bowleyana HOM05D005128 ORTHO05D006227 8.2e-33 144.1 85 82.4
Oeu064660.1 Olea europaea HOM05D005128 ORTHO05D006227 1.4e-32 143.3 85 83.5
Nitab4.5_0029376g0010 Nicotiana tabacum HOM05D005128 ORTHO05D006227 1.8e-32 142.9 84 84.5
Eucgr.E00550 Eucalyptus grandis HOM05D005128 ORTHO05D006227 9.0e-32 140.6 97 72.2
SalBow5G0414 Salvia bowleyana HOM05D005128 ORTHO05D006227 2.0e-31 139.4 85 80.0
Eucgr.L02413 Eucalyptus grandis HOM05D005128 ORTHO05D006227 3.4e-31 138.7 80 77.5
Sed0016493 Sechium edule HOM05D005128 ORTHO05D006227 1.3e-30 136.7 136 60.3
Eucgr.E04335 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.4e-30 134.0 80 76.2
Lalb_Chr13g0304531 Lupinus albus HOM05D005128 ORTHO05D006227 1.4e-29 133.3 89 75.3
Lalb_Chr13g0304521 Lupinus albus HOM05D005128 ORTHO05D006227 3.2e-29 132.1 89 74.2
Lalb_Chr13g0304591 Lupinus albus HOM05D005128 ORTHO05D006227 3.2e-29 132.1 89 74.2
Sabra14G0033100 Salix brachista HOM05D005128 ORTHO05D006227 4.6e-28 128.3 71 81.7
Eucgr.C04409 Eucalyptus grandis HOM05D005128 ORTHO05D006227 2.3e-27 125.9 92 69.6
MD15G1416400 Malus domestica HOM05D005128 ORTHO05D006227 6.7e-27 124.4 105 65.7
Eucgr.H02816 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.7e-27 124.0 75 74.7
Eucgr.J01375 Eucalyptus grandis HOM05D005128 ORTHO05D006227 1.1e-26 123.6 90 70.0
Hund07697 Selenicereus undatus HOM05D005128 ORTHO05D006227 4.3e-26 121.7 85 75.3
Eucgr.J01567 Eucalyptus grandis HOM05D005128 ORTHO05D006227 4.8e-25 118.2 68 77.9
Eucgr.E02797 Eucalyptus grandis HOM05D005128 ORTHO05D006227 8.2e-25 117.5 85 71.8
Lj9C558G6 Lonicera japonica HOM05D001638 ORTHO05D001875 1.7e-22 109.8 65 76.9
Gorai.002G193300 Gossypium raimondii HOM05D005128 ORTHO05D006227 3.2e-21 105.5 91 60.4
Gohir.D01G155933 Gossypium hirsutum HOM05D005128 ORTHO05D006227 8.8e-19 97.4 91 58.2
Hund17078 Selenicereus undatus HOM05D005128 ORTHO05D006227 2.2e-17 92.8 83 59.0
Lalb_Chr13g0304551 Lupinus albus HOM05D005128 ORTHO05D006227 6.3e-17 91.3 46 84.8
TPR.G6927 Trifolium pratense HOM05D005128 ORTHO05D006922 2.4e-16 89.4 45 84.4
MD07G1103500 Malus domestica HOM05D005128 ORTHO05D006227 7.9e-12 74.3 56 69.6
BcaC03g18322 Brassica carinata HOM05D005128 ORTHO05D006227 4.4e-10 68.6 42 78.6
Gohir.A11G020500 Gossypium hirsutum HOM05D005128 ORTHO05D006227 3.1e-08 62.4 57 61.4
TPR.G6976 Trifolium pratense HOM05D005128 ORTHO05D006227 3.1e-08 62.4 41 65.9


User provided reference genes

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