Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p28670 Brassica napus HOM05D004329 ORTHO05D005516 0.0e+00 1177.2 603 100.0
BraA06t25807Z Brassica rapa HOM05D004329 ORTHO05D005516 0.0e+00 1176.0 603 99.8
BcaC01g02451 Brassica carinata HOM05D004329 ORTHO05D005516 0.0e+00 1167.1 603 99.2
C03p65130 Brassica napus HOM05D004329 ORTHO05D005516 0.0e+00 1167.1 603 99.2
BolC3t18767H Brassica oleracea HOM05D004329 ORTHO05D005516 0.0e+00 1167.1 603 99.2
BcaB02g09609 Brassica carinata HOM05D004329 ORTHO05D005516 0.0e+00 1133.2 603 96.2
Sp2g25150 Schrenkiella parvula HOM05D004329 ORTHO05D005516 0.0e+00 1112.1 603 93.9
BolC2t12235H Brassica oleracea HOM05D004329 ORTHO05D005516 0.0e+00 1095.1 597 92.8
Thhalv10003854m.g Eutrema salsugineum HOM05D004329 ORTHO05D005516 0.0e+00 1092.8 605 92.4
BraA02t09122Z Brassica rapa HOM05D004329 ORTHO05D005516 0.0e+00 1090.5 601 91.7
AL8G38730 Arabidopsis lyrata HOM05D004329 ORTHO05D005516 8.2e-312 1073.2 605 90.6
Carub.0008s2266 Capsella rubella HOM05D004329 ORTHO05D005516 9.1e-310 1066.2 603 90.4
AT5G61970 Arabidopsis thaliana HOM05D004329 ORTHO05D005516 5.0e-308 1060.4 601 90.0
BcaB07g29807 Brassica carinata HOM05D004329 ORTHO05D005516 8.0e-306 1053.1 624 87.8
Carub.0005s0295 Capsella rubella HOM05D004329 ORTHO05D005516 6.7e-305 1050.0 602 89.0
Aa31LG11G1550 Aethionema arabicum HOM05D004329 ORTHO05D005516 9.7e-304 1046.2 603 88.1
THA.LOC104819422 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 7.0e-286 986.9 601 82.5
THA.LOC104823903 Tarenaya hassleriana HOM05D004329 ORTHO05D005516 1.0e-284 983.0 601 82.9
Duzib205G0720 Durio zibethinus HOM05D004329 ORTHO05D005516 1.5e-275 952.6 598 80.1
Atru.chr6.1908 Acer truncatum HOM05D004329 ORTHO05D005516 1.4e-273 946.0 598 79.6
Thecc.03G139600 Theobroma cacao HOM05D004329 ORTHO05D005516 2.0e-272 942.2 598 79.4
Potri.015G105600 Populus trichocarpa HOM05D004329 ORTHO05D005516 7.5e-272 940.3 598 78.3
Potri.012G106200 Populus trichocarpa HOM05D004329 ORTHO05D005516 2.7e-269 931.8 598 78.1
CANSAT80G0883 Cannabis sativa HOM05D004329 ORTHO05D005516 2.5e-267 925.2 591 78.2
Gohir.A07G047200 Gossypium hirsutum HOM05D004329 ORTHO05D005516 4.3e-267 924.5 606 77.6
Ciclev10031005m.g Citrus clementina HOM05D004329 ORTHO05D005516 9.5e-267 923.3 596 78.2
Prupe.5G142700 Prunus persica HOM05D004329 ORTHO05D005516 9.5e-267 923.3 603 76.9
Gohir.D07G051400 Gossypium hirsutum HOM05D004329 ORTHO05D005516 2.8e-266 921.8 600 77.3
TWI39G0623 Tripterygium wilfordii HOM05D004329 ORTHO05D005516 3.6e-266 921.4 598 77.6
CANSAT80G0741 Cannabis sativa HOM05D004329 ORTHO05D005516 6.2e-266 920.6 592 78.0
Cfa018712 Carpinus fangiana HOM05D004329 ORTHO05D005516 3.1e-265 918.3 598 77.4
Gorai.001G054500 Gossypium raimondii HOM05D004329 ORTHO05D005516 6.8e-265 917.1 614 75.7
Sc22g0003470 Simmondsia chinensis HOM05D004329 ORTHO05D005516 6.8e-265 917.1 600 76.5
vmacro19178 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 2.2e-263 912.1 599 76.5
MD14G1148000 Malus domestica HOM05D004329 ORTHO05D005516 3.7e-263 911.4 601 76.5
Sabra15G0125900 Salix brachista HOM05D004329 ORTHO05D005516 3.7e-263 911.4 646 72.6
QL10p000650 Quercus lobata HOM05D004329 ORTHO05D005516 1.9e-262 909.1 591 77.5
MD06G1131700 Malus domestica HOM05D004329 ORTHO05D005516 3.2e-262 908.3 594 77.1
Rhsim08G0196600 Rhododendron simsii HOM05D004329 ORTHO05D005516 5.4e-262 907.5 599 76.3
Dinv23217 Davidia involucrata HOM05D004329 ORTHO05D005516 6.0e-261 904.0 602 75.6
Haze_07104 Corylus avellana HOM05D004329 ORTHO05D005516 7.8e-261 903.7 622 74.3
CSS0022050 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.7e-260 902.5 599 75.6
Nitab4.5_0007718g0050 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.7e-260 902.5 602 76.2
Sopen03g024820 Solanum pennellii HOM05D004329 ORTHO05D005516 1.7e-260 902.5 601 76.5
EL10Ac7g17942 Beta vulgaris HOM05D004329 ORTHO05D005516 2.3e-260 902.1 601 75.7
vmacro06162 Vaccinium macrocarpon HOM05D004329 ORTHO05D005516 1.5e-259 899.4 599 75.3
Solyc03g093970.3 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.3e-259 897.9 601 76.4
Actinidia18306 Actinidia chinensis HOM05D004329 ORTHO05D005516 1.2e-258 896.3 599 74.8
Manes.06G126200 Manihot esculenta HOM05D004329 ORTHO05D005516 2.1e-258 895.6 599 75.6
ClCG03G012650 Citrullus lanatus HOM05D004329 ORTHO05D005516 2.8e-258 895.2 596 75.5
TAR374G0799 Trochodendron aralioides HOM05D004329 ORTHO05D005516 2.8e-258 895.2 598 74.7
TPR.G12807 Trifolium pratense HOM05D004329 ORTHO05D005516 8.1e-258 893.6 603 73.6
Nn4g22142 Nelumbo nucifera HOM05D004329 ORTHO05D005516 1.1e-257 893.3 596 74.7
Sed0013101 Sechium edule HOM05D004329 ORTHO05D005516 3.1e-257 891.7 596 75.0
CsaV3_1G043340 Cucumis sativus L. HOM05D004329 ORTHO05D005516 6.8e-257 890.6 596 75.0
Solyc02g062810.4 Solanum lycopersicum HOM05D004329 ORTHO05D005516 6.8e-257 890.6 601 75.7
COL.COLO4_37247 Corchorus olitorius HOM05D004329 ORTHO05D005516 8.9e-257 890.2 606 75.2
Ca_16811_v3 Cicer arietinum L. HOM05D004329 ORTHO05D005516 1.5e-256 889.4 603 73.8
Medtr8g100110 Medicago truncatula HOM05D004329 ORTHO05D005516 2.0e-256 889.0 603 73.5
Sopen02g013850 Solanum pennellii HOM05D004329 ORTHO05D005516 2.0e-256 889.0 601 75.2
RcHm_v2.0_Chr7g0188791 Rosa chinensis HOM05D004329 ORTHO05D005516 3.4e-256 888.3 601 74.7
MELO3C015126.2 Cucumis melo HOM05D004329 ORTHO05D005516 4.4e-256 887.9 596 75.3
MSTRG.22850 Avicennia marina HOM05D004329 ORTHO05D005516 7.5e-256 887.1 594 74.6
CAN.G1210.1 Capsicum annuum HOM05D004329 ORTHO05D005516 9.9e-256 886.7 601 75.4
GSVIVG01008641001 Vitis vinifera HOM05D004329 ORTHO05D005516 2.2e-255 885.6 598 75.3
Aqoxy4G00231 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 2.9e-255 885.2 598 74.9
Lj4g0026438 Lotus japonicus HOM05D004329 ORTHO05D005516 3.7e-255 884.8 603 73.5
Actinidia36840 Actinidia chinensis HOM05D004329 ORTHO05D005516 4.9e-255 884.4 599 73.8
CARHR275760 Cardamine hirsuta HOM05D004329 ORTHO05D005516 4.9e-255 884.4 479 94.2
Migut.I00617 Erythranthe guttata HOM05D004329 ORTHO05D005516 6.4e-255 884.0 599 74.5
Hma1.2p1_0493F.1_g164990 Hydrangea macrophylla HOM05D004329 ORTHO05D005516 6.4e-255 884.0 599 74.5
Psat7g039240 Pisum sativum HOM05D004329 ORTHO05D005516 1.4e-254 882.9 603 73.1
FAN13G1968 Fragaria x ananassa HOM05D004329 ORTHO05D005516 1.9e-254 882.5 616 73.4
FAN18G1836 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.4e-254 882.1 605 74.2
Sabra12G0078600 Salix brachista HOM05D004329 ORTHO05D005516 4.1e-254 881.3 679 68.2
CiPaw.09G139600 Carya illinoinensis HOM05D004329 ORTHO05D005516 7.1e-254 880.6 567 77.8
PGR083G0006 Punica granatum HOM05D004329 ORTHO05D005516 1.2e-253 879.8 591 75.0
FvH4_5g09400 Fragaria vesca HOM05D004329 ORTHO05D005516 1.6e-253 879.4 605 74.0
VMungo0251G1423 Vigna mungo HOM05D004329 ORTHO05D005516 1.6e-253 879.4 603 72.5
Peaxi162Scf00935g00018 Petunia axillaris HOM05D004329 ORTHO05D005516 2.7e-253 878.6 602 74.3
Phvul.002G282000 Phaseolus vulgaris HOM05D004329 ORTHO05D005516 6.0e-253 877.5 603 72.1
Glyma.05G200600 Glycine max HOM05D004329 ORTHO05D005516 1.3e-252 876.3 603 72.5
Sed0023904 Sechium edule HOM05D004329 ORTHO05D005516 2.3e-252 875.5 598 74.2
SGA_v2.0_scaffold74G24730 Striga asiatica HOM05D004329 ORTHO05D005516 1.9e-251 872.5 615 71.9
Lalb_Chr07g0183781 Lupinus albus HOM05D004329 ORTHO05D005516 3.3e-251 871.7 596 73.0
Eucgr.F03808 Eucalyptus grandis HOM05D004329 ORTHO05D005516 5.6e-251 870.9 601 73.4
Oeu012844.2 Olea europaea HOM05D004329 ORTHO05D005516 1.2e-248 863.2 655 68.1
Lsat_1_v5_gn_4_84600 Lactuca sativa HOM05D004329 ORTHO05D005516 1.7e-247 859.4 607 71.7
arahy.Tifrunner.gnm1.ann1.IBL9WM Arachis hypogaea HOM05D004329 ORTHO05D005516 2.4e-246 855.5 597 72.4
arahy.Tifrunner.gnm1.ann1.HJ5J7F Arachis hypogaea HOM05D004329 ORTHO05D005516 4.6e-245 851.3 594 72.4
Lj5A87T69 Lonicera japonica HOM05D004329 ORTHO05D005516 6.0e-245 850.9 589 72.7
ATR1096G004 Amborella trichopoda HOM05D004329 ORTHO05D005516 3.9e-244 848.2 595 70.4
FAN04G0329 Fragaria x ananassa HOM05D004329 ORTHO05D005516 6.2e-242 840.9 601 72.7
Hund02504 Selenicereus undatus HOM05D004329 ORTHO05D005516 6.2e-242 840.9 548 77.2
PSO017G7154 Papaver somniferum HOM05D004329 ORTHO05D005516 1.2e-240 836.6 600 70.2
ECA232G2772 Erigeron canadensis HOM05D004329 ORTHO05D005516 2.0e-240 835.9 597 69.7
Dinv13728 Davidia involucrata HOM05D004329 ORTHO05D005516 3.4e-240 835.1 568 74.6
PSO478G2811 Papaver somniferum HOM05D004329 ORTHO05D005516 3.4e-240 835.1 600 69.8
HanXRQChr09g0273891 Helianthus annuus HOM05D004329 ORTHO05D005516 1.3e-239 833.2 601 69.4
Actinidia08906 Actinidia chinensis HOM05D000877 ORTHO05D001509 4.9e-239 831.2 541 76.2
Glyma.08G008000 Glycine max HOM05D004329 ORTHO05D005516 1.9e-238 829.3 561 73.3
FAN08G1859 Fragaria x ananassa HOM05D004329 ORTHO05D005516 2.7e-237 825.5 564 75.0
DCAR_016350 Daucus carota HOM05D004329 ORTHO05D005516 1.0e-236 823.5 550 74.5
Cpa.g.sc13.162 Carica papaya HOM05D004329 ORTHO05D005516 6.9e-233 810.8 596 70.8
AUR62009528 Chenopodium quinoa HOM05D004329 ORTHO05D005516 6.9e-233 810.8 596 70.3
AUR62041693 Chenopodium quinoa HOM05D004329 ORTHO05D005516 2.6e-232 808.9 596 70.1
C02p61780 Brassica napus HOM05D004329 ORTHO05D005516 2.3e-228 795.8 430 93.5
SGA_v2.0_scaffold40G15626 Striga asiatica HOM05D004329 ORTHO05D005516 5.1e-228 794.7 613 66.7
SalBow1G7365 Salvia bowleyana HOM05D004329 ORTHO05D005516 1.8e-225 786.2 639 64.3
PSO081G0143 Papaver somniferum HOM05D004329 ORTHO05D005516 3.3e-219 765.4 600 65.8
unitig_32.g11043 Utricularia gibba HOM05D004329 ORTHO05D005516 4.8e-218 761.5 652 60.1
Manes.14G045200 Manihot esculenta HOM05D004329 ORTHO05D005516 3.1e-217 758.8 476 80.3
PGSC0003DMG400015501 Solanum tuberosum HOM05D004329 ORTHO05D005516 7.6e-216 754.2 496 77.0
Zm00001eb327290 Zea mays HOM05D004329 ORTHO05D005516 1.1e-214 750.4 599 64.4
SEGI_15405 Sequoiadendron giganteum HOM05D004329 ORTHO05D005516 7.9e-213 744.2 598 63.4
MBI13_g15007_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 1.0e-212 743.8 503 73.8
CDE04G3457 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 7.7e-208 727.6 601 62.9
AUR62044173 Chenopodium quinoa HOM05D004329 ORTHO05D005516 5.3e-193 678.3 551 64.8
Cc09_g07950 Coffea canephora HOM05D004329 ORTHO05D005516 4.2e-182 642.1 440 73.4
A02p41850 Brassica napus HOM05D004329 ORTHO05D005516 5.5e-182 641.7 366 90.2
MBI13_g43178_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.1e-177 625.9 503 64.8
AagrBONN_evm.TU.Sc2ySwM_228.1186 Anthoceros agrestis HOM05D004329 ORTHO05D005516 1.0e-172 610.9 604 53.6
Mapoly0153s0017 Marchantia polymorpha HOM05D004329 ORTHO05D005516 1.6e-168 597.0 599 51.8
Pp3c15_22190 Physcomitrium patens HOM05D004329 ORTHO05D005516 1.6e-165 587.0 570 52.1
Os08g0323000 Oryza sativa ssp. japonica HOM05D004329 ORTHO05D005516 2.3e-156 556.6 439 64.5
Ah.11g046840 Amaranthus hybridus HOM05D004329 ORTHO05D005516 2.3e-140 503.4 336 74.4
CBR_g20988 Chara braunii HOM05D004329 ORTHO05D005516 5.8e-139 498.8 618 45.1
HPP92_028710 Vanilla planifolia HOM05D004329 ORTHO05D005516 7.3e-134 481.9 418 59.8
SMO356G0738 Selaginella moellendorffii HOM05D004329 ORTHO05D005516 4.6e-128 462.6 577 43.2
FAN18G2676 Fragaria x ananassa HOM05D004329 ORTHO05D005516 3.9e-127 459.5 531 51.8
Nitab4.5_0017885g0010 Nicotiana tabacum HOM05D004329 ORTHO05D005516 6.6e-127 458.8 334 70.7
Nitab4.5_0009429g0030 Nicotiana tabacum HOM05D004329 ORTHO05D005516 1.3e-122 444.5 286 78.7
CDE07G0688 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 3.9e-111 406.4 246 79.3
Cc00_g30130 Coffea canephora HOM05D004329 ORTHO05D005516 2.8e-109 400.2 281 72.6
Aqoxy5G01090 Aquilegia oxysepala HOM05D004329 ORTHO05D005516 5.7e-102 375.9 437 48.7
CDE07G1247 Ceratophyllum demersum HOM05D004329 ORTHO05D005516 6.1e-88 329.3 272 64.0
TAR622G0210 Trochodendron aralioides HOM05D004329 ORTHO05D005516 1.0e-87 328.6 316 56.6
BcaC03g18112 Brassica carinata HOM05D004329 ORTHO05D005516 2.6e-78 297.4 156 94.9
Cre06.g267100 Chlamydomonas reinhardtii HOM05D004329 ORTHO05D005516 1.4e-76 291.6 673 31.6
MBI13_g13130_MAGBIO Magnolia biondii HOM05D004329 ORTHO05D005516 3.1e-68 263.8 176 76.1
MCO15G338 Micromonas commoda HOM05D004329 ORTHO05D005516 3.5e-67 260.4 543 32.6
Cc09_g07990 Coffea canephora HOM05D004329 ORTHO05D005516 3.0e-55 220.7 153 73.2
Cc09_g07980 Coffea canephora HOM05D004329 ORTHO05D005516 3.4e-54 217.2 149 73.2
CSS0034501 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 8.6e-42 176.0 102 83.3
PRCOL_00003443 Prasinoderma coloniale HOM05D004329 ORTHO05D005516 2.5e-41 174.5 636 26.9
CSS0009974 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 1.6e-40 171.8 105 79.0
C02p61790 Brassica napus HOM05D004329 ORTHO05D005516 8.0e-40 169.5 97 85.6
CARHR275770 Cardamine hirsuta HOM05D004329 ORTHO05D005516 6.6e-34 149.8 97 73.2
Solyc02g062830.2 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.7e-32 143.7 96 74.0
AagrBONN_evm.TU.Sc2ySwM_228.1280 Anthoceros agrestis HOM05D004329 ORTHO05D005516 2.6e-30 137.9 186 44.1
AagrBONN_evm.TU.Sc2ySwM_228.1281 Anthoceros agrestis HOM05D004329 ORTHO05D005516 3.7e-29 134.0 120 53.3
Solyc02g062840.1 Solanum lycopersicum HOM05D004329 ORTHO05D005516 4.4e-22 110.5 66 80.3
CAN.G865.5 Capsicum annuum HOM05D004329 ORTHO05D005516 1.9e-20 105.1 69 66.7
Haze_22596 Corylus avellana HOM05D004329 ORTHO05D010424 7.1e-20 103.2 72 65.3
Cfa027290 Carpinus fangiana HOM05D004329 ORTHO05D121551 1.3e-18 99.0 624 24.5
Zm00001eb081410 Zea mays HOM05D004902 ORTHO05D006603 1.3e-18 99.0 78 57.7
Lsat_1_v5_gn_2_122301 Lactuca sativa HOM05D009063 ORTHO05D011082 4.3e-17 94.0 193 34.2
CSS0048280 Camellia sinensis var. sinensis HOM05D004329 ORTHO05D005516 3.1e-15 87.8 95 55.8
Lsat_1_v5_gn_5_81961 Lactuca sativa HOM05D004329 ORTHO05D005516 1.7e-13 82.0 49 75.5
Zm00001eb202340 Zea mays HOM05D004329 ORTHO05D005516 2.2e-13 81.6 71 50.7
Lsat_1_v5_gn_8_114301 Lactuca sativa HOM05D004329 ORTHO05D005516 8.4e-13 79.7 48 75.0
Hund31053 Selenicereus undatus HOM05D004329 ORTHO05D026010 1.6e-08 65.5 51 64.7
Sopen02g013860 Solanum pennellii HOM05D004329 ORTHO05D026010 3.6e-08 64.3 59 59.3
Hund31064 Selenicereus undatus HOM05D004329 ORTHO05D026010 4.8e-08 63.9 51 62.7
Solyc04g048930.1 Solanum lycopersicum HOM05D004329 ORTHO05D026010 3.4e-06 57.8 52 59.6


User provided reference genes

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