Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p14850 Brassica napus HOM05D003507 ORTHO05D021543 6.7e-51 203.8 105 100.0
A05p38780 Brassica napus HOM05D003507 ORTHO05D004324 3.5e-23 111.7 61 96.7
BcaC05g29472 Brassica carinata HOM05D003507 ORTHO05D004324 1.0e-22 110.2 61 95.1
BcaNung06834 Brassica carinata HOM05D003507 ORTHO05D004324 1.0e-22 110.2 61 95.1
C05p57790 Brassica napus HOM05D003507 ORTHO05D004324 1.0e-22 110.2 61 95.1
BolC5t34436H Brassica oleracea HOM05D003507 ORTHO05D004324 1.0e-22 110.2 61 95.1
Thhalv10020293m.g Eutrema salsugineum HOM05D003507 ORTHO05D004324 2.2e-22 109.0 61 93.4
BraA05t22670Z Brassica rapa HOM05D003507 ORTHO05D004324 2.9e-22 108.6 61 93.4
Carub.0003s0955 Capsella rubella HOM05D003507 ORTHO05D004324 6.5e-22 107.5 61 91.8
Sp3g08640 Schrenkiella parvula HOM05D003507 ORTHO05D004324 8.5e-22 107.1 61 91.8
CANSAT56G3424 Cannabis sativa HOM05D003507 ORTHO05D004324 1.1e-21 106.7 61 90.2
CARHR084850 Cardamine hirsuta HOM05D003507 ORTHO05D004324 1.1e-21 106.7 61 90.2
Dinv31230 Davidia involucrata HOM05D003507 ORTHO05D004324 1.1e-21 106.7 65 84.6
MD07G1170100 Malus domestica HOM05D003507 ORTHO05D004324 1.1e-21 106.7 65 84.6
MD07G1170200 Malus domestica HOM05D003507 ORTHO05D004324 1.1e-21 106.7 65 84.6
CiPaw.01G268800 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.9e-21 105.9 65 86.2
CiPaw.02G172300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.9e-21 105.9 61 90.2
Manes.07G133156 Manihot esculenta HOM05D003507 ORTHO05D004324 2.5e-21 105.5 65 84.6
Sabra10G0175000 Salix brachista HOM05D003507 ORTHO05D004324 3.2e-21 105.1 65 83.1
AT3G10370 Arabidopsis thaliana HOM05D003507 ORTHO05D004324 4.2e-21 104.8 61 90.2
C06p54060 Brassica napus HOM05D003507 ORTHO05D004324 4.2e-21 104.8 61 90.2
BolC6t40419H Brassica oleracea HOM05D003507 ORTHO05D004324 4.2e-21 104.8 61 90.2
Cc02_g10950 Coffea canephora HOM05D003507 ORTHO05D004324 4.2e-21 104.8 65 81.5
Haze_16857 Corylus avellana HOM05D003507 ORTHO05D004324 4.2e-21 104.8 65 84.6
Eucgr.G02866 Eucalyptus grandis HOM05D003507 ORTHO05D004324 4.2e-21 104.8 65 81.5
MD01G1103300 Malus domestica HOM05D003507 ORTHO05D004324 4.2e-21 104.8 65 83.1
RcHm_v2.0_Chr1g0362611 Rosa chinensis HOM05D003507 ORTHO05D004324 5.5e-21 104.4 65 81.5
GSVIVG01016222001 Vitis vinifera HOM05D003507 ORTHO05D004324 5.5e-21 104.4 85 67.1
MSTRG.9152 Avicennia marina HOM05D003507 ORTHO05D004324 7.2e-21 104.0 65 83.1
Cpa.g.sc3863.1 Carica papaya HOM05D003507 ORTHO05D004324 7.2e-21 104.0 61 88.5
Cfa001677 Carpinus fangiana HOM05D003507 ORTHO05D004324 7.2e-21 104.0 65 84.6
Potri.010G226700 Populus trichocarpa HOM05D003507 ORTHO05D004324 7.2e-21 104.0 65 81.5
Prupe.2G209000 Prunus persica HOM05D003507 ORTHO05D004324 7.2e-21 104.0 65 81.5
SalBow4G0138 Salvia bowleyana HOM05D003507 ORTHO05D004324 7.2e-21 104.0 65 81.5
Aa31LG1G21080 Aethionema arabicum HOM05D003507 ORTHO05D004324 9.4e-21 103.6 61 88.5
Glyma.02G165500 Glycine max HOM05D003507 ORTHO05D004324 9.4e-21 103.6 60 90.0
SGA_v2.0_scaffold62G21389 Striga asiatica HOM05D003507 ORTHO05D004324 9.4e-21 103.6 65 83.1
THA.LOC104816425 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 9.4e-21 103.6 61 86.9
unitig_88.g27816 Utricularia gibba HOM05D003507 ORTHO05D004324 9.4e-21 103.6 65 81.5
arahy.Tifrunner.gnm1.ann1.2YR0GK Arachis hypogaea HOM05D003507 ORTHO05D021543 1.2e-20 103.2 62 88.7
A01p41890 Brassica napus HOM05D003507 ORTHO05D004324 1.2e-20 103.2 61 88.5
BraA01t04259Z Brassica rapa HOM05D003507 ORTHO05D004324 1.2e-20 103.2 61 88.5
ClCG08G007670 Citrullus lanatus HOM05D003507 ORTHO05D004324 1.2e-20 103.2 61 86.9
MELO3C019820.2 Cucumis melo HOM05D003507 ORTHO05D004324 1.2e-20 103.2 61 86.9
CsaV3_6G036660 Cucumis sativus L. HOM05D003507 ORTHO05D004324 1.2e-20 103.2 61 86.9
Phvul.007G245200 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 1.2e-20 103.2 60 90.0
Rhsim03G0116200 Rhododendron simsii HOM05D003507 ORTHO05D004324 1.2e-20 103.2 65 80.0
Sed0023455 Sechium edule HOM05D003507 ORTHO05D004324 1.2e-20 103.2 61 85.2
VMungo0720G1021 Vigna mungo HOM05D003507 ORTHO05D004324 1.2e-20 103.2 60 90.0
BcaB04g21215 Brassica carinata HOM05D003507 ORTHO05D004324 1.6e-20 102.8 61 86.9
BcaC09g48101 Brassica carinata HOM05D003507 ORTHO05D004324 1.6e-20 102.8 61 86.9
BolC1t05405H Brassica oleracea HOM05D003507 ORTHO05D004324 1.6e-20 102.8 61 86.9
FvH4_7g18820 Fragaria vesca HOM05D003507 ORTHO05D004324 1.6e-20 102.8 65 80.0
Manes.10G050100 Manihot esculenta HOM05D003507 ORTHO05D004324 1.6e-20 102.8 65 84.6
QL08p054391 Quercus lobata HOM05D003507 ORTHO05D004324 1.6e-20 102.8 65 81.5
QL08p054526 Quercus lobata HOM05D003507 ORTHO05D004324 1.6e-20 102.8 65 81.5
SHI08893 Sapria himalayana HOM05D003507 ORTHO05D004324 1.6e-20 102.8 65 83.1
AL491U10020 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 2.1e-20 102.4 61 88.5
arahy.Tifrunner.gnm1.ann1.X5QL3X Arachis hypogaea HOM05D003507 ORTHO05D004324 2.1e-20 102.4 60 90.0
Oeu013840.1 Olea europaea HOM05D003507 ORTHO05D004324 2.1e-20 102.4 62 82.3
Thecc.10G083100 Theobroma cacao HOM05D003507 ORTHO05D004324 2.1e-20 102.4 61 85.2
vmacro07121 Vaccinium macrocarpon HOM05D003507 ORTHO05D004324 2.1e-20 102.4 65 80.0
ATR0219G019 Amborella trichopoda HOM05D003507 ORTHO05D004324 2.7e-20 102.1 88 62.5
A07p45220 Brassica napus HOM05D003507 ORTHO05D004324 2.7e-20 102.1 61 86.9
BraA07t32025Z Brassica rapa HOM05D003507 ORTHO05D004324 2.7e-20 102.1 61 86.9
ECA233G4141 Erigeron canadensis HOM05D003507 ORTHO05D004324 2.7e-20 102.1 63 82.5
FAN06G1568 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.7e-20 102.1 61 83.6
FAN06G2975 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.7e-20 102.1 61 83.6
Sed0010237 Sechium edule HOM05D003507 ORTHO05D004324 2.7e-20 102.1 61 85.2
THA.LOC104824233 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.7e-20 102.1 61 83.6
THA.LOC104826896 Tarenaya hassleriana HOM05D003507 ORTHO05D004324 2.7e-20 102.1 61 88.5
Actinidia18606 Actinidia chinensis HOM05D003507 ORTHO05D004324 3.6e-20 101.7 65 80.0
Gohir.A06G168100 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.6e-20 101.7 61 83.6
Gohir.D06G175500 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.6e-20 101.7 61 83.6
Gorai.010G205900 Gossypium raimondii HOM05D003507 ORTHO05D004324 3.6e-20 101.7 61 83.6
TWI38G0486 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 3.6e-20 101.7 65 76.9
COL.COLO4_17137 Corchorus olitorius HOM05D003507 ORTHO05D004324 4.7e-20 101.3 61 83.6
Migut.F01958 Erythranthe guttata HOM05D003507 ORTHO05D004324 4.7e-20 101.3 65 80.0
Nn2g13785 Nelumbo nucifera HOM05D003507 ORTHO05D004324 4.7e-20 101.3 61 83.6
Oeu051137.1 Olea europaea HOM05D003507 ORTHO05D004324 4.7e-20 101.3 61 82.0
Lsat_1_v5_gn_8_20780 Lactuca sativa HOM05D003507 ORTHO05D004324 6.1e-20 100.9 61 83.6
Dinv36393 Davidia involucrata HOM05D003507 ORTHO05D004324 8.0e-20 100.5 61 82.0
Duzib128G1288 Durio zibethinus HOM05D003507 ORTHO05D004324 8.0e-20 100.5 61 83.6
FAN01G0276 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.0e-20 100.5 65 78.5
FAN10G1468 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.0e-20 100.5 65 78.5
FAN10G2698 Fragaria x ananassa HOM05D003507 ORTHO05D004324 8.0e-20 100.5 65 78.5
HanXRQChr08g0218541 Helianthus annuus HOM05D003507 ORTHO05D004324 8.0e-20 100.5 65 78.5
Rhsim09G0148300 Rhododendron simsii HOM05D003507 ORTHO05D004324 8.0e-20 100.5 65 78.5
Hund22747 Selenicereus undatus HOM05D003507 ORTHO05D004324 8.0e-20 100.5 60 86.7
TWI63G0759 Tripterygium wilfordii HOM05D003507 ORTHO05D004324 8.0e-20 100.5 61 80.3
AL3G21700 Arabidopsis lyrata HOM05D003507 ORTHO05D004324 1.0e-19 100.1 60 88.3
CSS0014006 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.0e-19 100.1 61 82.0
CSS0018584 Camellia sinensis var. sinensis HOM05D003507 ORTHO05D004324 1.0e-19 100.1 61 82.0
Medtr1g050720 Medicago truncatula HOM05D003507 ORTHO05D004324 1.0e-19 100.1 61 80.3
CiPaw.14G115300 Carya illinoinensis HOM05D003507 ORTHO05D004324 1.4e-19 99.8 61 85.2
PSO210G4234 Papaver somniferum HOM05D003507 ORTHO05D004324 1.4e-19 99.8 65 76.9
TPR.G7608 Trifolium pratense HOM05D003507 ORTHO05D004324 1.4e-19 99.8 61 82.0
MSTRG.27484 Avicennia marina HOM05D003507 ORTHO05D004324 1.8e-19 99.4 61 83.6
Solyc11g008380.3 Solanum lycopersicum HOM05D003507 ORTHO05D004324 1.8e-19 99.4 61 80.3
FAN03G2323 Fragaria x ananassa HOM05D003507 ORTHO05D004324 2.3e-19 99.0 65 76.9
TAR623G1746 Trochodendron aralioides HOM05D003507 ORTHO05D004324 2.3e-19 99.0 61 82.0
Ca_11760_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 3.0e-19 98.6 61 83.6
PSO210G6851 Papaver somniferum HOM05D003507 ORTHO05D004324 3.0e-19 98.6 65 75.4
VMungo0720G1977 Vigna mungo HOM05D003507 ORTHO05D004324 3.0e-19 98.6 96 57.3
Duzib114G0668 Durio zibethinus HOM05D003507 ORTHO05D004324 4.0e-19 98.2 61 80.3
DCAR_019087 Daucus carota HOM05D003507 ORTHO05D004324 5.2e-19 97.8 60 85.0
Lalb_Chr02g0152061 Lupinus albus HOM05D003507 ORTHO05D004324 5.2e-19 97.8 61 82.0
RhsimUnG0185700 Rhododendron simsii HOM05D003507 ORTHO05D004324 5.2e-19 97.8 65 76.9
Nn6g35287 Nelumbo nucifera HOM05D003507 ORTHO05D004324 6.8e-19 97.4 61 82.0
Glyma.20G183100 Glycine max HOM05D003507 ORTHO05D004324 8.8e-19 97.1 61 82.0
Lj5g0027490 Lotus japonicus HOM05D003507 ORTHO05D004324 8.8e-19 97.1 61 80.3
MBI17_g46352_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 8.8e-19 97.1 65 76.9
PGR142G1627 Punica granatum HOM05D003507 ORTHO05D004324 8.8e-19 97.1 65 76.9
TPR.G38613 Trifolium pratense HOM05D003507 ORTHO05D004324 1.2e-18 96.7 62 77.4
MBI18_g28045_MAGBIO Magnolia biondii HOM05D003507 ORTHO05D004324 1.5e-18 96.3 60 83.3
Sc20g0001600 Simmondsia chinensis HOM05D003507 ORTHO05D004324 1.5e-18 96.3 58 79.3
Psat6g180000 Pisum sativum HOM05D003507 ORTHO05D004324 2.0e-18 95.9 61 78.7
Sc09g0006070 Simmondsia chinensis HOM05D003507 ORTHO05D004324 2.0e-18 95.9 60 78.3
Ca_10543_v3 Cicer arietinum L. HOM05D003507 ORTHO05D004324 2.6e-18 95.5 61 77.0
ECA232G4763 Erigeron canadensis HOM05D003507 ORTHO05D004324 2.6e-18 95.5 60 81.7
Phvul.007G099000 Phaseolus vulgaris HOM05D003507 ORTHO05D004324 2.6e-18 95.5 61 80.3
Pp3c4_15510 Physcomitrium patens HOM05D003507 ORTHO05D004324 2.6e-18 95.5 61 77.0
arahy.Tifrunner.gnm1.ann1.8GLB3P Arachis hypogaea HOM05D003507 ORTHO05D004324 3.4e-18 95.1 61 78.7
arahy.Tifrunner.gnm1.ann1.TAZB16 Arachis hypogaea HOM05D003507 ORTHO05D004324 3.4e-18 95.1 61 78.7
EL10Ac1g02015 Beta vulgaris HOM05D003507 ORTHO05D004324 4.4e-18 94.7 60 78.3
Gohir.A05G411300 Gossypium hirsutum HOM05D003507 ORTHO05D004324 5.7e-18 94.4 61 82.0
HanXRQChr17g0564181 Helianthus annuus HOM05D003507 ORTHO05D004324 7.5e-18 94.0 60 80.0
Aqoxy1G01151 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 9.8e-18 93.6 65 73.8
CDE02G2605 Ceratophyllum demersum HOM05D003507 ORTHO05D004324 9.8e-18 93.6 60 78.3
AUR62013829 Chenopodium quinoa HOM05D003507 ORTHO05D004324 9.8e-18 93.6 60 80.0
Mapoly0025s0008 Marchantia polymorpha HOM05D003507 ORTHO05D004324 9.8e-18 93.6 65 72.3
Glyma.10G207700 Glycine max HOM05D003507 ORTHO05D004324 1.3e-17 93.2 60 80.0
HPP92_008484 Vanilla planifolia HOM05D003507 ORTHO05D004324 1.3e-17 93.2 60 76.7
Zm00001eb419210 Zea mays HOM05D003507 ORTHO05D004324 1.3e-17 93.2 60 78.3
Os04g0225001 Oryza sativa ssp. japonica HOM05D003507 ORTHO05D021543 1.7e-17 92.8 66 72.7
Aqoxy1G02532 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.8e-17 92.0 60 76.7
Aqoxy1G02537 Aquilegia oxysepala HOM05D003507 ORTHO05D004324 2.8e-17 92.0 60 76.7
CBR_g49884 Chara braunii HOM05D003507 ORTHO05D000048 2.8e-17 92.0 59 79.7
Gohir.D04G004700 Gossypium hirsutum HOM05D003507 ORTHO05D004324 3.7e-17 91.7 61 80.3
Gorai.012G005900 Gossypium raimondii HOM05D003507 ORTHO05D004324 3.7e-17 91.7 61 80.3
Ah.11g040810 Amaranthus hybridus HOM05D003507 ORTHO05D004324 4.8e-17 91.3 60 78.3
AUR62036906 Chenopodium quinoa HOM05D003507 ORTHO05D004324 4.8e-17 91.3 60 78.3
SMO334G0124 Selaginella moellendorffii HOM05D003507 ORTHO05D004324 6.3e-17 90.9 61 73.8
Lalb_Chr01g0010251 Lupinus albus HOM05D003507 ORTHO05D021543 1.1e-16 90.1 60 81.7
BcaC05g29473 Brassica carinata HOM05D003507 ORTHO05D021543 1.8e-16 89.4 52 92.3
TAR627G0142 Trochodendron aralioides HOM05D003507 ORTHO05D004324 2.4e-16 89.0 88 56.8
PSO541G4906 Papaver somniferum HOM05D003507 ORTHO05D004324 5.4e-16 87.8 61 70.5
Peaxi162Scf00145g01313 Petunia axillaris HOM05D003507 ORTHO05D004324 5.4e-16 87.8 59 78.0
ATR0680G388 Amborella trichopoda HOM05D003507 ORTHO05D004324 2.7e-15 85.5 48 89.6
Cfa022775 Carpinus fangiana HOM05D003507 ORTHO05D004324 5.9e-15 84.3 60 68.3
AagrBONN_evm.TU.Sc2ySwM_117.1947 Anthoceros agrestis HOM05D003507 ORTHO05D004324 1.0e-14 83.6 60 68.3
CBR_g56910 Chara braunii HOM05D003507 ORTHO05D004324 2.2e-14 82.4 62 66.1
Nitab4.5_0001450g0180 Nicotiana tabacum HOM05D003507 ORTHO05D004324 2.9e-14 82.0 56 75.0
Lj2C20G5 Lonicera japonica HOM05D003507 ORTHO05D004324 7.2e-13 77.4 53 75.5
Pp3s42_220 Physcomitrium patens HOM05D003206 ORTHO05D310700 1.2e-12 76.6 53 67.9
Haze_26728 Corylus avellana HOM05D003507 ORTHO05D004324 3.6e-12 75.1 70 61.4
MCO16G042 Micromonas commoda HOM05D003507 ORTHO05D004324 1.0e-11 73.6 48 72.9
Lsat_1_v5_gn_9_70220 Lactuca sativa HOM05D003507 ORTHO05D004324 2.0e-10 69.3 38 92.1
BcaC01g03610 Brassica carinata HOM05D005057 ORTHO05D019871 1.3e-09 66.6 56 64.3
BolC5t30182H Brassica oleracea HOM05D019655 ORTHO05D032382 2.7e-07 58.9 54 63.0
Nitab4.5_0001659g0110 Nicotiana tabacum HOM05D003507 ORTHO05D004324 7.7e-07 57.4 53 58.5
Nn6g35718 Nelumbo nucifera HOM05D003507 ORTHO05D021543 8.6e-06 53.9 50 58.0


User provided reference genes

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