Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p06080 Brassica napus HOM05D002543 ORTHO05D041198 1.9e-89 332.4 164 100.0
BraA06t23821Z Brassica rapa HOM05D002543 ORTHO05D041198 5.8e-41 171.4 85 98.8
BcaC05g24788 Brassica carinata HOM05D002543 ORTHO05D002990 1.0e-37 160.6 132 67.4
A06p06060 Brassica napus HOM05D002543 ORTHO05D002990 1.0e-37 160.6 132 67.4
C05p07330 Brassica napus HOM05D002543 ORTHO05D002990 1.0e-37 160.6 132 67.4
BolC5t29491H Brassica oleracea HOM05D002543 ORTHO05D002990 1.0e-37 160.6 132 67.4
BraA06t23817Z Brassica rapa HOM05D002543 ORTHO05D002990 1.0e-37 160.6 132 67.4
Thhalv10007937m.g Eutrema salsugineum HOM05D002543 ORTHO05D002990 1.0e-37 160.6 132 67.4
Carub.0001s0868 Capsella rubella HOM05D002543 ORTHO05D002990 3.9e-37 158.7 132 66.7
BcaB07g34128 Brassica carinata HOM05D002543 ORTHO05D002990 5.0e-37 158.3 132 65.9
AT1G09340 Arabidopsis thaliana HOM05D002543 ORTHO05D002990 1.1e-36 157.1 132 65.9
CARHR009310 Cardamine hirsuta HOM05D002543 ORTHO05D002990 1.9e-36 156.4 132 65.2
Sp1g07950 Schrenkiella parvula HOM05D002543 ORTHO05D002990 3.3e-36 155.6 132 64.4
AL1G19830 Arabidopsis lyrata HOM05D002543 ORTHO05D002990 4.3e-36 155.2 132 64.4
A09p65530 Brassica napus HOM05D002543 ORTHO05D002990 1.6e-35 153.3 119 68.9
BraA09t41898Z Brassica rapa HOM05D002543 ORTHO05D002990 1.6e-35 153.3 119 68.9
Aa31LG1G5780 Aethionema arabicum HOM05D002543 ORTHO05D002990 2.1e-35 152.9 132 64.4
BcaC07g41896 Brassica carinata HOM05D002543 ORTHO05D002990 2.1e-35 152.9 118 68.6
CANSAT54G0111 Cannabis sativa HOM05D002543 ORTHO05D002990 2.1e-35 152.9 132 63.6
Aqoxy7G03338 Aquilegia oxysepala HOM05D002543 ORTHO05D002990 2.8e-35 152.5 132 62.1
THA.LOC104816855 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 1.1e-34 150.6 132 62.9
SGA_v2.0_scaffold5G02903 Striga asiatica HOM05D002543 ORTHO05D002990 1.4e-34 150.2 132 61.4
Prupe.6G309500 Prunus persica HOM05D002543 ORTHO05D002990 1.8e-34 149.8 132 59.8
Gohir.A11G274700 Gossypium hirsutum HOM05D002543 ORTHO05D002990 2.3e-34 149.4 132 60.6
THA.LOC104820540 Tarenaya hassleriana HOM05D002543 ORTHO05D002990 3.1e-34 149.1 132 61.4
Atru.chr2.231 Acer truncatum HOM05D002543 ORTHO05D002990 5.2e-34 148.3 132 59.8
COL.COLO4_05521 Corchorus olitorius HOM05D002543 ORTHO05D002990 6.8e-34 147.9 132 59.8
BcaC07g41892 Brassica carinata HOM05D002543 ORTHO05D002990 8.9e-34 147.5 126 66.7
Gohir.D11G284900 Gossypium hirsutum HOM05D002543 ORTHO05D002990 8.9e-34 147.5 132 59.8
Gorai.007G308300 Gossypium raimondii HOM05D002543 ORTHO05D002990 8.9e-34 147.5 132 59.8
SalBow7G2281 Salvia bowleyana HOM05D002543 ORTHO05D002990 8.9e-34 147.5 132 59.8
Ciclev10001494m.g Citrus clementina HOM05D002543 ORTHO05D002990 1.2e-33 147.1 148 56.1
Nitab4.5_0006914g0020 Nicotiana tabacum HOM05D002543 ORTHO05D002990 1.2e-33 147.1 132 57.6
CAN.G65.169 Capsicum annuum HOM05D002543 ORTHO05D002990 2.0e-33 146.4 131 61.1
Glyma.19G227700 Glycine max HOM05D002543 ORTHO05D002990 2.0e-33 146.4 131 60.3
Peaxi162Scf00413g00612 Petunia axillaris HOM05D002543 ORTHO05D002990 2.0e-33 146.4 132 57.6
Duzib177G1067 Durio zibethinus HOM05D002543 ORTHO05D002990 2.6e-33 146.0 132 60.6
Eucgr.H03311 Eucalyptus grandis HOM05D002543 ORTHO05D002990 3.4e-33 145.6 132 59.1
Os12g0420200 Oryza sativa ssp. japonica HOM05D002543 ORTHO05D002990 3.4e-33 145.6 132 59.1
Sopen06g029620 Solanum pennellii HOM05D002543 ORTHO05D002990 3.4e-33 145.6 131 58.8
PGSC0003DMG400026913 Solanum tuberosum HOM05D002543 ORTHO05D002990 3.4e-33 145.6 131 58.8
Cc02_g35140 Coffea canephora HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 56.8
Haze_04051 Corylus avellana HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 56.8
Migut.N00952 Erythranthe guttata HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 59.1
FvH4_6g07910 Fragaria vesca HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 59.1
FAN05G0666 Fragaria x ananassa HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 59.1
FAN09G0299 Fragaria x ananassa HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 59.1
FAN14G2557 Fragaria x ananassa HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 59.1
PGR031G1645 Punica granatum HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 56.8
RcHm_v2.0_Chr3g0457611 Rosa chinensis HOM05D002543 ORTHO05D002990 4.4e-33 145.2 132 58.3
Solyc06g073260.3 Solanum lycopersicum HOM05D002543 ORTHO05D002990 4.4e-33 145.2 131 60.3
Manes.09G179000 Manihot esculenta HOM05D002543 ORTHO05D002990 5.8e-33 144.8 132 59.1
Medtr7g111860 Medicago truncatula HOM05D002543 ORTHO05D002990 7.5e-33 144.4 131 58.8
VMungo1383G0020 Vigna mungo HOM05D002543 ORTHO05D002990 7.5e-33 144.4 131 60.3
MSTRG.5153 Avicennia marina HOM05D002543 ORTHO05D002990 9.8e-33 144.1 132 57.6
Nitab4.5_0002084g0070 Nicotiana tabacum HOM05D002543 ORTHO05D002990 1.3e-32 143.7 128 57.8
Phvul.001G223800 Phaseolus vulgaris HOM05D002543 ORTHO05D002990 1.3e-32 143.7 131 58.0
QL03p017109 Quercus lobata HOM05D002543 ORTHO05D002990 1.3e-32 143.7 132 56.8
QL03p017392 Quercus lobata HOM05D002543 ORTHO05D002990 1.3e-32 143.7 132 56.8
Thecc.05G326100 Theobroma cacao HOM05D002543 ORTHO05D002990 1.3e-32 143.7 132 59.8
HanXRQChr13g0388191 Helianthus annuus HOM05D002543 ORTHO05D002990 1.7e-32 143.3 132 58.3
Lju99A11T81 Lonicera japonica HOM05D002543 ORTHO05D002990 1.7e-32 143.3 132 58.3
Sed0006506 Sechium edule HOM05D002543 ORTHO05D002990 1.7e-32 143.3 132 56.1
TWI56G1324 Tripterygium wilfordii HOM05D002543 ORTHO05D002990 1.7e-32 143.3 132 58.3
Cfa006711 Carpinus fangiana HOM05D002543 ORTHO05D002990 2.2e-32 142.9 132 56.1
ECA248G3036 Erigeron canadensis HOM05D002543 ORTHO05D002990 2.2e-32 142.9 132 58.3
MBI19_g32691_MAGBIO Magnolia biondii HOM05D002543 ORTHO05D002990 2.2e-32 142.9 123 60.2
CiPaw.07G031800 Carya illinoinensis HOM05D002543 ORTHO05D002990 2.9e-32 142.5 132 58.3
FAN02G0698 Fragaria x ananassa HOM05D002543 ORTHO05D002990 2.9e-32 142.5 132 58.3
MD12G1203600 Malus domestica HOM05D002543 ORTHO05D002990 2.9e-32 142.5 132 56.1
GSVIVG01031272001 Vitis vinifera HOM05D002543 ORTHO05D002990 2.9e-32 142.5 132 57.6
Lj1g0015240 Lotus japonicus HOM05D002543 ORTHO05D002990 3.7e-32 142.1 131 57.3
Psat3g014320 Pisum sativum HOM05D002543 ORTHO05D002990 3.7e-32 142.1 131 58.0
Rhsim11G0098700 Rhododendron simsii HOM05D002543 ORTHO05D002990 3.7e-32 142.1 132 59.1
Sabra13G0005200 Salix brachista HOM05D002543 ORTHO05D002990 3.7e-32 142.1 132 57.6
Hund21861 Selenicereus undatus HOM05D002543 ORTHO05D002990 3.7e-32 142.1 132 57.6
TPR.G1672 Trifolium pratense HOM05D002543 ORTHO05D002990 3.7e-32 142.1 131 58.0
MSTRG.27925 Avicennia marina HOM05D002543 ORTHO05D002990 4.9e-32 141.7 132 56.8
Cpa.g.sc48.194 Carica papaya HOM05D002543 ORTHO05D002990 4.9e-32 141.7 132 59.1
PSO761G0053 Papaver somniferum HOM05D002543 ORTHO05D002990 4.9e-32 141.7 132 57.6
ClCG01G010830 Citrullus lanatus HOM05D002543 ORTHO05D002990 6.4e-32 141.4 132 56.8
unitig_749.g13404 Utricularia gibba HOM05D002543 ORTHO05D002990 6.4e-32 141.4 132 56.1
EL10Ac4g09505 Beta vulgaris HOM05D002543 ORTHO05D002990 8.3e-32 141.0 129 58.9
vmacro01588 Vaccinium macrocarpon HOM05D002543 ORTHO05D002990 8.3e-32 141.0 132 57.6
Glyma.03G230000 Glycine max HOM05D002543 ORTHO05D002990 1.1e-31 140.6 131 56.5
MD04G1191000 Malus domestica HOM05D002543 ORTHO05D002990 1.1e-31 140.6 132 55.3
Oeu064827.1 Olea europaea HOM05D002543 ORTHO05D002990 1.1e-31 140.6 126 60.3
Actinidia16883 Actinidia chinensis HOM05D002543 ORTHO05D002990 1.4e-31 140.2 133 57.9
CSS0021124 Camellia sinensis var. sinensis HOM05D002543 ORTHO05D002990 1.4e-31 140.2 133 56.4
Zm00001eb261910 Zea mays HOM05D002543 ORTHO05D002990 1.4e-31 140.2 134 58.2
PSO210G0417 Papaver somniferum HOM05D002543 ORTHO05D002990 1.9e-31 139.8 132 56.8
C08p49510 Brassica napus HOM05D002543 ORTHO05D002990 2.4e-31 139.4 127 62.2
Nn3g21830 Nelumbo nucifera HOM05D002543 ORTHO05D002990 2.4e-31 139.4 133 56.4
Potri.013G006100 Populus trichocarpa HOM05D002543 ORTHO05D002990 2.4e-31 139.4 132 57.6
Lalb_Chr04g0260351 Lupinus albus HOM05D002543 ORTHO05D002990 3.2e-31 139.0 129 57.4
BcaC07g41887 Brassica carinata HOM05D002543 ORTHO05D002990 4.1e-31 138.7 135 61.5
BcaB04g17721 Brassica carinata HOM05D002543 ORTHO05D002990 5.4e-31 138.3 140 55.0
Ca_09289_v3 Cicer arietinum L. HOM05D002543 ORTHO05D002990 5.4e-31 138.3 131 55.7
Dinv30917 Davidia involucrata HOM05D002543 ORTHO05D002990 5.4e-31 138.3 132 55.3
Hma1.2p1_0008F-1.1_g005360 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 5.4e-31 138.3 132 55.3
Hma1.2p1_1808F.1_g303465 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 5.4e-31 138.3 132 55.3
ATR0693G343 Amborella trichopoda HOM05D002543 ORTHO05D002990 1.2e-30 137.1 133 55.6
Potri.005G010266 Populus trichocarpa HOM05D002543 ORTHO05D002990 1.2e-30 137.1 132 57.6
arahy.Tifrunner.gnm1.ann1.GJPT5D Arachis hypogaea HOM05D002543 ORTHO05D002990 1.6e-30 136.7 130 56.2
CsaV3_4G030580 Cucumis sativus L. HOM05D002543 ORTHO05D002990 1.6e-30 136.7 126 56.3
Lsat_1_v5_gn_5_157440 Lactuca sativa HOM05D002543 ORTHO05D002990 1.6e-30 136.7 132 56.1
CDE02G1117 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 2.1e-30 136.3 133 54.9
CDE08G1278 Ceratophyllum demersum HOM05D002543 ORTHO05D002990 2.1e-30 136.3 132 53.8
HanXRQChr01g0008121 Helianthus annuus HOM05D002543 ORTHO05D002990 2.1e-30 136.3 132 55.3
TAR362G1343 Trochodendron aralioides HOM05D002543 ORTHO05D002990 3.5e-30 135.6 133 55.6
Mapoly0014s0058 Marchantia polymorpha HOM05D002543 ORTHO05D002990 6.0e-30 134.8 129 54.3
DCAR_005274 Daucus carota HOM05D002543 ORTHO05D002990 1.7e-29 133.3 132 55.3
Ah.04g158450 Amaranthus hybridus HOM05D002543 ORTHO05D002990 6.6e-29 131.3 130 53.8
BcaC07g41890 Brassica carinata HOM05D002543 ORTHO05D002990 8.6e-29 131.0 124 62.1
AUR62006776 Chenopodium quinoa HOM05D002543 ORTHO05D002990 4.3e-28 128.6 130 53.8
AUR62000430 Chenopodium quinoa HOM05D002543 ORTHO05D002990 9.5e-28 127.5 130 53.1
AagrBONN_evm.TU.Sc2ySwM_117.679 Anthoceros agrestis HOM05D002543 ORTHO05D002990 1.6e-27 126.7 128 55.5
Pp3c22_14530 Physcomitrium patens HOM05D002543 ORTHO05D002990 6.8e-26 121.3 128 53.9
Hma1.2p1_0045F.1_g026490 Hydrangea macrophylla HOM05D002543 ORTHO05D002990 8.9e-26 120.9 133 51.1
SMO169G0181 Selaginella moellendorffii HOM05D002543 ORTHO05D002990 4.4e-25 118.6 128 53.1
Cre10.g435800 Chlamydomonas reinhardtii HOM05D002543 ORTHO05D002990 9.9e-25 117.5 130 47.7
CBR_g216 Chara braunii HOM05D002543 ORTHO05D002990 8.3e-24 114.4 128 51.6
Dinv30918 Davidia involucrata HOM05D002543 ORTHO05D002990 2.4e-23 112.8 133 49.6
BcaB01g02330 Brassica carinata HOM05D003555 ORTHO05D002990 4.1e-23 112.1 79 69.6
arahy.Tifrunner.gnm1.ann1.E4P10T Arachis hypogaea HOM05D002543 ORTHO05D002990 6.0e-22 108.2 131 47.3
MELO3C008920.2 Cucumis melo HOM05D002543 ORTHO05D002990 6.0e-22 108.2 68 73.5
Actinidia27688 Actinidia chinensis HOM05D002543 ORTHO05D002990 6.6e-21 104.8 68 72.1
HanXRQChr03g0066731 Helianthus annuus HOM05D002543 ORTHO05D002990 1.2e-19 100.5 92 54.3
HPP92_017019 Vanilla planifolia HOM05D002543 ORTHO05D002990 2.1e-19 99.8 68 66.2
Pp3c19_13480 Physcomitrium patens HOM05D002543 ORTHO05D002990 2.9e-16 89.4 123 46.3
BraA06t23819Z Brassica rapa HOM05D013769 ORTHO05D016089 5.4e-15 85.1 36 100.0
Manes.16G048915 Manihot esculenta HOM05D002543 ORTHO05D002990 9.6e-12 74.3 88 46.6
A04p11440 Brassica napus HOM05D013769 ORTHO05D016089 2.1e-11 73.2 36 88.9
BcaC02g12651 Brassica carinata HOM05D003555 ORTHO05D095367 1.6e-06 57.0 97 38.1


User provided reference genes

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