Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
A06p01180 Brassica napus HOM05D000042 ORTHO05D020036 2.6e-90 335.5 186 100.0
BraA06t23345Z Brassica rapa HOM05D000042 ORTHO05D020036 4.5e-74 281.6 205 80.0
BcaC08g43503 Brassica carinata HOM05D000042 ORTHO05D020036 4.4e-45 185.3 172 65.7
C06p08840 Brassica napus HOM05D000042 ORTHO05D020036 4.1e-43 178.7 192 61.5
BolC6t35967H Brassica oleracea HOM05D000042 ORTHO05D020036 1.6e-39 166.8 114 82.5
C08p32790 Brassica napus HOM05D000042 ORTHO05D000028 1.4e-35 153.7 258 46.5
BolC8t50890H Brassica oleracea HOM05D000042 ORTHO05D000028 1.4e-35 153.7 258 46.5
A09p50280 Brassica napus HOM05D000042 ORTHO05D000028 1.8e-35 153.3 258 47.7
BraA09t40479Z Brassica rapa HOM05D000042 ORTHO05D000028 1.8e-35 153.3 258 47.7
BraA04t16037Z Brassica rapa HOM05D000042 ORTHO05D000028 4.1e-35 152.1 261 46.4
BcaB02g08318 Brassica carinata HOM05D000042 ORTHO05D000028 9.1e-35 151.0 260 46.5
Sp5g05210 Schrenkiella parvula HOM05D000042 ORTHO05D000028 4.5e-34 148.7 258 45.3
C04p35030 Brassica napus HOM05D000042 ORTHO05D000028 5.9e-34 148.3 261 46.4
BcaB02g07609 Brassica carinata HOM05D000042 ORTHO05D000028 7.7e-34 147.9 259 46.3
BcaC02g09933 Brassica carinata HOM05D000042 ORTHO05D000028 7.7e-34 147.9 261 46.4
BolC4t25060H Brassica oleracea HOM05D000042 ORTHO05D000028 1.0e-33 147.5 261 46.4
A07p23370 Brassica napus HOM05D000042 ORTHO05D000028 9.4e-32 141.0 258 46.5
BraA07t30002Z Brassica rapa HOM05D000042 ORTHO05D000028 9.4e-32 141.0 258 46.5
BolC6t35962H Brassica oleracea HOM05D000042 ORTHO05D020036 1.8e-30 136.7 88 84.1
A04p03160 Brassica napus HOM05D000042 ORTHO05D000028 3.0e-30 136.0 285 41.4
C06p24440 Brassica napus HOM05D000042 ORTHO05D000028 6.8e-30 134.8 258 44.2
BolC6t37591H Brassica oleracea HOM05D000042 ORTHO05D000028 6.8e-30 134.8 258 44.2
AT3G57390 Arabidopsis thaliana HOM05D000042 ORTHO05D000028 8.8e-30 134.4 258 42.6
AL5G38920 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 9.8e-29 131.0 257 42.0
Carub.0005s2423 Capsella rubella HOM05D000042 ORTHO05D000028 3.1e-27 125.9 257 40.9
BcaC08g44836 Brassica carinata HOM05D000042 ORTHO05D000028 4.1e-27 125.6 230 44.3
BcaC07g40392 Brassica carinata HOM05D000042 ORTHO05D000028 2.7e-26 122.9 271 41.7
Thhalv10006251m.g Eutrema salsugineum HOM05D000042 ORTHO05D000028 2.7e-26 122.9 159 53.5
Aa31LG10G12220 Aethionema arabicum HOM05D000042 ORTHO05D000028 1.1e-24 117.5 143 53.1
C06p08880 Brassica napus HOM05D000042 ORTHO05D020036 3.6e-23 112.5 123 57.7
THA.LOC104824433 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.4e-22 110.5 256 36.3
THA.LOC104817587 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 4.1e-19 99.0 194 40.2
Dinv39623 Davidia involucrata HOM05D000042 ORTHO05D000028 2.7e-18 96.3 237 37.6
Ciclev10005698m.g Citrus clementina HOM05D000042 ORTHO05D000028 1.9e-16 90.1 254 34.3
Atru.chr1.1136 Acer truncatum HOM05D000042 ORTHO05D000028 3.3e-16 89.4 247 35.2
MSTRG.6418 Avicennia marina HOM05D000042 ORTHO05D000028 2.8e-15 86.3 235 34.0
Duzib093G0336 Durio zibethinus HOM05D000042 ORTHO05D000028 8.0e-15 84.7 253 35.6
TWI77G0779 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 1.4e-14 84.0 216 36.1
Cfa016796 Carpinus fangiana HOM05D000042 ORTHO05D000028 4.0e-14 82.4 248 33.5
Manes.09G019300 Manihot esculenta HOM05D000042 ORTHO05D000028 4.0e-14 82.4 256 32.4
CSS0023376 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 5.2e-14 82.0 232 35.8
Duzib106G1526 Durio zibethinus HOM05D000042 ORTHO05D000028 5.2e-14 82.0 216 36.1
CiPaw.09G039300 Carya illinoinensis HOM05D000042 ORTHO05D000028 1.2e-13 80.9 247 33.2
THA.LOC104804844 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 1.2e-13 80.9 194 35.6
Ah.10g038550 Amaranthus hybridus HOM05D000042 ORTHO05D000028 1.5e-13 80.5 186 38.7
Duzib128G0515 Durio zibethinus HOM05D000042 ORTHO05D000028 1.5e-13 80.5 176 38.6
Lju124C44T12 Lonicera japonica HOM05D000042 ORTHO05D000028 2.0e-13 80.1 180 35.0
Psat6g113320 Pisum sativum HOM05D000042 ORTHO05D000028 2.6e-13 79.7 232 31.9
MSTRG.19853 Avicennia marina HOM05D000042 ORTHO05D000028 4.4e-13 79.0 219 32.9
Lalb_Chr21g0316521 Lupinus albus HOM05D000042 ORTHO05D000028 4.4e-13 79.0 233 35.2
Nn2g15187 Nelumbo nucifera HOM05D000042 ORTHO05D000028 5.8e-13 78.6 175 39.4
Lj5g0007892 Lotus japonicus HOM05D000042 ORTHO05D000028 9.8e-13 77.8 231 34.2
BcaB05g23180 Brassica carinata HOM05D000042 ORTHO05D000028 1.3e-12 77.4 65 69.2
Glyma.02G185500 Glycine max HOM05D000042 ORTHO05D000028 1.3e-12 77.4 235 32.3
Potri.006G048700 Populus trichocarpa HOM05D000042 ORTHO05D000028 1.3e-12 77.4 249 32.9
ECA247G0313 Erigeron canadensis HOM05D000042 ORTHO05D000028 2.2e-12 76.6 144 36.1
EL10Ac2g04380 Beta vulgaris HOM05D000042 ORTHO05D000028 2.9e-12 76.3 186 37.1
Gorai.007G360800 Gossypium raimondii HOM05D000042 ORTHO05D000028 2.9e-12 76.3 182 36.8
MD00G1106300 Malus domestica HOM05D000042 ORTHO05D000028 3.7e-12 75.9 257 32.7
Thecc.05G150100 Theobroma cacao HOM05D000042 ORTHO05D000028 3.7e-12 75.9 180 35.6
VMungo0720G3184 Vigna mungo HOM05D000042 ORTHO05D000028 3.7e-12 75.9 236 32.6
Cc06_g17700 Coffea canephora HOM05D000042 ORTHO05D000028 4.9e-12 75.5 233 33.9
Gohir.D11G329600 Gossypium hirsutum HOM05D000042 ORTHO05D000028 6.4e-12 75.1 182 36.3
Medtr1g053070 Medicago truncatula HOM05D000042 ORTHO05D000028 6.4e-12 75.1 253 32.8
Aqoxy1G00318 Aquilegia oxysepala HOM05D000042 ORTHO05D000028 8.3e-12 74.7 171 37.4
SGA_v2.0_scaffold69G23122 Striga asiatica HOM05D000042 ORTHO05D000028 8.3e-12 74.7 218 33.5
A08p12830 Brassica napus HOM05D000042 ORTHO05D103464 1.1e-11 74.3 71 64.8
TAR636G0038 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.1e-11 74.3 175 38.3
TWI09G1037 Tripterygium wilfordii HOM05D000042 ORTHO05D000028 1.4e-11 73.9 250 34.0
Lj3g0001475 Lotus japonicus HOM05D000042 ORTHO05D000028 1.9e-11 73.6 165 37.6
QL04p010447 Quercus lobata HOM05D000042 ORTHO05D000028 1.9e-11 73.6 239 31.4
Ah.16g100680 Amaranthus hybridus HOM05D000042 ORTHO05D000028 2.4e-11 73.2 185 36.2
MELO3C024001.2 Cucumis melo HOM05D000042 ORTHO05D000028 2.4e-11 73.2 135 40.0
PGR004G1335 Punica granatum HOM05D000042 ORTHO05D000028 2.4e-11 73.2 178 34.3
QL07p001582 Quercus lobata HOM05D000042 ORTHO05D000028 2.4e-11 73.2 262 30.5
Lalb_Chr19g0140231 Lupinus albus HOM05D000042 ORTHO05D000028 3.2e-11 72.8 172 36.0
CSS0039724 Camellia sinensis var. sinensis HOM05D000042 ORTHO05D000028 4.1e-11 72.4 231 34.2
Cfa010822 Carpinus fangiana HOM05D000042 ORTHO05D000028 4.1e-11 72.4 247 31.6
Eucgr.G03284 Eucalyptus grandis HOM05D000042 ORTHO05D000028 5.4e-11 72.0 191 35.6
Peaxi162Scf00130g00423 Petunia axillaris HOM05D000042 ORTHO05D000028 5.4e-11 72.0 213 33.8
GSVIVG01033253001 Vitis vinifera HOM05D000042 ORTHO05D000028 5.4e-11 72.0 179 35.8
HanXRQChr10g0299591 Helianthus annuus HOM05D000042 ORTHO05D000028 7.0e-11 71.6 181 32.6
CANSAT80G1550 Cannabis sativa HOM05D000042 ORTHO05D000028 9.2e-11 71.2 172 37.8
CsaV3_4G028880 Cucumis sativus L. HOM05D000042 ORTHO05D000028 9.2e-11 71.2 181 32.0
Atru.chr11.2528 Acer truncatum HOM05D000042 ORTHO05D000028 1.2e-10 70.9 175 33.7
Sed0024257 Sechium edule HOM05D000042 ORTHO05D000028 1.2e-10 70.9 182 34.1
Lsat_1_v5_gn_9_31261 Lactuca sativa HOM05D000042 ORTHO05D000028 1.6e-10 70.5 182 29.7
Phvul.007G251600 Phaseolus vulgaris HOM05D000042 ORTHO05D000028 1.6e-10 70.5 235 31.5
PGR031G1523 Punica granatum HOM05D000042 ORTHO05D000028 1.6e-10 70.5 179 36.9
PSO339G2047 Papaver somniferum HOM05D000042 ORTHO05D000028 2.0e-10 70.1 186 34.4
PSO384G4921 Papaver somniferum HOM05D000042 ORTHO05D000028 3.5e-10 69.3 249 32.1
THA.LOC104826694 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 4.6e-10 68.9 174 35.1
MSTRG.5045 Avicennia marina HOM05D000042 ORTHO05D000028 6.0e-10 68.6 172 34.9
AUR62023102 Chenopodium quinoa HOM05D000042 ORTHO05D000028 7.8e-10 68.2 186 35.5
AUR62009424 Chenopodium quinoa HOM05D000042 ORTHO05D000028 1.0e-09 67.8 186 35.5
COL.COLO4_20029 Corchorus olitorius HOM05D000042 ORTHO05D000028 1.0e-09 67.8 172 33.7
HPP92_027306 Vanilla planifolia HOM05D000042 ORTHO05D000028 1.0e-09 67.8 205 30.2
arahy.Tifrunner.gnm1.ann1.BJW67H Arachis hypogaea HOM05D000042 ORTHO05D000028 1.3e-09 67.4 169 35.5
Ca_26441_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 2.3e-09 66.6 173 32.4
Lalb_Chr01g0000501 Lupinus albus HOM05D000042 ORTHO05D000028 2.3e-09 66.6 173 35.8
MBI17_g18123_MAGBIO Magnolia biondii HOM05D000042 ORTHO05D000028 2.3e-09 66.6 175 35.4
Sabra06G0034000 Salix brachista HOM05D000042 ORTHO05D000028 2.3e-09 66.6 157 35.7
Actinidia23254 Actinidia chinensis HOM05D000042 ORTHO05D000028 3.0e-09 66.2 173 34.1
Manes.10G135400 Manihot esculenta HOM05D000042 ORTHO05D000028 3.0e-09 66.2 173 34.1
arahy.Tifrunner.gnm1.ann1.XIQ273 Arachis hypogaea HOM05D000042 ORTHO05D000028 5.0e-09 65.5 169 34.9
BcaC04g24253 Brassica carinata HOM05D000042 ORTHO05D000028 5.0e-09 65.5 173 34.7
Medtr0003s0590 Medicago truncatula HOM05D000042 ORTHO05D000028 5.0e-09 65.5 176 31.8
FAN01G3037 Fragaria x ananassa HOM05D000042 ORTHO05D000028 6.6e-09 65.1 176 35.2
Migut.N01802 Erythranthe guttata HOM05D000042 ORTHO05D000028 8.6e-09 64.7 172 33.1
SGA_v2.0_scaffold105G30399 Striga asiatica HOM05D027860 ORTHO05D000028 8.6e-09 64.7 124 37.1
AL6G24410 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 1.1e-08 64.3 167 35.9
AT5G13790 Arabidopsis thaliana HOM05D000042 ORTHO05D000028 1.1e-08 64.3 170 32.9
Cpa.g.c37200 Carica papaya HOM05D000042 ORTHO05D000028 1.5e-08 63.9 86 43.0
Gorai.008G112400 Gossypium raimondii HOM05D000042 ORTHO05D000028 1.5e-08 63.9 175 32.6
Prupe.7G055900 Prunus persica HOM05D000042 ORTHO05D000028 1.5e-08 63.9 131 39.7
Cfa016798 Carpinus fangiana HOM05D000042 ORTHO05D000028 1.9e-08 63.5 79 45.6
Duzib205G1316 Durio zibethinus HOM05D000042 ORTHO05D000028 2.5e-08 63.2 212 33.5
Gohir.D11G330500 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.5e-08 63.2 85 47.1
Ah.12g057810 Amaranthus hybridus HOM05D000042 ORTHO05D000028 4.3e-08 62.4 158 33.5
Solyc01g087990.3 Solanum lycopersicum HOM05D000042 ORTHO05D000028 4.3e-08 62.4 189 31.2
Ca_27021_v3 Cicer arietinum L. HOM05D000042 ORTHO05D000028 5.6e-08 62.0 140 36.4
MELO3C019192.2 Cucumis melo HOM05D000042 ORTHO05D000028 5.6e-08 62.0 172 30.2
Sopen10g030640 Solanum pennellii HOM05D000042 ORTHO05D000028 5.6e-08 62.0 215 31.6
Gohir.A03G013350 Gossypium hirsutum HOM05D000042 ORTHO05D000028 7.3e-08 61.6 218 29.4
A10p24560 Brassica napus HOM05D000042 ORTHO05D000028 9.5e-08 61.2 175 33.7
BraA10t44520Z Brassica rapa HOM05D000042 ORTHO05D000028 9.5e-08 61.2 175 33.7
Carub.0006s1197 Capsella rubella HOM05D000042 ORTHO05D000028 1.2e-07 60.8 167 35.3
TAR633G2262 Trochodendron aralioides HOM05D000042 ORTHO05D000028 1.2e-07 60.8 174 31.6
BolC9t59168H Brassica oleracea HOM05D000042 ORTHO05D000028 1.6e-07 60.5 175 33.1
ATR0721G107 Amborella trichopoda HOM05D000042 ORTHO05D000028 2.1e-07 60.1 158 35.4
BcaB01g05337 Brassica carinata HOM05D000042 ORTHO05D000028 2.1e-07 60.1 174 33.3
C03p07180 Brassica napus HOM05D000042 ORTHO05D000028 2.1e-07 60.1 174 33.9
BolC3t13219H Brassica oleracea HOM05D000042 ORTHO05D000028 2.1e-07 60.1 175 33.7
ClCG04G003520 Citrullus lanatus HOM05D000042 ORTHO05D000028 2.1e-07 60.1 161 32.9
Nn7g36342 Nelumbo nucifera HOM05D000042 ORTHO05D000028 2.1e-07 60.1 175 32.6
BcaC04g19080 Brassica carinata HOM05D000042 ORTHO05D000028 2.8e-07 59.7 175 32.6
C09p63310 Brassica napus HOM05D000042 ORTHO05D000028 2.8e-07 59.7 175 32.6
CARHR199650 Cardamine hirsuta HOM05D000042 ORTHO05D000028 2.8e-07 59.7 168 32.7
Migut.O00954 Erythranthe guttata HOM05D027860 ORTHO05D000028 2.8e-07 59.7 76 43.4
Sp6g30230 Schrenkiella parvula HOM05D000042 ORTHO05D000028 2.8e-07 59.7 174 33.3
Solyc10g080030.2 Solanum lycopersicum HOM05D000042 ORTHO05D000028 2.8e-07 59.7 215 32.1
A03p06170 Brassica napus HOM05D000042 ORTHO05D000028 3.6e-07 59.3 175 33.7
BraA03t09951Z Brassica rapa HOM05D000042 ORTHO05D000028 3.6e-07 59.3 175 33.7
Sed0006178 Sechium edule HOM05D000042 ORTHO05D000028 3.6e-07 59.3 212 32.1
AUR62033383 Chenopodium quinoa HOM05D000042 ORTHO05D000028 4.7e-07 58.9 159 30.8
Sed0025694 Sechium edule HOM05D000042 ORTHO05D000028 6.2e-07 58.5 153 35.3
EL10Ac3g07106 Beta vulgaris HOM05D000042 ORTHO05D000028 8.0e-07 58.2 182 31.9
Sopen01g034890 Solanum pennellii HOM05D000042 ORTHO05D000028 1.8e-06 57.0 183 31.7
Ciclev10032519m.g Citrus clementina HOM05D000042 ORTHO05D000028 2.3e-06 56.6 175 32.0
Gohir.D03G156200 Gossypium hirsutum HOM05D000042 ORTHO05D000028 2.3e-06 56.6 218 29.4
Gorai.003G163900 Gossypium raimondii HOM05D000042 ORTHO05D000028 2.3e-06 56.6 218 29.4
Lalb_Chr04g0263791 Lupinus albus HOM05D000042 ORTHO05D000028 2.3e-06 56.6 169 32.0
Peaxi162Scf00013g00725 Petunia axillaris HOM05D000042 ORTHO05D000028 2.3e-06 56.6 159 29.6
Carub.0006s3096 Capsella rubella HOM05D000042 ORTHO05D000028 3.1e-06 56.2 205 28.8
CAN.G1665.3 Capsicum annuum HOM05D000042 ORTHO05D000028 3.1e-06 56.2 203 30.5
Sabra09G0040800 Salix brachista HOM05D000042 ORTHO05D000028 3.1e-06 56.2 186 31.7
AL6G46600 Arabidopsis lyrata HOM05D000042 ORTHO05D000028 4.0e-06 55.8 200 28.0
Oeu062942.1 Olea europaea HOM05D000042 ORTHO05D000028 4.0e-06 55.8 173 29.5
SalBow6G2376 Salvia bowleyana HOM05D027860 ORTHO05D000028 5.2e-06 55.5 80 37.5
PGSC0003DMG401006771 Solanum tuberosum HOM05D000042 ORTHO05D000028 5.2e-06 55.5 183 31.7
THA.LOC104808253 Tarenaya hassleriana HOM05D000042 ORTHO05D000980 5.2e-06 55.5 168 29.2
MD07G1022500 Malus domestica HOM05D000042 ORTHO05D000028 6.8e-06 55.1 204 28.9
THA.LOC104819107 Tarenaya hassleriana HOM05D000042 ORTHO05D000028 6.8e-06 55.1 186 30.1
Thecc.03G268400 Theobroma cacao HOM05D000042 ORTHO05D000028 6.8e-06 55.1 216 31.5
TPR.G8340 Trifolium pratense HOM05D000042 ORTHO05D000028 6.8e-06 55.1 80 38.8
Gohir.A02G107301 Gossypium hirsutum HOM05D000042 ORTHO05D000028 8.9e-06 54.7 152 34.2


User provided reference genes

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